Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_13970

Experiment: ICP1_phage_235.3_MOI_rep2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	ICP1_phage_235.3_MOI_rep2
2,972,773	+				+2.4
2,972,773	+				-3.6
2,972,781	-				+0.7
2,972,781	-				+2.1
2,972,826	+				+1.5
2,972,890	+				-2.9
2,972,893	-				+2.1
2,972,898	-				+0.6
2,972,907	-				-3.1
2,972,913	+				+0.1
2,972,913	+				+0.1
2,972,915	+				+1.8
2,972,921	-				+2.5
2,972,921	-				+0.2
2,972,921	-				+1.0
2,972,921	-				+0.5
2,972,921	-				-3.4
2,972,923	-				-3.6
2,972,923	-				-0.2
2,972,926	-				+0.3
2,972,994	+		CSW01_13965	0.15	+0.0
2,973,009	+		CSW01_13965	0.17	-0.2
2,973,104	-		CSW01_13965	0.32	-0.1
2,973,104	-		CSW01_13965	0.32	+0.4
2,973,104	-		CSW01_13965	0.32	-3.2
2,973,110	+		CSW01_13965	0.33	+0.8
2,973,118	-		CSW01_13965	0.34	-0.0
2,973,146	-		CSW01_13965	0.39	+0.1
2,973,150	+		CSW01_13965	0.39	-0.2
2,973,207	-		CSW01_13965	0.48	-3.1
2,973,262	+		CSW01_13965	0.57	-2.3
2,973,262	+		CSW01_13965	0.57	-1.6
2,973,262	+		CSW01_13965	0.57	+1.6
2,973,262	+		CSW01_13965	0.57	-2.2
2,973,270	-		CSW01_13965	0.58	+0.5
2,973,295	+		CSW01_13965	0.62	+2.4
2,973,303	-		CSW01_13965	0.64	-0.3
2,973,303	-		CSW01_13965	0.64	-1.2
2,973,303	-		CSW01_13965	0.64	-0.9
2,973,303	-		CSW01_13965	0.64	-3.3
2,973,318	+		CSW01_13965	0.66	+1.3
2,973,372	+		CSW01_13965	0.74	-0.7
2,973,372	+		CSW01_13965	0.74	-0.2
2,973,393	+		CSW01_13965	0.78	+0.2
2,973,398	+		CSW01_13965	0.79	+0.7
2,973,398	+		CSW01_13965	0.79	+1.4
2,973,398	+		CSW01_13965	0.79	-0.0
2,973,398	+		CSW01_13965	0.79	+0.3
2,973,406	-		CSW01_13965	0.80	+0.1
2,973,406	-		CSW01_13965	0.80	-0.8
2,973,406	-		CSW01_13965	0.80	+0.2
2,973,406	-		CSW01_13965	0.80	+1.6
2,973,434	+		CSW01_13965	0.84	-0.3
2,973,434	+		CSW01_13965	0.84	+0.9
2,973,437	-		CSW01_13965	0.85	+0.4
2,973,437	-		CSW01_13965	0.85	-3.0
2,973,442	-		CSW01_13965	0.85	+1.0
2,973,497	-				-0.4
2,973,513	-				-0.9
2,973,535	+				+0.3
2,973,563	+				+0.6
2,973,563	+				+1.0
2,973,563	+				+1.9
2,973,563	+				+0.3
2,973,563	+				+1.6
2,973,563	+				+2.9
2,973,563	+				+1.0
2,973,571	-				+0.0
2,973,571	-				-4.3
2,973,571	-				+0.7
2,973,571	-				+2.1
2,973,587	-				-0.7
2,973,587	-				-1.2
2,973,587	-				-0.3
2,973,704	+				+0.8
2,973,720	+				+2.7
2,973,720	+				+0.2
2,973,742	-				+0.8
2,973,755	+				+0.4
2,973,756	+				+1.9
2,973,764	-				-2.6
2,973,764	-				-0.1
2,973,764	-				-3.1
2,973,769	+				-0.4
2,973,769	+				+0.4
2,973,803	+				-2.9
2,973,837	+				-3.2
2,973,837	+				+1.0
2,973,845	-				-0.8
2,973,847	+				-3.2
2,973,855	-				+0.2
2,973,873	+				-0.1
2,973,875	-				+2.3
2,973,885	+				-0.2
2,973,906	+				-2.7
2,973,911	+				-3.1
2,973,919	-				+1.6
2,973,919	-				-1.7
2,973,951	-				+1.2
2,974,001	+		CSW01_13970	0.12	-2.2
2,974,058	-		CSW01_13970	0.14	+1.5
2,974,065	-		CSW01_13970	0.15	+1.7
2,974,075	+		CSW01_13970	0.15	+0.6
2,974,075	+		CSW01_13970	0.15	-4.3
2,974,083	-		CSW01_13970	0.16	+1.5
2,974,083	-		CSW01_13970	0.16	+0.8
2,974,083	-		CSW01_13970	0.16	+1.2
2,974,144	+		CSW01_13970	0.18	-0.6
2,974,152	-		CSW01_13970	0.19	-3.9
2,974,152	-		CSW01_13970	0.19	-1.4
2,974,159	+		CSW01_13970	0.19	-3.2
