Experiment: ICP1_phage_235.3_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_15760 and CSW01_15765 overlap by 28 nucleotides CSW01_15765 and CSW01_15770 are separated by 146 nucleotides CSW01_15770 and CSW01_15775 are separated by 199 nucleotides CSW01_15775 and CSW01_15780 are separated by 212 nucleotides CSW01_15780 and CSW01_15785 overlap by 4 nucleotides CSW01_15785 and CSW01_15790 are separated by 74 nucleotides
CSW01_15760: CSW01_15760 - TIGR03643 family protein, at 338,205 to 338,456
_15760
CSW01_15765: CSW01_15765 - DUF3265 domain-containing protein, at 338,429 to 338,578
_15765
CSW01_15770: CSW01_15770 - hypothetical protein, at 338,725 to 339,150
_15770
CSW01_15775: CSW01_15775 - DUF1349 domain-containing protein, at 339,350 to 339,979
_15775
CSW01_15780: CSW01_15780 - hypothetical protein, at 340,192 to 340,671
_15780
CSW01_15785: CSW01_15785 - DUF3265 domain-containing protein, at 340,668 to 340,784
_15785
CSW01_15790: CSW01_15790 - VOC family protein, at 340,859 to 341,272
_15790
Position (kb) 339
340 Strain fitness (log2 ratio) -2
-1
0
1
2 at 338.566 kb on + strand at 338.566 kb on + strand at 338.571 kb on + strand at 338.571 kb on + strand at 338.571 kb on + strand at 338.571 kb on + strand at 339.313 kb on + strand at 339.549 kb on - strand, within CSW01_15775 at 339.655 kb on + strand, within CSW01_15775 at 339.699 kb on - strand, within CSW01_15775 at 339.804 kb on - strand, within CSW01_15775 at 339.844 kb on + strand, within CSW01_15775 at 339.885 kb on + strand, within CSW01_15775 at 339.885 kb on + strand, within CSW01_15775 at 339.893 kb on - strand, within CSW01_15775 at 339.893 kb on - strand, within CSW01_15775 at 339.901 kb on + strand, within CSW01_15775 at 340.010 kb on - strand at 340.183 kb on + strand at 340.185 kb on - strand at 340.351 kb on - strand, within CSW01_15780 at 340.390 kb on + strand, within CSW01_15780 at 340.463 kb on - strand, within CSW01_15780 at 340.532 kb on - strand, within CSW01_15780 at 340.624 kb on + strand at 340.774 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep2 remove 338,566 + +0.8 338,566 + +1.4 338,571 + +1.4 338,571 + -0.1 338,571 + +0.0 338,571 + -0.1 339,313 + -1.9 339,549 - CSW01_15775 0.32 -0.3 339,655 + CSW01_15775 0.48 -0.2 339,699 - CSW01_15775 0.55 +0.0 339,804 - CSW01_15775 0.72 -1.3 339,844 + CSW01_15775 0.78 +0.5 339,885 + CSW01_15775 0.85 -0.7 339,885 + CSW01_15775 0.85 -0.6 339,893 - CSW01_15775 0.86 -0.5 339,893 - CSW01_15775 0.86 +0.4 339,901 + CSW01_15775 0.87 +2.0 340,010 - -0.3 340,183 + -2.2 340,185 - -2.5 340,351 - CSW01_15780 0.33 +0.1 340,390 + CSW01_15780 0.41 +2.1 340,463 - CSW01_15780 0.56 -0.2 340,532 - CSW01_15780 0.71 -0.9 340,624 + -0.5 340,774 - +0.3
Or see this region's nucleotide sequence