Experiment: ICP1_phage_235.3_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17040 and CSW01_17045 are separated by 11 nucleotides CSW01_17045 and CSW01_17050 are separated by 100 nucleotides
CSW01_17040: CSW01_17040 - NAD(P)(+) transhydrogenase (Re/Si-specific) subunit alpha, at 498,408 to 499,946
_17040
CSW01_17045: CSW01_17045 - NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta, at 499,958 to 501,334
_17045
CSW01_17050: CSW01_17050 - histidine kinase, at 501,435 to 502,934
_17050
Position (kb) 499
500
501
502 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 499.074 kb on + strand, within CSW01_17040 at 499.236 kb on - strand, within CSW01_17040 at 499.324 kb on + strand, within CSW01_17040 at 499.360 kb on - strand, within CSW01_17040 at 499.464 kb on + strand, within CSW01_17040 at 499.505 kb on + strand, within CSW01_17040 at 499.539 kb on - strand, within CSW01_17040 at 499.596 kb on - strand, within CSW01_17040 at 499.606 kb on - strand, within CSW01_17040 at 499.629 kb on + strand, within CSW01_17040 at 499.753 kb on - strand, within CSW01_17040 at 499.764 kb on + strand, within CSW01_17040 at 499.764 kb on + strand, within CSW01_17040 at 499.764 kb on + strand, within CSW01_17040 at 499.764 kb on + strand, within CSW01_17040 at 499.772 kb on - strand, within CSW01_17040 at 499.772 kb on - strand, within CSW01_17040 at 499.772 kb on - strand, within CSW01_17040 at 499.900 kb on + strand at 499.980 kb on - strand at 500.205 kb on + strand, within CSW01_17045 at 500.213 kb on - strand, within CSW01_17045 at 500.233 kb on - strand, within CSW01_17045 at 500.240 kb on - strand, within CSW01_17045 at 500.260 kb on - strand, within CSW01_17045 at 500.622 kb on - strand, within CSW01_17045 at 500.622 kb on - strand, within CSW01_17045 at 500.656 kb on + strand, within CSW01_17045 at 500.669 kb on - strand, within CSW01_17045 at 500.976 kb on - strand, within CSW01_17045 at 501.106 kb on - strand, within CSW01_17045 at 501.130 kb on - strand, within CSW01_17045 at 501.192 kb on - strand, within CSW01_17045 at 501.284 kb on - strand at 501.284 kb on - strand at 501.319 kb on + strand at 501.690 kb on - strand, within CSW01_17050 at 501.690 kb on - strand, within CSW01_17050 at 501.804 kb on + strand, within CSW01_17050 at 501.826 kb on + strand, within CSW01_17050 at 501.848 kb on - strand, within CSW01_17050 at 501.848 kb on - strand, within CSW01_17050 at 501.998 kb on + strand, within CSW01_17050 at 502.003 kb on + strand, within CSW01_17050 at 502.109 kb on + strand, within CSW01_17050 at 502.117 kb on - strand, within CSW01_17050 at 502.146 kb on + strand, within CSW01_17050 at 502.156 kb on + strand, within CSW01_17050 at 502.156 kb on + strand, within CSW01_17050 at 502.164 kb on - strand, within CSW01_17050
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep2 remove 499,074 + CSW01_17040 0.43 +0.1 499,236 - CSW01_17040 0.54 -0.2 499,324 + CSW01_17040 0.60 +1.8 499,360 - CSW01_17040 0.62 +1.2 499,464 + CSW01_17040 0.69 -2.2 499,505 + CSW01_17040 0.71 +0.4 499,539 - CSW01_17040 0.73 +1.1 499,596 - CSW01_17040 0.77 -0.4 499,606 - CSW01_17040 0.78 -2.5 499,629 + CSW01_17040 0.79 -2.2 499,753 - CSW01_17040 0.87 +0.9 499,764 + CSW01_17040 0.88 -0.8 499,764 + CSW01_17040 0.88 -0.8 499,764 + CSW01_17040 0.88 -0.7 499,764 + CSW01_17040 0.88 +2.7 499,772 - CSW01_17040 0.89 -1.9 499,772 - CSW01_17040 0.89 -1.9 499,772 - CSW01_17040 0.89 +0.5 499,900 + -2.8 499,980 - -0.5 500,205 + CSW01_17045 0.18 +0.9 500,213 - CSW01_17045 0.19 -1.1 500,233 - CSW01_17045 0.20 -0.5 500,240 - CSW01_17045 0.20 +0.8 500,260 - CSW01_17045 0.22 +0.5 500,622 - CSW01_17045 0.48 +1.7 500,622 - CSW01_17045 0.48 -1.2 500,656 + CSW01_17045 0.51 +0.5 500,669 - CSW01_17045 0.52 +0.8 500,976 - CSW01_17045 0.74 -1.7 501,106 - CSW01_17045 0.83 +0.5 501,130 - CSW01_17045 0.85 -0.3 501,192 - CSW01_17045 0.90 -0.8 501,284 - +1.7 501,284 - +0.9 501,319 + -0.2 501,690 - CSW01_17050 0.17 -0.8 501,690 - CSW01_17050 0.17 +1.3 501,804 + CSW01_17050 0.25 -1.5 501,826 + CSW01_17050 0.26 -0.6 501,848 - CSW01_17050 0.28 +1.6 501,848 - CSW01_17050 0.28 +0.1 501,998 + CSW01_17050 0.38 +0.7 502,003 + CSW01_17050 0.38 +0.5 502,109 + CSW01_17050 0.45 -1.4 502,117 - CSW01_17050 0.45 +1.1 502,146 + CSW01_17050 0.47 -0.2 502,156 + CSW01_17050 0.48 +1.3 502,156 + CSW01_17050 0.48 -1.4 502,164 - CSW01_17050 0.49 +0.2
Or see this region's nucleotide sequence