Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14480

Experiment: ICP1_phage_235.3_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14475 and CSW01_14480 are separated by 500 nucleotidesCSW01_14480 and CSW01_14485 are separated by 268 nucleotides CSW01_14475: CSW01_14475 - cobinamide adenolsyltransferase, at 100,664 to 101,293 _14475 CSW01_14480: CSW01_14480 - transcriptional regulator, at 101,794 to 102,150 _14480 CSW01_14485: CSW01_14485 - hypothetical protein, at 102,419 to 103,117 _14485 Position (kb) 101 102 103Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 100.942 kb on - strand, within CSW01_14475at 100.952 kb on + strand, within CSW01_14475at 100.993 kb on + strand, within CSW01_14475at 101.048 kb on + strand, within CSW01_14475at 101.052 kb on - strand, within CSW01_14475at 101.057 kb on - strand, within CSW01_14475at 101.092 kb on - strand, within CSW01_14475at 101.124 kb on - strand, within CSW01_14475at 101.263 kb on + strandat 101.286 kb on + strandat 101.286 kb on + strandat 101.286 kb on - strandat 101.315 kb on + strandat 101.315 kb on + strandat 101.358 kb on + strandat 101.396 kb on + strandat 101.417 kb on - strandat 101.417 kb on - strandat 101.422 kb on - strandat 101.445 kb on - strandat 101.469 kb on + strandat 101.469 kb on - strandat 101.472 kb on - strandat 101.478 kb on - strandat 101.491 kb on - strandat 101.491 kb on - strandat 101.492 kb on - strandat 101.498 kb on + strandat 101.498 kb on + strandat 101.504 kb on + strandat 101.504 kb on + strandat 101.505 kb on - strandat 101.506 kb on - strandat 101.506 kb on - strandat 101.528 kb on - strandat 101.549 kb on + strandat 101.593 kb on - strandat 101.842 kb on + strand, within CSW01_14480at 101.842 kb on + strand, within CSW01_14480at 101.843 kb on + strand, within CSW01_14480at 101.843 kb on + strand, within CSW01_14480at 101.851 kb on - strand, within CSW01_14480at 101.851 kb on - strand, within CSW01_14480at 101.851 kb on - strand, within CSW01_14480at 101.882 kb on + strand, within CSW01_14480at 101.882 kb on + strand, within CSW01_14480at 101.882 kb on + strand, within CSW01_14480at 101.882 kb on + strand, within CSW01_14480at 101.882 kb on + strand, within CSW01_14480at 101.882 kb on + strand, within CSW01_14480at 101.890 kb on - strand, within CSW01_14480at 101.890 kb on - strand, within CSW01_14480at 101.890 kb on - strand, within CSW01_14480at 101.890 kb on - strand, within CSW01_14480at 101.890 kb on - strand, within CSW01_14480at 101.890 kb on - strand, within CSW01_14480at 101.890 kb on - strand, within CSW01_14480at 101.890 kb on - strand, within CSW01_14480at 101.890 kb on - strand, within CSW01_14480at 101.896 kb on + strand, within CSW01_14480at 101.896 kb on + strand, within CSW01_14480at 101.906 kb on + strand, within CSW01_14480at 101.914 kb on - strand, within CSW01_14480at 101.920 kb on + strand, within CSW01_14480at 101.931 kb on + strand, within CSW01_14480at 101.940 kb on - strand, within CSW01_14480at 101.940 