Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_07245

Experiment: ICP1_phage_235.3_MOI_rep2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	ICP1_phage_235.3_MOI_rep2
1,539,218	-		CSW01_07240	0.19	-0.5
1,539,243	-		CSW01_07240	0.21	+1.2
1,539,298	-		CSW01_07240	0.25	+0.7
1,539,302	+		CSW01_07240	0.26	-0.0
1,539,302	+		CSW01_07240	0.26	+0.6
1,539,302	+		CSW01_07240	0.26	-0.9
1,539,302	+		CSW01_07240	0.26	-0.5
1,539,310	-		CSW01_07240	0.26	-1.0
1,539,373	-		CSW01_07240	0.31	-1.0
1,539,402	+		CSW01_07240	0.34	+0.5
1,539,618	-		CSW01_07240	0.52	-0.4
1,539,628	-		CSW01_07240	0.52	+0.4
1,539,630	-		CSW01_07240	0.53	+0.9
1,539,659	+		CSW01_07240	0.55	-2.7
1,539,659	+		CSW01_07240	0.55	-1.9
1,539,659	+		CSW01_07240	0.55	+0.3
1,539,659	+		CSW01_07240	0.55	-2.2
1,539,666	-		CSW01_07240	0.56	-2.9
1,539,673	-		CSW01_07240	0.56	-2.1
1,539,785	+		CSW01_07240	0.65	+0.8
1,539,785	+		CSW01_07240	0.65	+0.1
1,539,785	+		CSW01_07240	0.65	-0.1
1,539,793	-		CSW01_07240	0.66	-1.2
1,539,806	+		CSW01_07240	0.67	-2.0
1,539,819	+		CSW01_07240	0.68	+0.1
1,539,827	-		CSW01_07240	0.69	+0.8
1,539,827	-		CSW01_07240	0.69	+0.6
1,539,827	-		CSW01_07240	0.69	+0.6
1,539,842	-		CSW01_07240	0.70	-1.0
1,539,872	+		CSW01_07240	0.72	+2.5
1,539,910	-		CSW01_07240	0.76	+0.9
1,540,021	+		CSW01_07240	0.85	-0.2
1,540,029	-		CSW01_07240	0.85	-0.0
1,540,046	-		CSW01_07240	0.87	-0.5
1,540,049	+		CSW01_07240	0.87	-2.7
1,540,052	-		CSW01_07240	0.87	-0.8
1,540,090	+				-1.9
1,540,090	+				-0.6
1,540,090	+				-3.0
1,540,090	+				+1.0
1,540,098	-				-0.1
1,540,098	-				+1.2
1,540,098	-				-0.1
1,540,122	+				-0.9
1,540,130	+				+1.7
1,540,138	-				-0.9
1,540,255	-				-0.8
1,540,265	+				-1.2
1,540,265	+				-1.0
1,540,276	+				-1.3
1,540,291	+				-1.1
1,540,291	+				+0.2
1,540,296	+				-1.3
1,540,299	-				-0.8
1,540,299	-				-3.2
1,540,304	-				-2.5
1,540,309	-				-1.2
1,540,339	-				-1.1
1,540,423	+		CSW01_07245	0.13	-0.5
1,540,465	-		CSW01_07245	0.15	-0.1
1,540,513	+		CSW01_07245	0.18	+1.8
1,540,515	+		CSW01_07245	0.18	+0.6
1,540,515	+		CSW01_07245	0.18	-1.3
1,540,521	-		CSW01_07245	0.18	-1.2
1,540,523	-		CSW01_07245	0.19	-0.7
1,540,530	-		CSW01_07245	0.19	-0.3
1,540,539	+		CSW01_07245	0.19	+0.9
1,540,539	+		CSW01_07245	0.19	-0.5
1,540,571	+		CSW01_07245	0.21	+1.5
1,540,579	-		CSW01_07245	0.22	-1.8
1,540,579	-		CSW01_07245	0.22	-0.2
1,540,596	+		CSW01_07245	0.23	+1.1
1,540,606	+		CSW01_07245	0.23	+0.1
1,540,640	+		CSW01_07245	0.25	-1.4
1,540,640	+		CSW01_07245	0.25	+0.0
1,540,640	+		CSW01_07245	0.25	+0.4
1,540,650	+		CSW01_07245	0.26	-2.5
1,540,658	-		CSW01_07245	0.26	-0.0
1,540,658	-		CSW01_07245	0.26	+0.4
1,540,658	-		CSW01_07245	0.26	-2.3
1,540,680	-		CSW01_07245	0.28	-0.7
1,540,722	+		CSW01_07245	0.30	-0.4