2,974,172	-		CSW01_13970	0.20	-0.4
2,974,191	-		CSW01_13970	0.21	-1.3
2,974,202	+		CSW01_13970	0.21	+0.5
2,974,209	+		CSW01_13970	0.21	-0.1
2,974,217	-		CSW01_13970	0.22	-3.5
2,974,250	+		CSW01_13970	0.23	-1.7
2,974,258	-		CSW01_13970	0.24	-0.8
2,974,322	+		CSW01_13970	0.27	-3.1
2,974,399	+		CSW01_13970	0.30	+1.3
2,974,407	-		CSW01_13970	0.31	+1.0
2,974,407	-		CSW01_13970	0.31	-2.2
2,974,438	+		CSW01_13970	0.32	+0.5
2,974,438	+		CSW01_13970	0.32	-4.2
2,974,462	-		CSW01_13970	0.33	+0.7
2,974,476	+		CSW01_13970	0.34	-0.9
2,974,484	-		CSW01_13970	0.34	+0.1
2,974,486	+		CSW01_13970	0.34	-3.6
2,974,486	+		CSW01_13970	0.34	-0.7
2,974,489	-		CSW01_13970	0.34	-2.7
2,974,489	-		CSW01_13970	0.34	+0.6
2,974,494	-		CSW01_13970	0.35	+0.5
2,974,494	-		CSW01_13970	0.35	+2.2
2,974,501	+		CSW01_13970	0.35	+1.1
2,974,506	+		CSW01_13970	0.35	+0.6
2,974,514	-		CSW01_13970	0.35	+0.1
2,974,514	-		CSW01_13970	0.35	-0.0
2,974,543	+		CSW01_13970	0.37	+0.8
2,974,546	-		CSW01_13970	0.37	+0.6
2,974,637	+		CSW01_13970	0.41	-1.9
2,974,637	+		CSW01_13970	0.41	-0.8
2,974,644	+		CSW01_13970	0.41	-3.4
2,974,710	+		CSW01_13970	0.44	+1.7
2,974,743	+		CSW01_13970	0.46	+1.3
2,974,743	+		CSW01_13970	0.46	+2.0
2,974,766	+		CSW01_13970	0.47	+0.7
2,974,766	+		CSW01_13970	0.47	+0.5
2,974,766	-		CSW01_13970	0.47	+1.0
2,974,775	-		CSW01_13970	0.47	+1.0
2,974,787	-		CSW01_13970	0.48	+1.9
2,974,789	+		CSW01_13970	0.48	+0.3
2,974,789	+		CSW01_13970	0.48	-0.8
2,974,789	+		CSW01_13970	0.48	-0.5
2,974,789	+		CSW01_13970	0.48	-2.0
2,974,789	+		CSW01_13970	0.48	-0.2
2,974,789	+		CSW01_13970	0.48	-0.3
2,974,789	+		CSW01_13970	0.48	+1.6
2,974,789	+		CSW01_13970	0.48	+1.4
2,974,789	+		CSW01_13970	0.48	+0.1
2,974,789	+		CSW01_13970	0.48	-4.0
2,974,789	+		CSW01_13970	0.48	+0.2
2,974,789	+		CSW01_13970	0.48	-1.6
2,974,789	+		CSW01_13970	0.48	+0.9
2,974,789	+		CSW01_13970	0.48	-0.7
2,974,789	+		CSW01_13970	0.48	+1.2
2,974,789	+		CSW01_13970	0.48	-4.0
2,974,789	+		CSW01_13970	0.48	-0.3
2,974,789	+		CSW01_13970	0.48	-1.1
2,974,789	+		CSW01_13970	0.48	+0.1
2,974,789	+		CSW01_13970	0.48	-2.4
2,974,789	+		CSW01_13970	0.48	-2.9
2,974,789	+		CSW01_13970	0.48	+0.5
2,974,789	+		CSW01_13970	0.48	-2.6
2,974,789	+		CSW01_13970	0.48	+1.5
2,974,789	+		CSW01_13970	0.48	-2.0
2,974,789	+		CSW01_13970	0.48	-4.3
2,974,789	+		CSW01_13970	0.48	+1.7
2,974,789	+		CSW01_13970	0.48	-3.1
2,974,789	+		CSW01_13970	0.48	+0.2
2,974,789	+		CSW01_13970	0.48	+0.7
2,974,789	+		CSW01_13970	0.48	-1.6
2,974,789	+		CSW01_13970	0.48	+0.6
2,974,789	+		CSW01_13970	0.48	+1.5
2,974,789	+		CSW01_13970	0.48	-1.0
2,974,789	+		CSW01_13970	0.48	+0.7
2,974,789	+		CSW01_13970	0.48	-2.1
2,974,789	+		CSW01_13970	0.48	+2.1
2,974,789	+		CSW01_13970	0.48	+0.8
2,974,789	+		CSW01_13970	0.48	+0.7
2,974,789	+		CSW01_13970	0.48	+1.3
2,974,789	+		CSW01_13970	0.48	+0.6
2,974,789	+		CSW01_13970	0.48	+1.4
2,974,789	+		CSW01_13970	0.48	+0.4
2,974,789	+		CSW01_13970	0.48	-1.0
2,974,789	+		CSW01_13970	0.48	+1.5
2,974,789	+		CSW01_13970	0.48	+1.8
2,974,789	+		CSW01_13970	0.48	+0.2
2,974,789	+		CSW01_13970	0.48	+0.4
2,974,789	+		CSW01_13970	0.48	+1.5
2,974,789	+		CSW01_13970	0.48	+0.2
2,974,789	+		CSW01_13970	0.48	+1.3
