Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15345

Experiment: ICP1_phage_235.3_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15340 and CSW01_15345 are separated by 387 nucleotidesCSW01_15345 and CSW01_15350 are separated by 243 nucleotides CSW01_15340: CSW01_15340 - serine hydroxymethyltransferase, at 295,864 to 297,171 _15340 CSW01_15345: CSW01_15345 - XRE family transcriptional regulator, at 297,559 to 298,182 _15345 CSW01_15350: CSW01_15350 - glycine cleavage system aminomethyltransferase T, at 298,426 to 299,556 _15350 Position (kb) 297 298 299Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 296.603 kb on - strand, within CSW01_15340at 296.703 kb on - strand, within CSW01_15340at 296.703 kb on - strand, within CSW01_15340at 296.822 kb on + strand, within CSW01_15340at 296.830 kb on - strand, within CSW01_15340at 296.846 kb on + strand, within CSW01_15340at 296.898 kb on - strand, within CSW01_15340at 296.912 kb on - strand, within CSW01_15340at 297.142 kb on + strandat 297.190 kb on - strandat 297.212 kb on - strandat 297.278 kb on + strandat 297.278 kb on + strandat 297.278 kb on + strandat 297.285 kb on - strandat 297.285 kb on - strandat 297.286 kb on - strandat 297.286 kb on - strandat 297.286 kb on - strandat 297.286 kb on - strandat 297.298 kb on + strandat 297.301 kb on - strandat 297.335 kb on - strandat 297.346 kb on + strandat 297.346 kb on + strandat 297.354 kb on - strandat 297.354 kb on - strandat 297.354 kb on - strandat 297.354 kb on - strandat 297.445 kb on - strandat 297.631 kb on - strand, within CSW01_15345at 297.683 kb on + strand, within CSW01_15345at 297.702 kb on + strand, within CSW01_15345at 297.709 kb on + strand, within CSW01_15345at 297.719 kb on + strand, within CSW01_15345at 297.719 kb on + strand, within CSW01_15345at 297.719 kb on + strand, within CSW01_15345at 297.719 kb on + strand, within CSW01_15345at 297.719 kb on + strand, within CSW01_15345at 297.722 kb on - strand, within CSW01_15345at 297.727 kb on - strand, within CSW01_15345at 297.727 kb on - strand, within CSW01_15345at 297.727 kb on - strand, within CSW01_15345at 297.727 kb on - strand, within CSW01_15345at 297.727 kb on - strand, within CSW01_15345at 297.762 kb on + strand, within CSW01_15345at 297.762 kb on + strand, within CSW01_15345at 297.770 kb on - strand, within CSW01_15345at 297.770 kb on - strand, within CSW01_15345at 297.900 kb on - strand, within CSW01_15345at 297.920 kb on + strand, within CSW01_15345at 297.928 kb on - strand, within CSW01_15345at 297.969 kb on + strand, within CSW01_15345at 297.969 kb on + strand, within CSW01_15345at 297.985 kb on + strand, within CSW01_15345at 297.985 kb on - strand, within CSW01_15345at 297.985 kb on - strand, within CSW01_15345at 298.020 kb on - strand, within CSW01_15345at 298.087 kb on + strand, within CSW01_15345at 298.124 kb on - strandat 298.160 kb on + strandat 298.168 kb on - strandat 298.172 kb on + strandat 298.180 kb on - strandat 298.222 kb on + strandat 298.401 kb on + strandat 298.409 kb on - strandat 298.409 kb on - strandat 298.518 kb on - strandat 298.535 kb on + strandat 298.565 kb on + strand, within CSW01_15350at 298.622 kb on + strand, within CSW01_15350at 298.744 kb on - strand, within CSW01_15350at 298.776 kb on + strand, within CSW01_15350at 298.788 kb on + strand, within CSW01_15350at 298.795 kb on + strand, within CSW01_15350at 298.795 kb on + strand, within CSW01_15350at 298.795 kb on + strand, within CSW01_15350at 298.803 kb on - strand, within CSW01_15350at 298.859 kb on + strand, within CSW01_15350at 298.867 kb on - strand, within CSW01_15350at 298.902 kb on - strand, within CSW01_15350at 298.910 kb on - strand, within CSW01_15350at 298.946 kb on + strand, within CSW01_15350at 298.946 kb on - strand, within CSW01_15350at 298.948 kb on + strand, within CSW01_15350at 298.996 kb on + strand, within CSW01_15350at 299.004 kb on - strand, within CSW01_15350at 299.004 kb on - strand, within CSW01_15350at 299.004 kb on - strand, within CSW01_15350at 299.005 kb on + strand, within CSW01_15350at 299.090 kb on + strand, within CSW01_15350at 299.096 kb on + strand, within CSW01_15350at 299.096 kb on + strand, within CSW01_15350at 299.096 kb on + strand, within CSW01_15350at 299.096 kb on + strand, within CSW01_15350at 299.096 kb on + strand, within CSW01_15350at 299.096 kb on + strand, within CSW01_15350at 299.104 kb on - strand, within CSW01_15350at 299.104 kb on - strand, within CSW01_15350

