Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15925

Experiment: ICP1_phage_235.3_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15915 and CSW01_15920 overlap by 35 nucleotidesCSW01_15920 and CSW01_15925 are separated by 111 nucleotidesCSW01_15925 and CSW01_15930 overlap by 68 nucleotidesCSW01_15930 and CSW01_15935 are separated by 60 nucleotides CSW01_15915: CSW01_15915 - restriction endonuclease, at 351,890 to 352,825 _15915 CSW01_15920: CSW01_15920 - DUF3265 domain-containing protein, at 352,791 to 352,931 _15920 CSW01_15925: CSW01_15925 - hypothetical protein, at 353,043 to 354,065 _15925 CSW01_15930: CSW01_15930 - hypothetical protein, at 353,998 to 354,612 _15930 CSW01_15935: CSW01_15935 - chemotaxis protein, at 354,673 to 355,368 _15935 Position (kb) 353 354 355Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 352.044 kb on - strand, within CSW01_15915at 352.050 kb on + strand, within CSW01_15915at 352.077 kb on + strand, within CSW01_15915at 352.077 kb on + strand, within CSW01_15915at 352.091 kb on - strand, within CSW01_15915at 352.177 kb on + strand, within CSW01_15915at 352.185 kb on - strand, within CSW01_15915at 352.308 kb on + strand, within CSW01_15915at 352.318 kb on + strand, within CSW01_15915at 352.321 kb on - strand, within CSW01_15915at 352.361 kb on - strand, within CSW01_15915at 352.487 kb on + strand, within CSW01_15915at 352.487 kb on + strand, within CSW01_15915at 352.496 kb on + strand, within CSW01_15915at 352.506 kb on - strand, within CSW01_15915at 352.589 kb on - strand, within CSW01_15915at 352.651 kb on + strand, within CSW01_15915at 352.664 kb on - strand, within CSW01_15915at 352.669 kb on - strand, within CSW01_15915at 352.669 kb on - strand, within CSW01_15915at 352.671 kb on + strand, within CSW01_15915at 352.679 kb on - strand, within CSW01_15915at 352.679 kb on - strand, within CSW01_15915at 352.764 kb on - strandat 352.764 kb on - strandat 352.778 kb on - strandat 352.778 kb on - strandat 352.832 kb on + strand, within CSW01_15920at 352.840 kb on - strand, within CSW01_15920at 352.890 kb on - strand, within CSW01_15920at 352.898 kb on - strand, within CSW01_15920at 352.904 kb on + strand, within CSW01_15920at 352.924 kb on + strandat 352.924 kb on + strandat 352.932 kb on - strandat 352.932 kb on - strandat 352.932 kb on - strandat 352.932 kb on - strandat 352.932 kb on - strandat 352.997 kb on - strandat 353.048 kb on + strandat 353.056 kb on - strandat 353.216 kb on + strand, within CSW01_15925at 353.234 kb on - strand, within CSW01_15925at 353.286 kb on - strand, within CSW01_15925at 353.287 kb on - strand, within CSW01_15925at 353.324 kb on + strand, within CSW01_15925at 353.342 kb on + strand, within CSW01_15925at 353.349 kb on + strand, within CSW01_15925at 353.375 kb on + strand, within CSW01_15925at 353.375 kb on + strand, within CSW01_15925at 353.375 kb on + strand, within CSW01_15925at 353.383 kb on - strand, within CSW01_15925at 353.385 kb on + strand, within CSW01_15925at 353.396 kb on + strand, within CSW01_15925at 353.440 kb on - strand, within CSW01_15925at 353.440 kb on - strand, within CSW01_15925at 353.510 kb on + strand, within CSW01_15925at 353.609 kb on + strand, within CSW01_15925at 353.727 kb on - strand, within CSW01_15925at 353.823 kb on + strand, within CSW01_15925at 353.831 kb on + strand, within CSW01_15925at 353.839 kb on - strand, within CSW01_15925at 353.846 kb on + strand, within CSW01_15925at 353.846 kb on + strand, within CSW01_15925at 353.846 kb on + strand, within CSW01_15925at 353.846 kb on + strand, within CSW01_15925at 353.846 kb on + strand, within CSW01_15925at 353.854 kb on - strand, within CSW01_15925at 353.854 kb on - strand, within CSW01_15925at 353.854 kb on - strand, within CSW01_15925at 353.894 kb on - strand, within CSW01_15925at 353.903 kb on + strand, within CSW01_15925at 353.917 kb on - strand, within CSW01_15925at 