Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_12930

Experiment: ICP1_phage_235.3_MOI_rep2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	ICP1_phage_235.3_MOI_rep2
2,765,771	+		CSW01_12920	0.58	-2.0
2,765,854	+		CSW01_12920	0.85	-2.3
2,765,865	+		CSW01_12920	0.89	+1.0
2,765,989	-				-0.4
2,766,000	+				+0.1
2,766,008	-				+1.2
2,766,025	+		CSW01_12925	0.11	-0.3
2,766,044	+		CSW01_12925	0.13	+0.2
2,766,046	+		CSW01_12925	0.14	-2.5
2,766,049	+		CSW01_12925	0.14	-0.2
2,766,052	-		CSW01_12925	0.14	-0.5
2,766,054	-		CSW01_12925	0.15	-0.5
2,766,075	-		CSW01_12925	0.18	+1.4
2,766,089	+		CSW01_12925	0.19	+1.5
2,766,096	-		CSW01_12925	0.20	+0.4
2,766,097	-		CSW01_12925	0.21	-2.9
2,766,097	-		CSW01_12925	0.21	+2.3
2,766,102	+		CSW01_12925	0.21	-1.0
2,766,137	+		CSW01_12925	0.26	+1.9
2,766,145	-		CSW01_12925	0.27	+0.0
2,766,145	-		CSW01_12925	0.27	+1.0
2,766,151	+		CSW01_12925	0.28	+0.5
2,766,151	+		CSW01_12925	0.28	-2.9
2,766,151	+		CSW01_12925	0.28	-1.2
2,766,159	-		CSW01_12925	0.29	-3.4
2,766,159	-		CSW01_12925	0.29	+0.5
2,766,189	+		CSW01_12925	0.33	-0.1
2,766,195	-		CSW01_12925	0.34	+0.5
2,766,273	+		CSW01_12925	0.45	-1.3
2,766,334	+		CSW01_12925	0.53	+2.1
2,766,342	+		CSW01_12925	0.54	+0.7
2,766,344	+		CSW01_12925	0.54	+0.3
2,766,352	-		CSW01_12925	0.56	-0.5
2,766,366	+		CSW01_12925	0.57	+0.8
2,766,367	+		CSW01_12925	0.58	+0.5
2,766,397	+		CSW01_12925	0.62	-0.8
2,766,397	+		CSW01_12925	0.62	+2.1
2,766,397	+		CSW01_12925	0.62	-0.2
2,766,406	-		CSW01_12925	0.63	-0.2
2,766,442	+		CSW01_12925	0.68	+0.9
2,766,442	+		CSW01_12925	0.68	+0.9
2,766,442	+		CSW01_12925	0.68	-1.4
2,766,450	-		CSW01_12925	0.69	-1.0
2,766,466	+		CSW01_12925	0.71	-0.5
2,766,480	-		CSW01_12925	0.73	+0.3
2,766,480	-		CSW01_12925	0.73	+2.4
2,766,487	-		CSW01_12925	0.74	-3.4
2,766,522	+		CSW01_12925	0.79	+0.3
2,766,743	+				+1.8
2,766,743	+				+0.5
2,766,778	-				+1.0
2,766,813	-				+1.2
2,766,930	-		CSW01_12930	0.24	-3.2
2,766,942	+		CSW01_12930	0.26	-0.1
2,766,985	+		CSW01_12930	0.32	+0.4
2,766,985	+		CSW01_12930	0.32	-2.7
2,766,985	+		CSW01_12930	0.32	-2.0
2,766,993	-		CSW01_12930	0.33	-2.0
2,766,993	-		CSW01_12930	0.33	-0.1
2,767,009	-		CSW01_12930	0.35	+0.8
2,767,020	+		CSW01_12930	0.37	+0.7
2,767,028	-		CSW01_12930	0.38	-0.1
2,767,028	-		CSW01_12930	0.38	+0.1
2,767,081	+		CSW01_12930	0.45	+0.2
2,767,089	-		CSW01_12930	0.46	+0.4
2,767,089	-		CSW01_12930	0.46	+0.7
2,767,089	-		CSW01_12930	0.46	+0.3
2,767,089	-		CSW01_12930	0.46	+0.1
2,767,090	+		CSW01_12930	0.46	+0.4
2,767,098	-		CSW01_12930	0.48	+0.7
2,767,110	+		CSW01_12930	0.49	+1.5
2,767,165	-		CSW01_12930	0.57	+0.0
2,767,178	-		CSW01_12930	0.59	-3.9
2,767,186	-		CSW01_12930	0.60	-0.4
2,767,188	+		CSW01_12930	0.60	+1.2
2,767,188	+		CSW01_12930	0.60	-1.2
2,767,211	-		CSW01_12930	0.63	-4.1
2,767,211	-		CSW01_12930	0.63	+0.4
2,767,271	-		CSW01_12930	0.72	-2.5