2,974,789	+		CSW01_13970	0.48	-2.9
2,974,789	+		CSW01_13970	0.48	-1.2
2,974,789	+		CSW01_13970	0.48	+1.4
2,974,789	+		CSW01_13970	0.48	+0.3
2,974,789	+		CSW01_13970	0.48	+1.8
2,974,789	+		CSW01_13970	0.48	+0.9
2,974,789	+		CSW01_13970	0.48	+0.6
2,974,789	+		CSW01_13970	0.48	+1.5
2,974,789	+		CSW01_13970	0.48	-4.4
2,974,789	+		CSW01_13970	0.48	+1.7
2,974,789	+		CSW01_13970	0.48	-0.2
2,974,789	+		CSW01_13970	0.48	+0.0
2,974,789	+		CSW01_13970	0.48	-2.4
2,974,789	+		CSW01_13970	0.48	+1.4
2,974,789	+		CSW01_13970	0.48	+0.6
2,974,789	+		CSW01_13970	0.48	+0.7
2,974,789	+		CSW01_13970	0.48	-3.7
2,974,789	+		CSW01_13970	0.48	-0.1
2,974,789	+		CSW01_13970	0.48	+0.6
2,974,789	+		CSW01_13970	0.48	-3.0
2,974,789	+		CSW01_13970	0.48	-2.4
2,974,789	+		CSW01_13970	0.48	-4.1
2,974,789	+		CSW01_13970	0.48	+0.8
2,974,789	+		CSW01_13970	0.48	-2.9
2,974,789	+		CSW01_13970	0.48	-3.5
2,974,789	+		CSW01_13970	0.48	-2.9
2,974,789	+		CSW01_13970	0.48	-0.2
2,974,789	+		CSW01_13970	0.48	+1.5
2,974,797	-		CSW01_13970	0.48	-0.3
2,974,797	-		CSW01_13970	0.48	-0.9
2,974,797	-		CSW01_13970	0.48	-1.4
2,974,797	-		CSW01_13970	0.48	+1.0
2,974,797	-		CSW01_13970	0.48	-1.2
2,974,797	-		CSW01_13970	0.48	+0.3
2,974,797	-		CSW01_13970	0.48	+0.3
2,974,797	-		CSW01_13970	0.48	-0.3
2,974,797	-		CSW01_13970	0.48	-0.0
2,974,797	-		CSW01_13970	0.48	-1.1
2,974,797	-		CSW01_13970	0.48	-0.1
2,974,797	-		CSW01_13970	0.48	+1.5
2,974,797	-		CSW01_13970	0.48	-0.8
2,974,797	-		CSW01_13970	0.48	+0.4
2,974,797	-		CSW01_13970	0.48	-1.3
2,974,797	-		CSW01_13970	0.48	+0.4
2,974,797	-		CSW01_13970	0.48	+0.9
2,974,797	-		CSW01_13970	0.48	-2.1
2,974,797	-		CSW01_13970	0.48	+1.8
2,974,797	-		CSW01_13970	0.48	+0.0
2,974,797	-		CSW01_13970	0.48	+0.3
2,974,797	-		CSW01_13970	0.48	+1.4
2,974,797	-		CSW01_13970	0.48	+1.7
2,974,797	-		CSW01_13970	0.48	-2.9
2,974,797	-		CSW01_13970	0.48	+0.2
2,974,797	-		CSW01_13970	0.48	-0.4
2,974,797	-		CSW01_13970	0.48	+0.9
2,974,797	-		CSW01_13970	0.48	+0.5
2,974,797	-		CSW01_13970	0.48	+1.1
2,974,797	-		CSW01_13970	0.48	-2.6
2,974,797	-		CSW01_13970	0.48	+1.5
2,974,797	-		CSW01_13970	0.48	-0.0
2,974,797	-		CSW01_13970	0.48	+1.8
2,974,797	-		CSW01_13970	0.48	+0.3
2,974,797	-		CSW01_13970	0.48	-3.6
2,974,797	-		CSW01_13970	0.48	+0.6
2,974,797	-		CSW01_13970	0.48	+0.3
2,974,797	-		CSW01_13970	0.48	-0.4
2,974,797	-		CSW01_13970	0.48	-0.7
2,974,797	-		CSW01_13970	0.48	+0.8
2,974,797	-		CSW01_13970	0.48	-0.1
2,974,797	-		CSW01_13970	0.48	-1.1
2,974,797	-		CSW01_13970	0.48	-3.1
2,974,797	-		CSW01_13970	0.48	+1.2
2,974,797	-		CSW01_13970	0.48	-1.8
2,974,797	-		CSW01_13970	0.48	-1.6
2,974,797	-		CSW01_13970	0.48	-1.1
2,974,797	-		CSW01_13970	0.48	-1.8
2,974,797	-		CSW01_13970	0.48	+1.2
2,974,797	-		CSW01_13970	0.48	-0.4
2,974,797	-		CSW01_13970	0.48	-0.8
2,974,797	-		CSW01_13970	0.48	-2.7
2,974,797	-		CSW01_13970	0.48	+1.3
2,974,797	-		CSW01_13970	0.48	-2.0
2,974,797	-		CSW01_13970	0.48	+0.4
2,974,797	-		CSW01_13970	0.48	-0.9
2,974,797	-		CSW01_13970	0.48	+1.6
2,974,797	-		CSW01_13970	0.48	-3.7
2,974,797	-		CSW01_13970	0.48	+1.2
2,974,797	-		CSW01_13970	0.48	+0.1
2,974,797	-		CSW01_13970	0.48	-2.1
2,974,797	-		CSW01_13970	0.48	+2.3
