Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14385

Experiment: ICP1_phage_235.3_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14375 and CSW01_14380 are separated by 5 nucleotidesCSW01_14380 and CSW01_14385 are separated by 4 nucleotidesCSW01_14385 and CSW01_14390 are separated by 46 nucleotides CSW01_14375: CSW01_14375 - phosphate ABC transporter permease subunit PstC, at 80,371 to 81,291 _14375 CSW01_14380: CSW01_14380 - phosphate ABC transporter, permease protein PstA, at 81,297 to 82,160 _14380 CSW01_14385: CSW01_14385 - phosphate ABC transporter ATP-binding protein, at 82,165 to 82,944 _14385 CSW01_14390: CSW01_14390 - GGDEF domain-containing protein, at 82,991 to 84,091 _14390 Position (kb) 82 83Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 81.182 kb on - strand, within CSW01_14375at 81.205 kb on + strandat 81.218 kb on + strandat 81.218 kb on + strandat 81.411 kb on + strand, within CSW01_14380at 81.623 kb on + strand, within CSW01_14380at 81.631 kb on - strand, within CSW01_14380at 81.631 kb on - strand, within CSW01_14380at 81.649 kb on - strand, within CSW01_14380at 81.759 kb on + strand, within CSW01_14380at 81.803 kb on + strand, within CSW01_14380at 81.874 kb on + strand, within CSW01_14380at 81.882 kb on - strand, within CSW01_14380at 81.882 kb on - strand, within CSW01_14380at 81.991 kb on + strand, within CSW01_14380at 82.001 kb on + strand, within CSW01_14380at 82.003 kb on + strand, within CSW01_14380at 82.009 kb on - strand, within CSW01_14380at 82.038 kb on - strand, within CSW01_14380at 82.038 kb on - strand, within CSW01_14380at 82.091 kb on - strandat 82.124 kb on + strandat 82.227 kb on + strandat 82.227 kb on + strandat 82.235 kb on - strandat 82.287 kb on - strand, within CSW01_14385at 82.291 kb on + strand, within CSW01_14385at 82.299 kb on - strand, within CSW01_14385at 82.312 kb on - strand, within CSW01_14385at 82.359 kb on + strand, within CSW01_14385at 82.359 kb on + strand, within CSW01_14385at 82.359 kb on + strand, within CSW01_14385at 82.389 kb on + strand, within CSW01_14385at 82.416 kb on - strand, within CSW01_14385at 82.435 kb on - strand, within CSW01_14385at 82.570 kb on + strand, within CSW01_14385at 82.572 kb on + strand, within CSW01_14385at 82.577 kb on + strand, within CSW01_14385at 82.577 kb on + strand, within CSW01_14385at 82.577 kb on + strand, within CSW01_14385at 82.577 kb on + strand, within CSW01_14385at 82.580 kb on - strand, within CSW01_14385at 82.582 kb on + strand, within CSW01_14385at 82.668 kb on + strand, within CSW01_14385at 82.742 kb on + strand, within CSW01_14385at 82.781 kb on - strand, within CSW01_14385at 82.781 kb on - strand, within CSW01_14385at 82.781 kb on - strand, within CSW01_14385at 82.799 kb on + strand, within CSW01_14385at 82.856 kb on + strand, within CSW01_14385at 82.914 kb on - strandat 82.965 kb on + strandat 82.989 kb on - strandat 83.083 kb on + strandat 83.083 kb on + strandat 83.088 kb on + strandat 83.088 kb on + strandat 83.091 kb on - strandat 83.183 kb on + strand, within CSW01_14390at 83.205 kb on - strand, within CSW01_14390at 83.207 kb on + strand, within CSW01_14390at 83.207 kb on + strand, within CSW01_14390at 83.215 kb on - strand, within CSW01_14390at 83.215 kb on - strand, within CSW01_14390at 83.294 kb on - strand, within CSW01_14390at 83.422 kb on - strand, within CSW01_14390at 83.442 kb on + strand, within CSW01_14390at 83.457 kb on - strand, within CSW01_14390at 83.459 kb on + strand, within CSW01_14390at 83.459 kb on + strand, within CSW01_14390at 83.459 kb on + strand, within CSW01_14390at 83.459 kb on + strand, within CSW01_14390at 83.466 kb on + strand, within CSW01_14390at 83.467 kb on - strand, within CSW01_14390at 83.467 kb on - strand, within CSW01_14390at 83.467 kb on - strand, within CSW01_14390at 83.474 kb on + strand, within CSW01_14390at 83.502 kb on - strand, within CSW01_14390at 83.509 kb on + strand, within CSW01_14390at 83.509 kb on + strand, within CSW01_14390at 83.517 kb on - strand, within CSW01_14390at 83.662 kb on + strand, within CSW01_14390at 83.790 kb on + strand, within CSW01_14390at 83.827 kb on + strand, within CSW01_14390at 83.875 kb on + strand, within CSW01_14390at 83.875 kb on + strand, within CSW01_14390at 83.883 kb on - strand, within CSW01_14390at 83.917 kb on + strand, within CSW01_14390