1,540,730	-		CSW01_07245	0.31	+2.7
1,540,865	-		CSW01_07245	0.38	-1.6
1,540,870	-		CSW01_07245	0.39	+1.0
1,540,877	-		CSW01_07245	0.39	-0.8
1,540,877	-		CSW01_07245	0.39	+0.6
1,540,879	+		CSW01_07245	0.39	-0.0
1,540,887	-		CSW01_07245	0.40	-1.1
1,540,921	+		CSW01_07245	0.42	+1.3
1,540,931	-		CSW01_07245	0.42	+0.4
1,541,013	-		CSW01_07245	0.47	+1.3
1,541,039	-		CSW01_07245	0.49	+0.8
1,541,109	+		CSW01_07245	0.53	+1.4
1,541,109	+		CSW01_07245	0.53	-0.3
1,541,109	+		CSW01_07245	0.53	-0.6
1,541,109	+		CSW01_07245	0.53	-0.5
1,541,109	+		CSW01_07245	0.53	-1.1
1,541,109	+		CSW01_07245	0.53	+1.3
1,541,109	+		CSW01_07245	0.53	+1.5
1,541,109	+		CSW01_07245	0.53	-0.6
1,541,109	+		CSW01_07245	0.53	-0.6
1,541,109	+		CSW01_07245	0.53	-0.4
1,541,109	+		CSW01_07245	0.53	-0.8
1,541,109	+		CSW01_07245	0.53	-2.9
1,541,109	+		CSW01_07245	0.53	+0.4
1,541,109	+		CSW01_07245	0.53	+0.9
1,541,109	+		CSW01_07245	0.53	+0.7
1,541,117	-		CSW01_07245	0.53	+0.8
1,541,117	-		CSW01_07245	0.53	+0.1
1,541,117	-		CSW01_07245	0.53	-2.2
1,541,117	-		CSW01_07245	0.53	-2.2
1,541,117	-		CSW01_07245	0.53	-0.4
1,541,117	-		CSW01_07245	0.53	+0.3
1,541,117	-		CSW01_07245	0.53	-0.4
1,541,117	-		CSW01_07245	0.53	+0.2
1,541,117	-		CSW01_07245	0.53	+1.4
1,541,117	-		CSW01_07245	0.53	-0.2
1,541,152	+		CSW01_07245	0.55	-1.2
1,541,153	+		CSW01_07245	0.55	+0.1
1,541,160	+		CSW01_07245	0.56	-0.6
1,541,173	-		CSW01_07245	0.56	-0.3
1,541,180	+		CSW01_07245	0.57	-1.4
1,541,180	+		CSW01_07245	0.57	+0.0
1,541,180	+		CSW01_07245	0.57	+0.1
1,541,188	-		CSW01_07245	0.57	+0.1
1,541,188	-		CSW01_07245	0.57	+0.1
1,541,188	-		CSW01_07245	0.57	-1.8
1,541,251	+		CSW01_07245	0.61	+0.4
1,541,251	+		CSW01_07245	0.61	+0.7
1,541,251	+		CSW01_07245	0.61	+0.3
1,541,251	+		CSW01_07245	0.61	+1.3
1,541,251	+		CSW01_07245	0.61	-0.9
1,541,251	+		CSW01_07245	0.61	-0.5
1,541,253	-		CSW01_07245	0.61	-0.8
1,541,257	+		CSW01_07245	0.61	-3.6
1,541,259	-		CSW01_07245	0.61	-3.2
1,541,259	-		CSW01_07245	0.61	-0.4
1,541,259	-		CSW01_07245	0.61	-1.2
1,541,259	-		CSW01_07245	0.61	+0.4
1,541,259	-		CSW01_07245	0.61	-2.6
1,541,259	-		CSW01_07245	0.61	+0.7
1,541,259	-		CSW01_07245	0.61	-0.3
1,541,259	-		CSW01_07245	0.61	+0.6
1,541,259	-		CSW01_07245	0.61	-0.8
1,541,259	-		CSW01_07245	0.61	+0.9
1,541,342	+		CSW01_07245	0.66	-0.4
1,541,389	+		CSW01_07245	0.69	-0.1
1,541,389	+		CSW01_07245	0.69	-0.3
1,541,389	+		CSW01_07245	0.69	+0.3
1,541,389	+		CSW01_07245	0.69	-2.7
1,541,389	+		CSW01_07245	0.69	-2.1
1,541,389	+		CSW01_07245	0.69	-0.3
1,541,389	+		CSW01_07245	0.69	+1.2
1,541,389	+		CSW01_07245	0.69	+0.0
1,541,389	+		CSW01_07245	0.69	-0.5
1,541,389	+		CSW01_07245	0.69	+0.1
1,541,389	+		CSW01_07245	0.69	-3.1
1,541,389	+		CSW01_07245	0.69	-1.9