kb on - strand, within CSW01_14480at 101.978 kb on + strand, within CSW01_14480at 101.978 kb on + strand, within CSW01_14480at 101.978 kb on + strand, within CSW01_14480at 101.978 kb on + strand, within CSW01_14480at 101.978 kb on + strand, within CSW01_14480at 101.978 kb on + strand, within CSW01_14480at 101.986 kb on - strand, within CSW01_14480at 101.986 kb on - strand, within CSW01_14480at 101.986 kb on - strand, within CSW01_14480at 101.986 kb on - strand, within CSW01_14480at 101.991 kb on + strand, within CSW01_14480at 101.995 kb on - strand, within CSW01_14480at 101.995 kb on - strand, within CSW01_14480at 101.995 kb on - strand, within CSW01_14480at 102.006 kb on + strand, within CSW01_14480at 102.011 kb on + strand, within CSW01_14480at 102.014 kb on - strand, within CSW01_14480at 102.024 kb on + strand, within CSW01_14480at 102.028 kb on + strand, within CSW01_14480at 102.032 kb on - strand, within CSW01_14480at 102.036 kb on + strand, within CSW01_14480at 102.057 kb on + strand, within CSW01_14480at 102.062 kb on + strand, within CSW01_14480at 102.067 kb on + strand, within CSW01_14480at 102.086 kb on + strand, within CSW01_14480at 102.086 kb on + strand, within CSW01_14480at 102.086 kb on + strand, within CSW01_14480at 102.094 kb on - strand, within CSW01_14480at 102.175 kb on - strandat 102.207 kb on + strandat 102.215 kb on - strandat 102.225 kb on - strandat 102.352 kb on - strandat 102.395 kb on + strandat 102.485 kb on + strandat 102.493 kb on + strand, within CSW01_14485at 102.495 kb on + strand, within CSW01_14485at 102.495 kb on + strand, within CSW01_14485at 102.503 kb on - strand, within CSW01_14485at 102.519 kb on + strand, within CSW01_14485at 102.555 kb on - strand, within CSW01_14485at 102.558 kb on - strand, within CSW01_14485at 102.601 kb on - strand, within CSW01_14485at 102.614 kb on - strand, within CSW01_14485at 102.614 kb on - strand, within CSW01_14485at 102.649 kb on + strand, within CSW01_14485at 102.662 kb on + strand, within CSW01_14485at 102.677 kb on - strand, within CSW01_14485at 102.729 kb on - strand, within CSW01_14485at 102.819 kb on + strand, within CSW01_14485at 102.853 kb on + strand, within CSW01_14485at 102.902 kb on + strand, within CSW01_14485at 102.905 kb on - strand, within CSW01_14485at 103.052 kb on - strandat 103.062 kb on - strandat 103.110 kb on + strandat 103.110 kb on - strandat 103.112 kb on + strandat 103.120 kb on - strandat 103.120 kb on - strandat 103.125 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep2
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100,942 - CSW01_14475 0.44 +0.5
100,952 + CSW01_14475 0.46 +0.4
100,993 + CSW01_14475 0.52 +3.1
101,048 + CSW01_14475 0.61 +1.7
101,052 - CSW01_14475 0.62 +1.4
101,057 - CSW01_14475 0.62 +0.0
101,092 - CSW01_14475 0.68 +0.8
101,124 - CSW01_14475 0.73 +0.8
101,263 + +0.3
101,286 + +0.7
101,286 + -1.4
101,286 - -0.0
101,315 + -3.4
101,315 + +0.7
101,358 + +0.5
101,396 + +1.2
101,417 - +1.2
101,417 - +0.7