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep2
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81,182 - CSW01_14375 0.88 +0.4
81,205 + -0.7
81,218 + -0.5
81,218 + +0.7
81,411 + CSW01_14380 0.13 +0.6
81,623 + CSW01_14380 0.38 +0.3
81,631 - CSW01_14380 0.39 +0.4
81,631 - CSW01_14380 0.39 -0.6
81,649 - CSW01_14380 0.41 -2.1
81,759 + CSW01_14380 0.53 +1.9
81,803 + CSW01_14380 0.59 +0.6
81,874 + CSW01_14380 0.67 +1.9
81,882 - CSW01_14380 0.68 -0.8
81,882 - CSW01_14380 0.68 +1.5
81,991 + CSW01_14380 0.80 -0.2
82,001 + CSW01_14380 0.81 +0.8
82,003 + CSW01_14380 0.82 -2.2
82,009 - CSW01_14380 0.82 -1.1
82,038 - CSW01_14380 0.86 +0.8
82,038 - CSW01_14380 0.86 -0.7
82,091 - -0.7
82,124 + -0.0
82,227 + -2.9
82,227 + -0.6
82,235 - +1.6
82,287 - CSW01_14385 0.16 -3.2
82,291 + CSW01_14385 0.16 -3.8
82,299 - CSW01_14385 0.17 +0.2
82,312 - CSW01_14385 0.19 +0.2
82,359 + CSW01_14385 0.25 +1.2
82,359 + CSW01_14385 0.25 +0.6
82,359 + CSW01_14385 0.25 -0.3
82,389 + CSW01_14385 0.29 -3.1
82,416 - CSW01_14385 0.32 -0.7
82,435 - CSW01_14385 0.35 -2.5
82,570 + CSW01_14385 0.52 +0.0
82,572 + CSW01_14385 0.52 -0.1
82,577 + CSW01_14385 0.53 +1.6
82,577 + CSW01_14385 0.53 -3.2
82,577 + CSW01_14385 0.53 +1.2
82,577 + CSW01_14385 0.53 +0.7
82,580 - CSW01_14385 0.53 -2.2
82,582 + CSW01_14385 0.53 +0.9
82,668 + CSW01_14385 0.64 -0.2
82,742 + CSW01_14385 0.74 -2.1
82,781 - CSW01_14385 0.79 -1.4
82,781 - CSW01_14385 0.79 +1.7
82,781 - CSW01_14385 0.79 -2.3
82,799 + CSW01_14385 0.81 +0.7
82,856 + CSW01_14385 0.89 +0.6
82,914 - +0.6
82,965 + +0.1
82,989 - +1.2
83,083 + +1.2
83,083 + -0.7
83,088 + +2.4
83,088 + -0.9
83,091 - +0.7
83,183 + CSW01_14390 0.17 -0.5
83,205 - CSW01_14390 0.19 +0.3
83,207 + CSW01_14390 0.20 +0.8
83,207 + CSW01_14390 0.20 +0.8
83,215 - CSW01_14390 0.20 +0.2
83,215 - CSW01_14390 0.20 -0.2
83,294 - CSW01_14390 0.28 +1.1
83,422 - CSW01_14390 0.39 -2.3
83,442 + CSW01_14390 0.41 -1.0
83,457 - CSW01_14390 0.42 +0.8
83,459 + CSW01_14390 0.43 -2.9
83,459 + CSW01_14390 0.43 +0.6
83,459 + CSW01_14390 0.43 +1.9
83,459 + CSW01_14390 0.43 +0.0
83,466 + CSW01_14390 0.43 +1.5
83,467 - CSW01_14390 0.43 -0.2
83,467 - CSW01_14390 0.43 -0.3
83,467 - CSW01_14390 0.43 +0.0
83,474 + CSW01_14390 0.44 +1.3
83,502 - CSW01_14390 0.46 -0.8
83,509 + CSW01_14390 0.47 -3.1
83,509 + CSW01_14390 0.47 -2.7
83,517 - CSW01_14390 0.48 +1.3
83,662 + CSW01_14390 0.61 -0.3
83,790 + CSW01_14390 0.73 +0.2
83,827 + CSW01_14390 0.76 -1.4
83,875 + CSW01_14390 0.80 +1.3
83,875 + CSW01_14390 0.80 -1.1
83,883 - CSW01_14390 0.81 +0.1
83,917 + CSW01_14390 0.84 +0.8

Or see this region's nucleotide sequence