Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_10765

Experiment: ICP1_phage_235.3_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_10755 and CSW01_10760 are separated by 277 nucleotidesCSW01_10760 and CSW01_10765 are separated by 14 nucleotidesCSW01_10765 and CSW01_10770 are separated by 101 nucleotides CSW01_10755: CSW01_10755 - 4-hydroxy-tetrahydrodipicolinate synthase, at 2,305,225 to 2,306,103 _10755 CSW01_10760: CSW01_10760 - glycine cleavage system transcriptional regulator, at 2,306,381 to 2,306,923 _10760 CSW01_10765: CSW01_10765 - thioredoxin-dependent thiol peroxidase, at 2,306,938 to 2,307,405 _10765 CSW01_10770: CSW01_10770 - methyl-accepting chemotaxis protein, at 2,307,507 to 2,309,378 _10770 Position (kb) 2306 2307 2308Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2306.124 kb on - strandat 2306.171 kb on - strandat 2306.241 kb on + strandat 2306.241 kb on + strandat 2306.241 kb on + strandat 2306.249 kb on - strandat 2306.350 kb on - strandat 2306.379 kb on + strandat 2306.387 kb on - strandat 2306.393 kb on + strandat 2306.405 kb on + strandat 2306.465 kb on - strand, within CSW01_10760at 2306.516 kb on - strand, within CSW01_10760at 2306.572 kb on + strand, within CSW01_10760at 2306.580 kb on - strand, within CSW01_10760at 2306.594 kb on + strand, within CSW01_10760at 2306.612 kb on - strand, within CSW01_10760at 2306.641 kb on - strand, within CSW01_10760at 2306.644 kb on + strand, within CSW01_10760at 2306.652 kb on - strand, within CSW01_10760at 2306.800 kb on - strand, within CSW01_10760at 2306.828 kb on + strand, within CSW01_10760at 2306.828 kb on + strand, within CSW01_10760at 2306.836 kb on - strand, within CSW01_10760at 2306.836 kb on - strand, within CSW01_10760at 2306.853 kb on - strand, within CSW01_10760at 2306.879 kb on - strandat 2306.893 kb on - strandat 2306.953 kb on + strandat 2306.984 kb on - strandat 2307.039 kb on + strand, within CSW01_10765at 2307.079 kb on + strand, within CSW01_10765at 2307.082 kb on - strand, within CSW01_10765at 2307.086 kb on + strand, within CSW01_10765at 2307.193 kb on + strand, within CSW01_10765at 2307.247 kb on + strand, within CSW01_10765at 2307.303 kb on - strand, within CSW01_10765at 2307.368 kb on + strandat 2307.447 kb on + strandat 2307.447 kb on + strandat 2307.455 kb on - strandat 2307.497 kb on + strandat 2307.497 kb on + strandat 2307.497 kb on + strandat 2307.505 kb on - strandat 2307.512 kb on + strandat 2307.512 kb on + strandat 2307.520 kb on - strandat 2307.772 kb on - strand, within CSW01_10770at 2307.777 kb on - strand, within CSW01_10770at 2307.889 kb on - strand, within CSW01_10770at 2307.896 kb on - strand, within CSW01_10770at 2307.897 kb on - strand, within CSW01_10770at 2307.897 kb on - strand, within CSW01_10770at 2307.927 kb on + strand, within CSW01_10770at 2307.954 kb on - strand, within CSW01_10770at 2307.954 kb on - strand, within CSW01_10770at 2308.037 kb on + strand, within CSW01_10770at 2308.053 kb on - strand, within CSW01_10770at 2308.053 kb on - strand, within CSW01_10770at 2308.111 kb on - strand, within CSW01_10770at 2308.146 kb on + strand, within CSW01_10770at 2308.243 kb on - strand, within CSW01_10770at 2308.243 kb on - strand, within CSW01_10770at 2308.251 kb on + strand, within CSW01_10770at 2308.259 kb on + strand, within CSW01_10770at 2308.267 kb on - strand, within CSW01_10770at 2308.285 kb on - strand, within CSW01_10770at 2308.290 kb on - strand, within CSW01_10770at 2308.298 kb on + strand, within CSW01_10770at 2308.373 kb on - strand, within CSW01_10770