101,422 - -0.1
101,445 - -0.5
101,469 + +0.5
101,469 - -0.6
101,472 - +0.2
101,478 - -2.6
101,491 - +0.9
101,491 - -2.0
101,492 - +0.6
101,498 + -0.1
101,498 + -0.7
101,504 + +0.6
101,504 + +0.4
101,505 - +1.2
101,506 - +1.5
101,506 - +0.6
101,528 - +0.1
101,549 + +0.4
101,593 - +1.6
101,842 + CSW01_14480 0.13 -0.3
101,842 + CSW01_14480 0.13 -1.3
101,843 + CSW01_14480 0.14 -3.1
101,843 + CSW01_14480 0.14 -1.9
101,851 - CSW01_14480 0.16 -1.3
101,851 - CSW01_14480 0.16 +0.6
101,851 - CSW01_14480 0.16 -3.0
101,882 + CSW01_14480 0.25 -1.6
101,882 + CSW01_14480 0.25 -2.3
101,882 + CSW01_14480 0.25 -2.0
101,882 + CSW01_14480 0.25 -0.2
101,882 + CSW01_14480 0.25 +0.7
101,882 + CSW01_14480 0.25 -2.7
101,890 - CSW01_14480 0.27 -1.1
101,890 - CSW01_14480 0.27 -0.6
101,890 - CSW01_14480 0.27 -4.3
101,890 - CSW01_14480 0.27 +0.1
101,890 - CSW01_14480 0.27 +1.7
101,890 - CSW01_14480 0.27 +1.3
101,890 - CSW01_14480 0.27 -1.6
101,890 - CSW01_14480 0.27 +0.6
101,890 - CSW01_14480 0.27 -1.3
101,896 + CSW01_14480 0.29 +0.9
101,896 + CSW01_14480 0.29 -0.8
101,906 + CSW01_14480 0.31 +0.9
101,914 - CSW01_14480 0.34 -0.9
101,920 + CSW01_14480 0.35 -0.3
101,931 + CSW01_14480 0.38 -1.8
101,940 - CSW01_14480 0.41 -0.1
101,940 - CSW01_14480 0.41 -1.1
101,978 + CSW01_14480 0.52 -0.1
101,978 + CSW01_14480 0.52 +0.7
101,978 + CSW01_14480 0.52 +0.3
101,978 + CSW01_14480 0.52 -1.6
101,978 + CSW01_14480 0.52 +1.0
101,978 + CSW01_14480 0.52 +0.3
101,986 - CSW01_14480 0.54 +0.6
101,986 - CSW01_14480 0.54 -1.5
101,986 - CSW01_14480 0.54 -0.5
101,986 - CSW01_14480 0.54 +0.9
101,991 + CSW01_14480 0.55 +0.2
101,995 - CSW01_14480 0.56 -3.3
101,995 - CSW01_14480 0.56 -1.6
101,995 - CSW01_14480 0.56 +0.7
102,006 + CSW01_14480 0.59 +0.2
102,011 + CSW01_14480 0.61 -0.1
102,014 - CSW01_14480 0.62 +0.1
102,024 + CSW01_14480 0.64 +2.1
102,028 + CSW01_14480 0.66 +0.7
102,032 - CSW01_14480 0.67 -2.5
102,036 + CSW01_14480 0.68 -0.3
102,057 + CSW01_14480 0.74 +0.9
102,062 + CSW01_14480 0.75 +0.3
102,067 + CSW01_14480 0.76 -0.0
102,086 + CSW01_14480 0.82 -0.0
102,086 + CSW01_14480 0.82 -0.8
102,086 + CSW01_14480 0.82 -2.5
102,094 - CSW01_14480 0.84 +0.9
102,175 - +0.6
102,207 + -2.6
102,215 - -0.3
102,225 - +0.2
102,352 - -0.2
102,395 + +0.2
102,485 + +2.1
102,493 + CSW01_14485 0.11 +0.2
102,495 + CSW01_14485 0.11 -2.3
102,495 + CSW01_14485 0.11 -0.6
102,503 - CSW01_14485 0.12 +0.9
102,519 + CSW01_14485 0.14 -0.5
102,555 - CSW01_14485 0.19 +1.1
102,558 - CSW01_14485 0.20 -0.8
102,601 - CSW01_14485 0.26 +2.7
102,614 - CSW01_14485 0.28 -2.9
102,614 - CSW01_14485 0.28 -1.3
102,649 + CSW01_14485 0.33 -1.6
102,662 + CSW01_14485 0.35 -1.4
102,677 - CSW01_14485 0.37 +0.3
102,729 - CSW01_14485 0.44 -1.8
102,819 + CSW01_14485 0.57 -0.1
102,853 + CSW01_14485 0.62 +0.4
102,902 + CSW01_14485 0.69 -1.6
102,905 - CSW01_14485 0.70 -0.3
103,052 - -1.7
103,062 - +0.6
103,110 + +1.2
103,110 - +0.9
103,112 + -3.1
103,120 - -2.0
103,120 - +0.6
103,125 - -1.9

Or see this region's nucleotide sequence