Experiment: ICP1_phage_235.3_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_15945 and CSW01_15950 are separated by 47 nucleotides CSW01_15950 and CSW01_15955 are separated by 72 nucleotides CSW01_15955 and CSW01_15960 are separated by 252 nucleotides CSW01_15960 and CSW01_15965 are separated by 302 nucleotides CSW01_15965 and CSW01_15970 are separated by 176 nucleotides
CSW01_15945: CSW01_15945 - DUF1817 domain-containing protein, at 356,930 to 357,967
_15945
CSW01_15950: CSW01_15950 - hypothetical protein, at 358,015 to 358,074
_15950
CSW01_15955: CSW01_15955 - DUF3709 domain-containing protein, at 358,147 to 358,470
_15955
CSW01_15960: CSW01_15960 - hypothetical protein, at 358,723 to 359,118
_15960
CSW01_15965: CSW01_15965 - DUF645 domain-containing protein, at 359,421 to 359,602
_15965
CSW01_15970: CSW01_15970 - hypothetical protein, at 359,779 to 360,174
_15970
Position (kb) 358
359
360 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 357.730 kb on - strand, within CSW01_15945 at 357.734 kb on + strand, within CSW01_15945 at 357.827 kb on - strand, within CSW01_15945 at 357.858 kb on + strand, within CSW01_15945 at 357.956 kb on - strand at 357.972 kb on - strand at 357.974 kb on + strand at 357.982 kb on - strand at 357.982 kb on - strand at 357.982 kb on - strand at 357.982 kb on - strand at 357.983 kb on + strand at 358.075 kb on - strand at 358.100 kb on + strand at 358.184 kb on - strand, within CSW01_15955 at 358.184 kb on - strand, within CSW01_15955 at 358.274 kb on + strand, within CSW01_15955 at 358.274 kb on + strand, within CSW01_15955 at 358.496 kb on - strand at 359.502 kb on + strand, within CSW01_15965 at 359.502 kb on + strand, within CSW01_15965 at 359.502 kb on + strand, within CSW01_15965 at 359.510 kb on - strand, within CSW01_15965 at 359.578 kb on + strand, within CSW01_15965 at 359.667 kb on + strand at 359.712 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep2 remove 357,730 - CSW01_15945 0.77 +1.0 357,734 + CSW01_15945 0.77 -1.8 357,827 - CSW01_15945 0.86 -1.1 357,858 + CSW01_15945 0.89 +0.2 357,956 - +0.0 357,972 - +0.5 357,974 + -0.6 357,982 - -2.6 357,982 - +0.5 357,982 - +1.0 357,982 - -3.0 357,983 + -0.1 358,075 - -1.9 358,100 + -3.1 358,184 - CSW01_15955 0.11 -1.7 358,184 - CSW01_15955 0.11 +1.2 358,274 + CSW01_15955 0.39 +0.4 358,274 + CSW01_15955 0.39 +0.3 358,496 - -0.1 359,502 + CSW01_15965 0.45 -3.4 359,502 + CSW01_15965 0.45 -0.6 359,502 + CSW01_15965 0.45 +0.9 359,510 - CSW01_15965 0.49 -0.4 359,578 + CSW01_15965 0.86 +0.6 359,667 + +1.5 359,712 - +1.0
Or see this region's nucleotide sequence