Experiment: ICP1_phage_235.3_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_16610 and CSW01_16615 overlap by 14 nucleotides CSW01_16615 and CSW01_16620 are separated by 127 nucleotides CSW01_16620 and CSW01_16625 are separated by 56 nucleotides CSW01_16625 and CSW01_16630 are separated by 114 nucleotides CSW01_16630 and CSW01_16635 are separated by 43 nucleotides CSW01_16635 and CSW01_16640 are separated by 62 nucleotides CSW01_16640 and CSW01_16645 overlap by 4 nucleotides
CSW01_16610: CSW01_16610 - prevent-host-death family protein, at 418,160 to 418,432
_16610
CSW01_16615: CSW01_16615 - type II toxin-antitoxin system RelE/ParE family toxin, at 418,419 to 418,709
_16615
CSW01_16620: CSW01_16620 - N-acetyltransferase, at 418,837 to 419,292
_16620
CSW01_16625: CSW01_16625 - acetyltransferase, at 419,349 to 419,471
_16625
CSW01_16630: CSW01_16630 - DUF645 domain-containing protein, at 419,586 to 419,766
_16630
CSW01_16635: CSW01_16635 - hypothetical protein, at 419,810 to 419,905
_16635
CSW01_16640: CSW01_16640 - N-acetyltransferase, at 419,968 to 420,465
_16640
CSW01_16645: CSW01_16645 - DUF1778 domain-containing protein, at 420,462 to 420,734
_16645
Position (kb) 419
420 Strain fitness (log2 ratio) -1
0
1
2 at 418.609 kb on - strand, within CSW01_16615 at 419.473 kb on - strand at 419.695 kb on - strand, within CSW01_16630 at 419.704 kb on - strand, within CSW01_16630 at 419.870 kb on + strand, within CSW01_16635
Per-strain Table
Or see this region's nucleotide sequence