Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_08145

Experiment: ICP1_phage_235.3_MOI_rep2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	ICP1_phage_235.3_MOI_rep2
1,730,777	+		CSW01_08135	0.87	-2.8
1,730,787	+		CSW01_08135	0.88	-0.2
1,730,787	+		CSW01_08135	0.88	+0.2
1,730,809	+		CSW01_08135	0.89	+1.0
1,730,943	+				+0.1
1,730,949	-				-1.3
1,731,273	+		CSW01_08140	0.51	-0.9
1,731,363	+		CSW01_08140	0.67	+1.2
1,731,470	+		CSW01_08140	0.87	-0.6
1,731,485	+		CSW01_08140	0.89	+0.6
1,731,776	+				-0.4
1,731,784	-				+0.8
1,731,943	+				-0.5
1,731,969	-				-1.9
1,732,064	+				-0.6
1,732,067	+				-4.1
1,732,067	+				-1.3
1,732,067	+				+1.1
1,732,075	-				+2.1
1,732,075	-				-0.3
1,732,091	+				+1.1
1,732,135	+				+0.8
1,732,484	+				-0.1
1,732,492	-				+0.6
1,732,492	-				-2.3
1,732,510	+		CSW01_08145	0.10	-0.0
1,732,574	-		CSW01_08145	0.11	-0.2
1,732,604	-		CSW01_08145	0.11	-1.9
1,732,606	+		CSW01_08145	0.11	+0.2
1,732,606	+		CSW01_08145	0.11	+0.9
1,732,633	+		CSW01_08145	0.12	+1.1
1,732,695	-		CSW01_08145	0.12	-0.3
1,732,745	+		CSW01_08145	0.13	-2.8
1,733,053	+		CSW01_08145	0.17	-0.3
1,733,053	+		CSW01_08145	0.17	-0.7
1,733,053	+		CSW01_08145	0.17	+0.3
1,733,053	+		CSW01_08145	0.17	-0.8
1,733,061	-		CSW01_08145	0.17	-1.7
1,733,061	-		CSW01_08145	0.17	-0.1
1,733,092	+		CSW01_08145	0.17	-0.2
1,733,097	+		CSW01_08145	0.17	+0.3
1,733,097	+		CSW01_08145	0.17	-0.2
1,733,097	+		CSW01_08145	0.17	-1.4
1,733,105	-		CSW01_08145	0.17	+0.8
1,733,105	-		CSW01_08145	0.17	+0.1
1,733,105	-		CSW01_08145	0.17	+0.4
1,733,105	-		CSW01_08145	0.17	-1.9
1,733,185	-		CSW01_08145	0.18	-2.1
1,733,324	+		CSW01_08145	0.20	+1.8
1,733,332	-		CSW01_08145	0.20	-0.1
1,733,554	-		CSW01_08145	0.22	+0.2
1,733,620	-		CSW01_08145	0.23	+1.1
1,733,734	-		CSW01_08145	0.25	+1.1
1,733,754	+		CSW01_08145	0.25	-0.6
1,734,076	+		CSW01_08145	0.29	+0.4
1,734,084	-		CSW01_08145	0.29	-0.0
1,734,116	-		CSW01_08145	0.29	+0.9
1,734,252	-		CSW01_08145	0.31	-1.0
1,734,349	-		CSW01_08145	0.32	+0.5
1,734,369	-		CSW01_08145	0.32	+0.0
1,734,369	-		CSW01_08145	0.32	+1.4
1,734,369	-		CSW01_08145	0.32	-2.6
1,734,369	-		CSW01_08145	0.32	+0.0
1,734,380	+		CSW01_08145	0.32	+0.2
1,734,380	-		CSW01_08145	0.32	-1.3
1,734,390	+		CSW01_08145	0.32	-1.4
1,734,419	+		CSW01_08145	0.33	-2.2
1,734,478	+		CSW01_08145	0.33	+0.2
1,734,486	-		CSW01_08145	0.33	-0.4
1,734,497	-		CSW01_08145	0.34	+1.2
1,734,533	-		CSW01_08145	0.34	-0.5
1,734,605	+		CSW01_08145	0.35	-1.1
1,734,605	+		CSW01_08145	0.35	+0.4
1,734,613	-		CSW01_08145	0.35	+0.5
1,734,613	-		CSW01_08145	0.35	-2.1
1,734,637	-		CSW01_08145	0.35	+0.0
1,734,822	-		CSW01_08145	0.37	-1.7
1,734,822	-		CSW01_08145	0.37	-0.6
1,734,822	-		CSW01_08145	0.37	-1.0
1,734,893	+		CSW01_08145	0.38	-2.1
1,734,901	-		CSW01_08145	0.38	+0.2
1,734,901	-		CSW01_08145	0.38	+0.2
1,734,955	+		CSW01_08145	0.39	+1.6
1,735,060	+		CSW01_08145	0.40	-0.0
1,735,068	-		CSW01_08145	0.40	+0.5
1,735,083	+		CSW01_08145	0.40	-1.9
1,735,135	+		CSW01_08145	0.41	+0.7
1,735,143	-		CSW01_08145	0.41	-0.5
1,735,165	+		CSW01_08145	0.41	+1.6
1,735,171	-		CSW01_08145	0.42	+0.6
1,735,171	-		CSW01_08145	0.42	+0.0
1,735,171	-		CSW01_08145	0.42	-0.5
