Experiment: ICP1_phage_235.3_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17140 and CSW01_17145 are separated by 115 nucleotides CSW01_17145 and CSW01_17150 are separated by 85 nucleotides CSW01_17150 and CSW01_17155 are separated by 11 nucleotides CSW01_17155 and CSW01_17160 are separated by 101 nucleotides
CSW01_17140: CSW01_17140 - urease, at 519,080 to 519,562
_17140
CSW01_17145: CSW01_17145 - ABC transporter substrate-binding protein, at 519,678 to 520,463
_17145
CSW01_17150: CSW01_17150 - thiol:disulfide oxidoreductase, at 520,549 to 521,217
_17150
CSW01_17155: CSW01_17155 - glutathione S-transferase, at 521,229 to 521,840
_17155
CSW01_17160: CSW01_17160 - TetR/AcrR family transcriptional regulator, at 521,942 to 522,538
_17160
Position (kb) 520
521
522 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 519.591 kb on + strand at 519.668 kb on - strand at 519.714 kb on + strand at 519.883 kb on - strand, within CSW01_17145 at 520.371 kb on - strand, within CSW01_17145 at 520.410 kb on - strand at 520.410 kb on - strand at 520.458 kb on + strand at 520.495 kb on + strand at 520.497 kb on + strand at 520.503 kb on - strand at 520.575 kb on + strand at 520.592 kb on + strand at 520.603 kb on + strand at 520.617 kb on + strand, within CSW01_17150 at 520.618 kb on + strand, within CSW01_17150 at 520.624 kb on + strand, within CSW01_17150 at 520.625 kb on - strand, within CSW01_17150 at 520.626 kb on - strand, within CSW01_17150 at 520.632 kb on - strand, within CSW01_17150 at 520.668 kb on + strand, within CSW01_17150 at 520.669 kb on - strand, within CSW01_17150 at 520.679 kb on - strand, within CSW01_17150 at 520.724 kb on + strand, within CSW01_17150 at 520.802 kb on + strand, within CSW01_17150 at 520.885 kb on + strand, within CSW01_17150 at 520.989 kb on + strand, within CSW01_17150 at 521.024 kb on - strand, within CSW01_17150 at 521.121 kb on + strand, within CSW01_17150 at 521.150 kb on - strand, within CSW01_17150 at 521.157 kb on + strand at 521.402 kb on + strand, within CSW01_17155 at 521.434 kb on + strand, within CSW01_17155 at 521.442 kb on + strand, within CSW01_17155 at 521.644 kb on + strand, within CSW01_17155 at 521.654 kb on + strand, within CSW01_17155 at 521.654 kb on + strand, within CSW01_17155 at 521.654 kb on + strand, within CSW01_17155 at 521.654 kb on + strand, within CSW01_17155 at 521.654 kb on + strand, within CSW01_17155 at 521.654 kb on + strand, within CSW01_17155 at 521.654 kb on + strand, within CSW01_17155 at 521.654 kb on + strand, within CSW01_17155 at 521.656 kb on + strand, within CSW01_17155 at 521.656 kb on + strand, within CSW01_17155 at 521.656 kb on + strand, within CSW01_17155 at 521.662 kb on - strand, within CSW01_17155 at 521.662 kb on - strand, within CSW01_17155 at 521.662 kb on - strand, within CSW01_17155 at 521.664 kb on - strand, within CSW01_17155 at 521.664 kb on - strand, within CSW01_17155 at 521.664 kb on - strand, within CSW01_17155 at 521.670 kb on - strand, within CSW01_17155 at 521.702 kb on - strand, within CSW01_17155 at 521.702 kb on - strand, within CSW01_17155 at 521.808 kb on + strand at 522.071 kb on - strand, within CSW01_17160
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep2 remove 519,591 + +1.0 519,668 - +0.4 519,714 + +1.7 519,883 - CSW01_17145 0.26 -1.6 520,371 - CSW01_17145 0.88 -1.0 520,410 - +0.6 520,410 - +1.4 520,458 + +0.2 520,495 + +0.7 520,497 + +0.2 520,503 - -2.1 520,575 + +2.6 520,592 + -0.4 520,603 + +0.2 520,617 + CSW01_17150 0.10 -1.3 520,618 + CSW01_17150 0.10 -0.4 520,624 + CSW01_17150 0.11 +1.2 520,625 - CSW01_17150 0.11 -0.3 520,626 - CSW01_17150 0.12 +0.1 520,632 - CSW01_17150 0.12 +1.0 520,668 + CSW01_17150 0.18 +1.2 520,669 - CSW01_17150 0.18 +1.6 520,679 - CSW01_17150 0.19 -1.7 520,724 + CSW01_17150 0.26 +0.4 520,802 + CSW01_17150 0.38 -0.1 520,885 + CSW01_17150 0.50 +0.3 520,989 + CSW01_17150 0.66 +0.4 521,024 - CSW01_17150 0.71 +0.5 521,121 + CSW01_17150 0.86 +0.1 521,150 - CSW01_17150 0.90 -0.0 521,157 + -1.0 521,402 + CSW01_17155 0.28 +0.7 521,434 + CSW01_17155 0.33 -0.7 521,442 + CSW01_17155 0.35 -1.7 521,644 + CSW01_17155 0.68 -0.1 521,654 + CSW01_17155 0.69 +0.9 521,654 + CSW01_17155 0.69 -0.5 521,654 + CSW01_17155 0.69 -1.6 521,654 + CSW01_17155 0.69 +0.7 521,654 + CSW01_17155 0.69 +1.3 521,654 + CSW01_17155 0.69 -1.9 521,654 + CSW01_17155 0.69 -1.6 521,654 + CSW01_17155 0.69 +0.7 521,656 + CSW01_17155 0.70 +1.8 521,656 + CSW01_17155 0.70 +0.4 521,656 + CSW01_17155 0.70 +0.8 521,662 - CSW01_17155 0.71 -0.8 521,662 - CSW01_17155 0.71 -1.6 521,662 - CSW01_17155 0.71 -2.1 521,664 - CSW01_17155 0.71 -0.8 521,664 - CSW01_17155 0.71 +1.7 521,664 - CSW01_17155 0.71 +0.2 521,670 - CSW01_17155 0.72 -3.1 521,702 - CSW01_17155 0.77 +1.5 521,702 - CSW01_17155 0.77 +0.3 521,808 + +1.0 522,071 - CSW01_17160 0.22 -1.7
Or see this region's nucleotide sequence