2,974,797	-		CSW01_13970	0.48	+0.8
2,974,797	-		CSW01_13970	0.48	+0.4
2,974,797	-		CSW01_13970	0.48	+0.9
2,974,797	-		CSW01_13970	0.48	-3.5
2,974,797	-		CSW01_13970	0.48	-2.7
2,974,797	-		CSW01_13970	0.48	+1.0
2,974,797	-		CSW01_13970	0.48	-0.2
2,974,797	-		CSW01_13970	0.48	+0.3
2,974,797	-		CSW01_13970	0.48	+0.9
2,974,797	-		CSW01_13970	0.48	+1.5
2,974,797	-		CSW01_13970	0.48	+5.0
2,974,797	-		CSW01_13970	0.48	+1.2
2,974,797	-		CSW01_13970	0.48	+0.5
2,974,797	-		CSW01_13970	0.48	+1.2
2,974,797	-		CSW01_13970	0.48	-0.5
2,974,797	-		CSW01_13970	0.48	-0.9
2,974,833	+		CSW01_13970	0.50	+0.1
2,974,833	+		CSW01_13970	0.50	+0.5
2,974,850	+		CSW01_13970	0.51	+0.1
2,974,901	+		CSW01_13970	0.53	+0.3
2,974,909	-		CSW01_13970	0.54	-0.2
2,974,909	-		CSW01_13970	0.54	-2.9
2,974,912	+		CSW01_13970	0.54	-0.3
2,974,934	-		CSW01_13970	0.55	+0.6
2,974,974	+		CSW01_13970	0.57	+1.3
2,974,974	+		CSW01_13970	0.57	+0.8
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2,974,982	-		CSW01_13970	0.57	+1.0
2,974,982	-		CSW01_13970	0.57	+1.6
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2,974,982	-		CSW01_13970	0.57	+0.2
2,974,982	-		CSW01_13970	0.57	-1.0
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2,974,992	+		CSW01_13970	0.57	-2.1
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2,974,997	+		CSW01_13970	0.58	+1.2
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2,975,000	-		CSW01_13970	0.58	-4.1
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2,975,041	+		CSW01_13970	0.60	+2.1
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2,975,107	-		CSW01_13970	0.63	+0.3
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2,975,107	-		CSW01_13970	0.63	-2.6
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2,975,107	-		CSW01_13970	0.63	-2.8
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2,975,152	+		CSW01_13970	0.65	+1.1
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2,975,152	+		CSW01_13970	0.65	-0.3
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2,975,160	-		CSW01_13970	0.65	+1.1
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2,975,160	-		CSW01_13970	0.65	-3.6
2,975,160	-		CSW01_13970	0.65	-4.4
2,975,160	-		CSW01_13970	0.65	-2.3
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2,975,160	-		CSW01_13970	0.65	+1.1
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2,975,280	-		CSW01_13970	0.71	+1.0
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2,975,330	-		CSW01_13970	0.73	+0.1
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2,975,373	-		CSW01_13970	0.75	+1.4
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2,975,519	+		CSW01_13970	0.82	-1.0
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2,975,608	+		CSW01_13970	0.86	-2.2
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2,975,608	+		CSW01_13970	0.86	-0.4
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2,975,609	-		CSW01_13970	0.86	-2.2
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2,975,616	-		CSW01_13970	0.86	+1.0
2,975,616	-		CSW01_13970	0.86	+2.1
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2,975,623	+		CSW01_13970	0.87	-1.0
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2,975,631	-		CSW01_13970	0.87	+0.4