1,735,198	-		CSW01_08145	0.42	-2.2
1,735,217	+		CSW01_08145	0.42	-0.5
1,735,323	+		CSW01_08145	0.43	+0.8
1,735,323	+		CSW01_08145	0.43	-0.2
1,735,323	+		CSW01_08145	0.43	+0.3
1,735,323	+		CSW01_08145	0.43	-1.7
1,735,331	-		CSW01_08145	0.43	-1.1
1,735,331	-		CSW01_08145	0.43	+0.6
1,735,399	-		CSW01_08145	0.44	-0.7
1,737,846	+		CSW01_08145	0.73	-0.1
1,737,854	+		CSW01_08145	0.73	+1.3
1,737,974	+		CSW01_08145	0.75	-0.9
1,738,062	+		CSW01_08145	0.76	+0.7
1,738,065	-		CSW01_08145	0.76	-1.8
1,738,107	+		CSW01_08145	0.76	+0.1
1,738,107	+		CSW01_08145	0.76	+1.1
1,738,115	-		CSW01_08145	0.76	-0.9
1,738,115	-		CSW01_08145	0.76	-0.9
1,738,278	-		CSW01_08145	0.78	+1.4
1,738,278	-		CSW01_08145	0.78	-0.2
1,738,303	+		CSW01_08145	0.79	+2.2
1,738,339	+		CSW01_08145	0.79	-1.3
1,738,374	+		CSW01_08145	0.79	-0.7
1,738,380	-		CSW01_08145	0.79	-0.1
1,738,384	+		CSW01_08145	0.79	-0.1
1,738,384	+		CSW01_08145	0.79	+0.7
1,738,415	-		CSW01_08145	0.80	-1.1
1,738,434	+		CSW01_08145	0.80	-3.8
1,738,449	-		CSW01_08145	0.80	-0.2
1,738,511	+		CSW01_08145	0.81	-0.6
1,738,627	+		CSW01_08145	0.82	+2.5
1,738,700	+		CSW01_08145	0.83	+1.0
1,738,700	+		CSW01_08145	0.83	-2.7
1,738,715	-		CSW01_08145	0.83	+0.5
1,738,726	+		CSW01_08145	0.83	-1.7
1,738,739	+		CSW01_08145	0.84	-0.4
1,738,749	-		CSW01_08145	0.84	+1.2
1,738,784	-		CSW01_08145	0.84	-0.7
1,738,784	-		CSW01_08145	0.84	+1.7
1,738,784	-		CSW01_08145	0.84	+0.3
1,738,920	+		CSW01_08145	0.86	+1.1
1,738,928	-		CSW01_08145	0.86	-2.2
1,738,928	-		CSW01_08145	0.86	-1.1
1,738,928	-		CSW01_08145	0.86	-1.7
1,738,944	-		CSW01_08145	0.86	+1.1
1,738,947	+		CSW01_08145	0.86	-2.4
1,738,960	+		CSW01_08145	0.86	+0.4
1,738,989	-		CSW01_08145	0.87	+1.0
1,739,005	-		CSW01_08145	0.87	-0.1
1,739,046	-		CSW01_08145	0.87	+1.2
1,739,055	+		CSW01_08145	0.87	+0.1
1,739,083	+		CSW01_08145	0.88	+0.3
1,739,083	+		CSW01_08145	0.88	+2.3
1,739,150	-		CSW01_08145	0.89	+0.6
1,739,153	+		CSW01_08145	0.89	-1.7
1,739,161	-		CSW01_08145	0.89	-1.1
1,739,166	-		CSW01_08145	0.89	-1.1
1,739,166	-		CSW01_08145	0.89	+0.2
1,739,166	-		CSW01_08145	0.89	-1.7
1,739,166	-		CSW01_08145	0.89	+0.1
1,739,171	-		CSW01_08145	0.89	-0.6
1,739,223	+		CSW01_08145	0.89	-1.1
1,739,238	-		CSW01_08145	0.90	-0.9
1,739,267	-		CSW01_08145	0.90	-0.9
1,739,320	+				-0.3
1,739,328	-				-0.7
1,739,402	-				+1.9
1,739,430	-				-2.4
1,739,511	+				+1.5
1,739,520	-				-2.5
1,739,567	+				+1.1
1,739,578	+				-0.6
1,739,721	+				-0.2
1,739,752	-				-3.3
1,739,815	+				-1.9
1,739,847	-				-1.5
1,739,870	-				-1.0
1,739,870	-				+1.6
1,739,885	+				-0.4
1,739,921	+				+0.7
1,739,929	-				+1.3
1,739,929	-				+0.6
1,739,933	+				+0.9
1,739,962	+				-0.8
1,740,252	+				-0.2
1,740,434	-				+0.7
1,740,522	+				+0.5
1,740,527	+				-1.6
1,740,535	-				+0.2
1,740,540	-				+1.3
1,740,588	+				-1.7
1,740,753	-		CSW01_08150	0.17	-0.0
1,740,770	-		CSW01_08150	0.19	-3.8
1,740,821	+		CSW01_08150	0.22	+0.6
1,740,829	-		CSW01_08150	0.23	+0.6
1,740,829	-		CSW01_08150	0.23	-1.2
1,740,840	+		CSW01_08150	0.24	+0.2
1,740,848	-		CSW01_08150	0.25	+0.0
1,740,873	+		CSW01_08150	0.26	-0.5
1,740,920	-		CSW01_08150	0.30	+0.4
1,741,070	-		CSW01_08150	0.41	-0.6
1,741,103	-		CSW01_08150	0.44	-2.4