2,767,299	+		CSW01_12930	0.76	+0.3
2,767,350	-		CSW01_12930	0.83	+0.8
2,767,358	-		CSW01_12930	0.84	-1.1
2,767,358	-		CSW01_12930	0.84	+2.3
2,767,402	-				+0.1
2,767,430	+				+1.0
2,767,444	+				-0.8
2,767,444	+				+0.7
2,767,452	-				+0.7
2,767,532	-				+0.4
2,767,536	+				-1.7
2,767,536	+				+0.3
2,767,560	+				-0.1
2,767,568	-				+1.0
2,767,573	+				+1.2
2,767,573	+				+0.8
2,767,573	+				-2.8
2,767,573	+				-3.0
2,767,573	+				+1.3
2,767,573	+				-0.7
2,767,573	+				-3.4
2,767,573	+				-2.2
2,767,573	+				-0.0
2,767,581	-				-0.5
2,767,581	-				-3.1
2,767,581	-				+1.4
2,767,581	-				+2.2
2,767,581	-				-2.3
2,767,581	-				-0.1
2,767,581	-				-0.4
2,767,581	-				-1.6
2,767,581	-				+0.3
2,767,581	-				+0.6
2,767,581	-				+0.7
2,767,581	-				-2.7
2,767,581	-				-1.5
2,767,581	-				-0.2
2,767,581	-				+1.6
2,767,581	-				+1.4
2,767,581	-				+0.6
2,767,673	+		CSW01_12935	0.16	-1.5
2,767,673	+		CSW01_12935	0.16	+0.9
2,767,734	+		CSW01_12935	0.21	-0.9
2,767,752	+		CSW01_12935	0.22	-2.0
2,767,760	-		CSW01_12935	0.23	-0.3
2,767,775	-		CSW01_12935	0.24	+0.8
2,767,934	-		CSW01_12935	0.37	-0.5
2,767,990	+		CSW01_12935	0.41	-0.4
2,768,020	-		CSW01_12935	0.44	-1.2
2,768,022	-		CSW01_12935	0.44	-0.1
2,768,023	-		CSW01_12935	0.44	-2.2
2,768,086	+		CSW01_12935	0.49	-1.6
2,768,133	+		CSW01_12935	0.53	-1.4
2,768,133	+		CSW01_12935	0.53	-0.1
2,768,141	-		CSW01_12935	0.53	-3.6
2,768,141	-		CSW01_12935	0.53	+0.1
2,768,151	+		CSW01_12935	0.54	-2.9
2,768,206	-		CSW01_12935	0.58	+2.1
2,768,232	-		CSW01_12935	0.60	+0.3
2,768,232	-		CSW01_12935	0.60	+0.8
2,768,272	+		CSW01_12935	0.64	+0.5
2,768,277	+		CSW01_12935	0.64	-2.3
2,768,280	-		CSW01_12935	0.64	-2.2
2,768,285	-		CSW01_12935	0.65	-0.8
2,768,285	-		CSW01_12935	0.65	-1.2
2,768,287	+		CSW01_12935	0.65	+1.4
2,768,287	+		CSW01_12935	0.65	+0.0
2,768,287	+		CSW01_12935	0.65	-1.9
2,768,287	+		CSW01_12935	0.65	-1.2
2,768,287	+		CSW01_12935	0.65	+0.3
2,768,287	+		CSW01_12935	0.65	-0.4
2,768,287	+		CSW01_12935	0.65	-2.6
2,768,287	+		CSW01_12935	0.65	-2.6
2,768,287	+		CSW01_12935	0.65	-0.1
2,768,287	+		CSW01_12935	0.65	+2.0
2,768,287	+		CSW01_12935	0.65	-0.5
2,768,287	+		CSW01_12935	0.65	-0.4
2,768,287	+		CSW01_12935	0.65	+0.4
2,768,295	-		CSW01_12935	0.65	+0.0
2,768,295	-		CSW01_12935	0.65	+0.6
2,768,295	-		CSW01_12935	0.65	-1.4
2,768,295	-		CSW01_12935	0.65	-1.2
2,768,295	-		CSW01_12935	0.65	-0.7
2,768,303	+		CSW01_12935	0.66	-2.7
2,768,328	+		CSW01_12935	0.68	+0.5
2,768,342	-		CSW01_12935	0.69	+1.0
2,768,350	-		CSW01_12935	0.70	-2.9
2,768,392	-		CSW01_12935	0.73	+0.1
2,768,404	+		CSW01_12935	0.74	+0.0
2,768,404	+		CSW01_12935	0.74	-2.2
2,768,404	+		CSW01_12935	0.74	+1.6
2,768,404	+		CSW01_12935	0.74	-0.7
2,768,404	+		CSW01_12935	0.74	-1.1
2,768,412	-		CSW01_12935	0.75	+0.3
2,768,412	-		CSW01_12935	0.75	+1.3
2,768,412	-		CSW01_12935	0.75	-3.1
2,768,412	-		CSW01_12935	0.75	-4.1