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep2
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296,603 - CSW01_15340 0.56 -0.8
296,703 - CSW01_15340 0.64 +0.9
296,703 - CSW01_15340 0.64 -0.4
296,822 + CSW01_15340 0.73 -0.3
296,830 - CSW01_15340 0.74 +0.1
296,846 + CSW01_15340 0.75 +1.8
296,898 - CSW01_15340 0.79 -1.3
296,912 - CSW01_15340 0.80 -1.3
297,142 + -1.0
297,190 - +1.5
297,212 - -0.3
297,278 + +0.9
297,278 + +0.2
297,278 + -1.0
297,285 - -0.6
297,285 - -0.7
297,286 - -0.2
297,286 - -2.4
297,286 - -1.3
297,286 - +1.3
297,298 + +1.1
297,301 - -1.0
297,335 - -3.1
297,346 + -2.1
297,346 + -3.3
297,354 - -0.2
297,354 - -1.3
297,354 - -1.8
297,354 - +1.5
297,445 - -0.3
297,631 - CSW01_15345 0.12 +0.6
297,683 + CSW01_15345 0.20 +2.6
297,702 + CSW01_15345 0.23 +0.2
297,709 + CSW01_15345 0.24 +1.2
297,719 + CSW01_15345 0.26 +0.7
297,719 + CSW01_15345 0.26 -1.2
297,719 + CSW01_15345 0.26 +0.1
297,719 + CSW01_15345 0.26 +0.6
297,719 + CSW01_15345 0.26 +0.4
297,722 - CSW01_15345 0.26 +0.3
297,727 - CSW01_15345 0.27 -1.2
297,727 - CSW01_15345 0.27 -1.5
297,727 - CSW01_15345 0.27 +0.7
297,727 - CSW01_15345 0.27 +0.9
297,727 - CSW01_15345 0.27 -1.7
297,762 + CSW01_15345 0.33 -2.4
297,762 + CSW01_15345 0.33 -2.2
297,770 - CSW01_15345 0.34 -2.5
297,770 - CSW01_15345 0.34 +1.4
297,900 - CSW01_15345 0.55 +1.4
297,920 + CSW01_15345 0.58 -0.3
297,928 - CSW01_15345 0.59 +0.3
297,969 + CSW01_15345 0.66 +0.7
297,969 + CSW01_15345 0.66 +2.0
297,985 + CSW01_15345 0.68 +1.3
297,985 - CSW01_15345 0.68 +1.1
297,985 - CSW01_15345 0.68 +0.5
298,020 - CSW01_15345 0.74 +0.1
298,087 + CSW01_15345 0.85 -0.2
298,124 - -1.9
298,160 + -0.3
298,168 - +0.6
298,172 + +1.3
298,180 - +0.4
298,222 + -0.2
298,401 + +0.4
298,409 - -0.4
298,409 - +1.6
298,518 - +0.8
298,535 + -0.8
298,565 + CSW01_15350 0.12 -3.5
298,622 + CSW01_15350 0.17 +0.0
298,744 - CSW01_15350 0.28 +1.1
298,776 + CSW01_15350 0.31 +1.3
298,788 + CSW01_15350 0.32 -0.6
298,795 + CSW01_15350 0.33 -0.8
298,795 + CSW01_15350 0.33 +0.1
298,795 + CSW01_15350 0.33 -2.7
298,803 - CSW01_15350 0.33 -0.3
298,859 + CSW01_15350 0.38 +0.2
298,867 - CSW01_15350 0.39 -0.6
298,902 - CSW01_15350 0.42 -0.6
298,910 - CSW01_15350 0.43 +0.3
298,946 + CSW01_15350 0.46 -2.9
298,946 - CSW01_15350 0.46 +0.1
298,948 + CSW01_15350 0.46 -1.3
298,996 + CSW01_15350 0.50 -0.6
299,004 - CSW01_15350 0.51 -2.3
299,004 - CSW01_15350 0.51 +2.0
299,004 - CSW01_15350 0.51 -1.0
299,005 + CSW01_15350 0.51 -1.6
299,090 + CSW01_15350 0.59 +1.1
299,096 + CSW01_15350 0.59 +0.9
299,096 + CSW01_15350 0.59 +1.1
299,096 + CSW01_15350 0.59 -1.0
299,096 + CSW01_15350 0.59 -0.8
299,096 + CSW01_15350 0.59 -0.3
299,096 + CSW01_15350 0.59 +0.5
299,104 - CSW01_15350 0.60 -2.8
299,104 - CSW01_15350 0.60 -2.4

Or see this region's nucleotide sequence