Experiment: ICP1_phage_235.3_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_14825 and CSW01_14830 are separated by 245 nucleotides CSW01_14830 and CSW01_14835 are separated by 289 nucleotides
CSW01_14825: CSW01_14825 - GGDEF domain-containing protein, at 181,876 to 184,008
_14825
CSW01_14830: CSW01_14830 - cold-shock protein CspA, at 184,254 to 184,466
_14830
CSW01_14835: CSW01_14835 - SIMPL domain-containing protein, at 184,756 to 185,472
_14835
Position (kb) 184
185 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 183.302 kb on + strand, within CSW01_14825 at 183.302 kb on + strand, within CSW01_14825 at 183.302 kb on + strand, within CSW01_14825 at 183.310 kb on - strand, within CSW01_14825 at 183.310 kb on - strand, within CSW01_14825 at 183.312 kb on + strand, within CSW01_14825 at 183.360 kb on - strand, within CSW01_14825 at 183.360 kb on - strand, within CSW01_14825 at 183.407 kb on + strand, within CSW01_14825 at 183.407 kb on + strand, within CSW01_14825 at 183.415 kb on - strand, within CSW01_14825 at 183.415 kb on - strand, within CSW01_14825 at 183.415 kb on - strand, within CSW01_14825 at 183.436 kb on - strand, within CSW01_14825 at 183.503 kb on + strand, within CSW01_14825 at 183.533 kb on + strand, within CSW01_14825 at 183.635 kb on + strand, within CSW01_14825 at 183.803 kb on + strand at 183.811 kb on - strand at 183.811 kb on - strand at 183.811 kb on - strand at 183.811 kb on - strand at 183.835 kb on + strand at 183.900 kb on + strand at 183.900 kb on + strand at 183.908 kb on - strand at 183.908 kb on - strand at 183.908 kb on - strand at 183.908 kb on - strand at 183.922 kb on + strand at 183.922 kb on + strand at 183.922 kb on + strand at 183.922 kb on + strand at 183.922 kb on + strand at 183.922 kb on + strand at 183.922 kb on + strand at 183.922 kb on + strand at 183.922 kb on + strand at 183.922 kb on + strand at 183.922 kb on + strand at 183.930 kb on - strand at 183.930 kb on - strand at 183.930 kb on - strand at 183.930 kb on - strand at 183.930 kb on - strand at 183.930 kb on - strand at 183.930 kb on - strand at 183.957 kb on + strand at 184.446 kb on + strand at 184.642 kb on + strand at 184.655 kb on - strand at 184.727 kb on + strand at 184.781 kb on - strand at 184.958 kb on + strand, within CSW01_14835 at 185.297 kb on + strand, within CSW01_14835 at 185.300 kb on - strand, within CSW01_14835 at 185.435 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep2 remove 183,302 + CSW01_14825 0.67 -0.1 183,302 + CSW01_14825 0.67 +1.3 183,302 + CSW01_14825 0.67 +1.2 183,310 - CSW01_14825 0.67 -0.7 183,310 - CSW01_14825 0.67 -2.2 183,312 + CSW01_14825 0.67 -0.7 183,360 - CSW01_14825 0.70 -1.1 183,360 - CSW01_14825 0.70 +1.5 183,407 + CSW01_14825 0.72 -0.1 183,407 + CSW01_14825 0.72 -3.6 183,415 - CSW01_14825 0.72 +0.7 183,415 - CSW01_14825 0.72 -1.4 183,415 - CSW01_14825 0.72 -0.5 183,436 - CSW01_14825 0.73 -0.3 183,503 + CSW01_14825 0.76 +1.6 183,533 + CSW01_14825 0.78 +1.0 183,635 + CSW01_14825 0.82 -1.4 183,803 + +1.5 183,811 - +1.2 183,811 - +0.3 183,811 - -1.2 183,811 - +1.5 183,835 + -2.9 183,900 + -1.9 183,900 + +0.6 183,908 - -0.0 183,908 - -0.7 183,908 - +0.6 183,908 - -1.1 183,922 + -0.8 183,922 + -0.3 183,922 + +0.9 183,922 + +0.6 183,922 + -0.1 183,922 + +0.8 183,922 + +0.3 183,922 + +1.1 183,922 + -2.1 183,922 + -1.9 183,922 + +0.5 183,930 - +0.7 183,930 - +0.7 183,930 - -3.6 183,930 - -3.1 183,930 - +0.0 183,930 - -0.5 183,930 - +0.6 183,957 + -2.7 184,446 + -1.8 184,642 + -0.6 184,655 - +0.3 184,727 + +0.9 184,781 - -0.3 184,958 + CSW01_14835 0.28 -0.1 185,297 + CSW01_14835 0.75 -0.0 185,300 - CSW01_14835 0.76 -0.7 185,435 - -0.6
Or see this region's nucleotide sequence