Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15510

Experiment: ICP1_phage_235.3_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15505 and CSW01_15510 are separated by 161 nucleotidesCSW01_15510 and CSW01_15515 are separated by 161 nucleotidesCSW01_15515 and CSW01_15520 are separated by 130 nucleotides CSW01_15505: CSW01_15505 - HNH endonuclease, at 317,303 to 317,980 _15505 CSW01_15510: CSW01_15510 - deoxyguanosinetriphosphate triphosphohydrolase, at 318,142 to 319,350 _15510 CSW01_15515: CSW01_15515 - HNH endonuclease, at 319,512 to 320,216 _15515 CSW01_15520: CSW01_15520 - hypothetical protein, at 320,347 to 320,712 _15520 Position (kb) 318 319 320Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 317.526 kb on + strand, within CSW01_15505at 317.526 kb on + strand, within CSW01_15505at 317.534 kb on - strand, within CSW01_15505at 317.588 kb on - strand, within CSW01_15505at 317.588 kb on - strand, within CSW01_15505at 317.671 kb on - strand, within CSW01_15505at 317.690 kb on + strand, within CSW01_15505at 317.698 kb on - strand, within CSW01_15505at 317.698 kb on - strand, within CSW01_15505at 317.698 kb on - strand, within CSW01_15505at 317.777 kb on + strand, within CSW01_15505at 317.792 kb on + strand, within CSW01_15505at 317.792 kb on + strand, within CSW01_15505at 318.200 kb on - strandat 318.274 kb on + strand, within CSW01_15510at 318.274 kb on + strand, within CSW01_15510at 318.334 kb on - strand, within CSW01_15510at 318.335 kb on + strand, within CSW01_15510at 318.368 kb on + strand, within CSW01_15510at 318.369 kb on + strand, within CSW01_15510at 318.376 kb on - strand, within CSW01_15510at 318.407 kb on + strand, within CSW01_15510at 318.415 kb on - strand, within CSW01_15510at 318.427 kb on + strand, within CSW01_15510at 318.454 kb on - strand, within CSW01_15510at 318.462 kb on - strand, within CSW01_15510at 318.602 kb on + strand, within CSW01_15510at 318.639 kb on - strand, within CSW01_15510at 318.660 kb on - strand, within CSW01_15510at 318.685 kb on + strand, within CSW01_15510at 318.787 kb on + strand, within CSW01_15510at 318.812 kb on + strand, within CSW01_15510at 318.820 kb on - strand, within CSW01_15510at 318.867 kb on + strand, within CSW01_15510at 318.867 kb on + strand, within CSW01_15510at 318.867 kb on + strand, within CSW01_15510at 318.867 kb on + strand, within CSW01_15510at 318.867 kb on + strand, within CSW01_15510at 318.874 kb on + strand, within CSW01_15510at 318.875 kb on - strand, within CSW01_15510at 318.882 kb on - strand, within CSW01_15510at 318.955 kb on - strand, within CSW01_15510at 318.965 kb on - strand, within CSW01_15510at 319.094 kb on + strand, within CSW01_15510at 319.094 kb on + strand, within CSW01_15510at 319.102 kb on - strand, within CSW01_15510at 319.139 kb on - strand, within CSW01_15510at 319.195 kb on + strand, within CSW01_15510at 319.211 kb on + strand, within CSW01_15510at 319.211 kb on + strand, within CSW01_15510at 319.219 kb on - strand, within CSW01_15510at 319.258 kb on + strandat 319.266 kb on - strandat 319.289 kb on + strandat 319.315 kb on + strandat 319.315 kb on + strandat 319.315 kb on + strandat 319.323 