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep2
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2,306,124 - +0.7
2,306,171 - +0.9
2,306,241 + -2.7
2,306,241 + -0.4
2,306,241 + +0.9
2,306,249 - +0.1
2,306,350 - -0.1
2,306,379 + -1.7
2,306,387 - -0.1
2,306,393 + +0.4
2,306,405 + -3.0
2,306,465 - CSW01_10760 0.15 -1.3
2,306,516 - CSW01_10760 0.25 -0.9
2,306,572 + CSW01_10760 0.35 -3.3
2,306,580 - CSW01_10760 0.37 +0.0
2,306,594 + CSW01_10760 0.39 +0.7
2,306,612 - CSW01_10760 0.43 -2.3
2,306,641 - CSW01_10760 0.48 -1.3
2,306,644 + CSW01_10760 0.48 +1.3
2,306,652 - CSW01_10760 0.50 +1.3
2,306,800 - CSW01_10760 0.77 -1.4
2,306,828 + CSW01_10760 0.82 +2.4
2,306,828 + CSW01_10760 0.82 -3.0
2,306,836 - CSW01_10760 0.84 -0.3
2,306,836 - CSW01_10760 0.84 +1.4
2,306,853 - CSW01_10760 0.87 +1.1
2,306,879 - -0.1
2,306,893 - +0.0
2,306,953 + +0.6
2,306,984 - +0.9
2,307,039 + CSW01_10765 0.22 +0.0
2,307,079 + CSW01_10765 0.30 +0.8
2,307,082 - CSW01_10765 0.31 +0.5
2,307,086 + CSW01_10765 0.32 +2.5
2,307,193 + CSW01_10765 0.54 +2.0
2,307,247 + CSW01_10765 0.66 -1.1
2,307,303 - CSW01_10765 0.78 +0.3
2,307,368 + +1.5
2,307,447 + -0.4
2,307,447 + -0.2
2,307,455 - +1.2
2,307,497 + +1.0
2,307,497 + +0.7
2,307,497 + +1.8
2,307,505 - -4.1
2,307,512 + -2.3
2,307,512 + -0.1
2,307,520 - +1.3
2,307,772 - CSW01_10770 0.14 +0.1
2,307,777 - CSW01_10770 0.14 -0.2
2,307,889 - CSW01_10770 0.20 -0.2
2,307,896 - CSW01_10770 0.21 +1.1
2,307,897 - CSW01_10770 0.21 +2.1
2,307,897 - CSW01_10770 0.21 +1.2
2,307,927 + CSW01_10770 0.22 +1.5
2,307,954 - CSW01_10770 0.24 -0.2
2,307,954 - CSW01_10770 0.24 +1.0
2,308,037 + CSW01_10770 0.28 +1.4
2,308,053 - CSW01_10770 0.29 -0.2
2,308,053 - CSW01_10770 0.29 +1.3
2,308,111 - CSW01_10770 0.32 +0.6
2,308,146 + CSW01_10770 0.34 +0.6
2,308,243 - CSW01_10770 0.39 +0.6
2,308,243 - CSW01_10770 0.39 +1.7
2,308,251 + CSW01_10770 0.40 -1.1
2,308,259 + CSW01_10770 0.40 +0.2
2,308,267 - CSW01_10770 0.41 -2.7
2,308,285 - CSW01_10770 0.42 +0.7
2,308,290 - CSW01_10770 0.42 -0.0
2,308,298 + CSW01_10770 0.42 +0.7
2,308,373 - CSW01_10770 0.46 +1.1

Or see this region's nucleotide sequence