2,975,631	-		CSW01_13970	0.87	+0.5
2,975,661	+		CSW01_13970	0.88	+0.1
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2,975,666	+		CSW01_13970	0.88	-0.3
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2,975,671	+		CSW01_13970	0.89	+0.1
2,975,671	+		CSW01_13970	0.89	-0.4
2,975,671	+		CSW01_13970	0.89	-4.2
2,975,671	+		CSW01_13970	0.89	-0.1
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2,975,674	-		CSW01_13970	0.89	+1.9
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2,975,679	-		CSW01_13970	0.89	-0.1
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2,975,720	+				-2.4
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2,975,723	-				-1.9
2,975,728	+				+0.8
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2,975,729	-				+0.6
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2,975,744	+				+1.0
2,975,754	+				-0.1
2,975,754	+				-4.2
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2,975,834	+				-0.1
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2,975,842	-				+2.0
2,975,880	+				+0.8
2,975,880	+				+0.5
2,975,898	-				-4.2
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2,975,988	+				-0.4
2,976,073	-		CSW01_13975	0.11	-2.1
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2,976,122	+		CSW01_13975	0.16	+2.7
2,976,122	+		CSW01_13975	0.16	+1.6
2,976,122	+		CSW01_13975	0.16	-1.4
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2,976,122	+		CSW01_13975	0.16	-2.7
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2,976,130	-		CSW01_13975	0.16	-0.1
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2,976,130	-		CSW01_13975	0.16	-2.5
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2,976,147	+		CSW01_13975	0.18	+2.1
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2,976,155	-		CSW01_13975	0.18	-2.9
2,976,155	-		CSW01_13975	0.18	-3.0
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2,976,298	-		CSW01_13975	0.31	-2.3
2,976,298	-		CSW01_13975	0.31	+2.3
2,976,298	-		CSW01_13975	0.31	+1.0
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2,976,348	+		CSW01_13975	0.35	-1.2
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2,976,356	-		CSW01_13975	0.36	+1.5
2,976,356	-		CSW01_13975	0.36	+0.7
2,976,356	-		CSW01_13975	0.36	-1.0
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2,976,360	+		CSW01_13975	0.36	+1.4
2,976,360	+		CSW01_13975	0.36	+1.0
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2,976,651	+		CSW01_13975	0.61	+1.1
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2,976,788	+		CSW01_13975	0.73	-1.4
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2,976,804	+		CSW01_13975	0.74	+0.2
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2,976,840	+		CSW01_13975	0.77	+1.0
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2,976,840	+		CSW01_13975	0.77	+0.1
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2,976,848	-		CSW01_13975	0.78	+1.9
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2,976,909	-		CSW01_13975	0.83	-4.2
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2,976,909	-		CSW01_13975	0.83	-1.6
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