kb on - strandat 319.323 kb on - strandat 319.325 kb on + strandat 319.328 kb on - strandat 319.333 kb on - strandat 319.333 kb on - strandat 319.358 kb on - strandat 319.358 kb on - strandat 319.412 kb on + strandat 319.414 kb on + strandat 319.503 kb on - strandat 319.670 kb on - strand, within CSW01_15515at 319.681 kb on + strand, within CSW01_15515at 319.936 kb on - strand, within CSW01_15515at 319.951 kb on - strand, within CSW01_15515at 319.987 kb on - strand, within CSW01_15515at 319.993 kb on - strand, within CSW01_15515at 319.998 kb on - strand, within CSW01_15515at 320.030 kb on - strand, within CSW01_15515at 320.037 kb on + strand, within CSW01_15515at 320.116 kb on + strand, within CSW01_15515at 320.242 kb on - strandat 320.271 kb on + strandat 320.306 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep2
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317,526 + CSW01_15505 0.33 +0.9
317,526 + CSW01_15505 0.33 +1.0
317,534 - CSW01_15505 0.34 +0.1
317,588 - CSW01_15505 0.42 -4.2
317,588 - CSW01_15505 0.42 -2.9
317,671 - CSW01_15505 0.54 -0.6
317,690 + CSW01_15505 0.57 -0.2
317,698 - CSW01_15505 0.58 +0.2
317,698 - CSW01_15505 0.58 -0.2
317,698 - CSW01_15505 0.58 -0.2
317,777 + CSW01_15505 0.70 +0.2
317,792 + CSW01_15505 0.72 -2.1
317,792 + CSW01_15505 0.72 +0.8
318,200 - +0.4
318,274 + CSW01_15510 0.11 -0.2
318,274 + CSW01_15510 0.11 +0.4
318,334 - CSW01_15510 0.16 -1.8
318,335 + CSW01_15510 0.16 -0.1
318,368 + CSW01_15510 0.19 +1.4
318,369 + CSW01_15510 0.19 +0.3
318,376 - CSW01_15510 0.19 +1.0
318,407 + CSW01_15510 0.22 -2.1
318,415 - CSW01_15510 0.23 -0.5
318,427 + CSW01_15510 0.24 +1.1
318,454 - CSW01_15510 0.26 +0.8
318,462 - CSW01_15510 0.26 -2.0
318,602 + CSW01_15510 0.38 -2.6
318,639 - CSW01_15510 0.41 +1.0
318,660 - CSW01_15510 0.43 +1.3
318,685 + CSW01_15510 0.45 +0.6
318,787 + CSW01_15510 0.53 -0.1
318,812 + CSW01_15510 0.55 -0.5
318,820 - CSW01_15510 0.56 -1.2
318,867 + CSW01_15510 0.60 +1.0
318,867 + CSW01_15510 0.60 -0.7
318,867 + CSW01_15510 0.60 +0.4
318,867 + CSW01_15510 0.60 +0.2
318,867 + CSW01_15510 0.60 -1.9
318,874 + CSW01_15510 0.61 +0.9
318,875 - CSW01_15510 0.61 +0.6
318,882 - CSW01_15510 0.61 -0.0
318,955 - CSW01_15510 0.67 +2.3
318,965 - CSW01_15510 0.68 +1.2
319,094 + CSW01_15510 0.79 -1.3
319,094 + CSW01_15510 0.79 -1.1
319,102 - CSW01_15510 0.79 +0.8
319,139 - CSW01_15510 0.82 +1.0
319,195 + CSW01_15510 0.87 -0.8
319,211 + CSW01_15510 0.88 -0.8
319,211 + CSW01_15510 0.88 +1.4
319,219 - CSW01_15510 0.89 -0.1
319,258 + -0.6
319,266 - -4.2
319,289 + -1.2
319,315 + +1.4
319,315 + +0.2
319,315 + -1.5
319,323 - +0.4
319,323 - -1.0
319,325 + +1.1
319,328 - -0.6
319,333 - +2.3
319,333 - +0.2
319,358 - +0.6
319,358 - -0.5
319,412 + +0.2
319,414 + +0.9
319,503 - -0.0
319,670 - CSW01_15515 0.22 +1.2
319,681 + CSW01_15515 0.24 +0.9
319,936 - CSW01_15515 0.60 -1.1
319,951 - CSW01_15515 0.62 -2.1
319,987 - CSW01_15515 0.67 +0.0
319,993 - CSW01_15515 0.68 -1.3
319,998 - CSW01_15515 0.69 +1.4
320,030 - CSW01_15515 0.73 -2.1
320,037 + CSW01_15515 0.74 +0.4
320,116 + CSW01_15515 0.86 -0.9
320,242 - +0.2
320,271 + -2.2
320,306 + +2.7

Or see this region's nucleotide sequence