354.001 kb on + strandat 354.239 kb on - strand, within CSW01_15930at 354.306 kb on + strand, within CSW01_15930at 354.306 kb on + strand, within CSW01_15930at 354.307 kb on + strand, within CSW01_15930at 354.308 kb on + strand, within CSW01_15930at 354.308 kb on + strand, within CSW01_15930at 354.314 kb on - strand, within CSW01_15930at 354.314 kb on - strand, within CSW01_15930at 354.314 kb on - strand, within CSW01_15930at 354.314 kb on - strand, within CSW01_15930at 354.314 kb on - strand, within CSW01_15930at 354.314 kb on - strand, within CSW01_15930at 354.316 kb on - strand, within CSW01_15930at 354.328 kb on - strand, within CSW01_15930at 354.345 kb on + strand, within CSW01_15930at 354.368 kb on + strand, within CSW01_15930at 354.448 kb on - strand, within CSW01_15930at 354.448 kb on - strand, within CSW01_15930at 354.458 kb on - strand, within CSW01_15930at 354.533 kb on - strand, within CSW01_15930at 354.557 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep2
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352,044 - CSW01_15915 0.16 -0.4
352,050 + CSW01_15915 0.17 +0.6
352,077 + CSW01_15915 0.20 +0.9
352,077 + CSW01_15915 0.20 +1.4
352,091 - CSW01_15915 0.21 +0.4
352,177 + CSW01_15915 0.31 -2.8
352,185 - CSW01_15915 0.32 -0.0
352,308 + CSW01_15915 0.45 -0.7
352,318 + CSW01_15915 0.46 -0.4
352,321 - CSW01_15915 0.46 -0.0
352,361 - CSW01_15915 0.50 +0.6
352,487 + CSW01_15915 0.64 -2.2
352,487 + CSW01_15915 0.64 +0.8
352,496 + CSW01_15915 0.65 +0.6
352,506 - CSW01_15915 0.66 +0.8
352,589 - CSW01_15915 0.75 +0.4
352,651 + CSW01_15915 0.81 -0.2
352,664 - CSW01_15915 0.83 +1.1
352,669 - CSW01_15915 0.83 -1.1
352,669 - CSW01_15915 0.83 +1.0
352,671 + CSW01_15915 0.83 +0.6
352,679 - CSW01_15915 0.84 -1.3
352,679 - CSW01_15915 0.84 +0.6
352,764 - -0.3
352,764 - +1.4
352,778 - +1.0
352,778 - -0.8
352,832 + CSW01_15920 0.29 -1.0
352,840 - CSW01_15920 0.35 +1.1
352,890 - CSW01_15920 0.70 -0.0
352,898 - CSW01_15920 0.76 -1.0
352,904 + CSW01_15920 0.80 -0.0
352,924 + -1.0
352,924 + +1.1
352,932 - +0.7
352,932 - -0.8
352,932 - -0.7
352,932 - -2.1
352,932 - -1.3
352,997 - -0.1
353,048 + -2.0
353,056 - -0.3
353,216 + CSW01_15925 0.17 -0.7
353,234 - CSW01_15925 0.19 -2.8
353,286 - CSW01_15925 0.24 -1.4
353,287 - CSW01_15925 0.24 -0.1
353,324 + CSW01_15925 0.27 +0.1
353,342 + CSW01_15925 0.29 -0.6
353,349 + CSW01_15925 0.30 -1.9
353,375 + CSW01_15925 0.32 +1.6
353,375 + CSW01_15925 0.32 +0.4
353,375 + CSW01_15925 0.32 -1.1
353,383 - CSW01_15925 0.33 +0.0
353,385 + CSW01_15925 0.33 -0.4
353,396 + CSW01_15925 0.35 -0.7
353,440 - CSW01_15925 0.39 +1.1
353,440 - CSW01_15925 0.39 +0.7
353,510 + CSW01_15925 0.46 +0.0
353,609 + CSW01_15925 0.55 +0.3
353,727 - CSW01_15925 0.67 +0.3
353,823 + CSW01_15925 0.76 +1.2
353,831 + CSW01_15925 0.77 -0.1
353,839 - CSW01_15925 0.78 -1.0
353,846 + CSW01_15925 0.78 -0.5
353,846 + CSW01_15925 0.78 -1.2
353,846 + CSW01_15925 0.78 +0.5
353,846 + CSW01_15925 0.78 +1.2
353,846 + CSW01_15925 0.78 +0.5
353,854 - CSW01_15925 0.79 +0.1
353,854 - CSW01_15925 0.79 -0.1
353,854 - CSW01_15925 0.79 +0.7
353,894 - CSW01_15925 0.83 +0.7
353,903 + CSW01_15925 0.84 -1.0
353,917 - CSW01_15925 0.85 -0.1
354,001 + +1.0
354,239 - CSW01_15930 0.39 +0.5
354,306 + CSW01_15930 0.50 -1.4
354,306 + CSW01_15930 0.50 -2.6
354,307 + CSW01_15930 0.50 -1.3
354,308 + CSW01_15930 0.50 -0.6
354,308 + CSW01_15930 0.50 -0.7
354,314 - CSW01_15930 0.51 -1.5
354,314 - CSW01_15930 0.51 -1.2
354,314 - CSW01_15930 0.51 -1.6
354,314 - CSW01_15930 0.51 -2.7
354,314 - CSW01_15930 0.51 -0.3
354,314 - CSW01_15930 0.51 -3.2
354,316 - CSW01_15930 0.52 -0.3
354,328 - CSW01_15930 0.54 -0.0
354,345 + CSW01_15930 0.56 +0.7
354,368 + CSW01_15930 0.60 -4.0
354,448 - CSW01_15930 0.73 +0.1
354,448 - CSW01_15930 0.73 -0.2
354,458 - CSW01_15930 0.75 +0.2
354,533 - CSW01_15930 0.87 -1.7
354,557 + +0.3

Or see this region's nucleotide sequence