1,541,389	+		CSW01_07245	0.69	+0.1
1,541,389	+		CSW01_07245	0.69	+0.8
1,541,389	+		CSW01_07245	0.69	-0.3
1,541,389	+		CSW01_07245	0.69	+0.7
1,541,389	+		CSW01_07245	0.69	+1.4
1,541,389	+		CSW01_07245	0.69	-0.1
1,541,389	+		CSW01_07245	0.69	-1.5
1,541,389	+		CSW01_07245	0.69	-0.4
1,541,389	+		CSW01_07245	0.69	+1.4
1,541,389	+		CSW01_07245	0.69	-0.0
1,541,389	+		CSW01_07245	0.69	+0.6
1,541,389	+		CSW01_07245	0.69	+0.3
1,541,389	+		CSW01_07245	0.69	-1.7
1,541,389	+		CSW01_07245	0.69	+1.0
1,541,389	+		CSW01_07245	0.69	-2.4
1,541,389	+		CSW01_07245	0.69	+0.3
1,541,389	+		CSW01_07245	0.69	+1.1
1,541,389	+		CSW01_07245	0.69	+0.9
1,541,389	+		CSW01_07245	0.69	-1.8
1,541,389	+		CSW01_07245	0.69	+0.3
1,541,390	+		CSW01_07245	0.69	+0.3
1,541,397	-		CSW01_07245	0.69	-0.1
1,541,397	-		CSW01_07245	0.69	+0.7
1,541,397	-		CSW01_07245	0.69	-1.7
1,541,397	-		CSW01_07245	0.69	+0.5
1,541,397	-		CSW01_07245	0.69	+0.9
1,541,397	-		CSW01_07245	0.69	-0.0
1,541,397	-		CSW01_07245	0.69	+0.7
1,541,397	-		CSW01_07245	0.69	-0.6
1,541,397	-		CSW01_07245	0.69	+0.5
1,541,397	-		CSW01_07245	0.69	-1.8
1,541,397	-		CSW01_07245	0.69	+0.9
1,541,397	-		CSW01_07245	0.69	+1.4
1,541,397	-		CSW01_07245	0.69	-2.5
1,541,397	-		CSW01_07245	0.69	-0.9
1,541,397	-		CSW01_07245	0.69	-1.0
1,541,397	-		CSW01_07245	0.69	+0.1
1,541,397	-		CSW01_07245	0.69	-0.0
1,541,397	-		CSW01_07245	0.69	+0.9
1,541,397	-		CSW01_07245	0.69	+1.2
1,541,397	-		CSW01_07245	0.69	-1.1
1,541,397	-		CSW01_07245	0.69	-2.0
1,541,397	-		CSW01_07245	0.69	-0.7
1,541,397	-		CSW01_07245	0.69	+0.3
1,541,397	-		CSW01_07245	0.69	+0.1
1,541,397	-		CSW01_07245	0.69	-2.8
1,541,397	-		CSW01_07245	0.69	-2.5
1,541,397	-		CSW01_07245	0.69	-0.9
1,541,397	-		CSW01_07245	0.69	+0.1
1,541,397	-		CSW01_07245	0.69	-0.3
1,541,397	-		CSW01_07245	0.69	-1.1
1,541,397	-		CSW01_07245	0.69	+0.6
1,541,446	+		CSW01_07245	0.72	+0.1
1,541,457	+		CSW01_07245	0.73	-0.7
1,541,537	-		CSW01_07245	0.78	-1.7
1,541,605	-		CSW01_07245	0.82	+1.5
1,541,749	-		CSW01_07245	0.90	+0.1
1,541,809	-				+0.7
1,541,834	+				+0.1
1,541,834	+				-0.4
1,541,842	-				+1.9
1,541,842	-				+0.3
1,541,935	+				+0.2
1,541,945	+				-0.3
1,541,945	+				+0.2
1,541,953	-				+0.2
1,541,953	-				+1.0
1,541,953	-				-0.2
1,541,953	-				-0.4
1,542,010	-				-2.2
1,542,110	+				-0.2
1,542,118	-				-1.1
1,542,128	+				+0.9
1,542,130	+				-0.7
1,542,196	+				-1.7
1,542,244	-		CSW01_07250	0.12	+0.2
1,542,281	-		CSW01_07250	0.14	+0.0
1,542,318	+		CSW01_07250	0.15	+0.4
1,542,318	+		CSW01_07250	0.15	-2.8
1,542,318	+		CSW01_07250	0.15	-0.5
1,542,424	-		CSW01_07250	0.20	-2.1
1,542,454	+		CSW01_07250	0.22	-0.9
1,542,470	-		CSW01_07250	0.22	-1.6
1,542,588	-		CSW01_07250	0.28	-0.4
1,542,635	-		CSW01_07250	0.30	+0.3
1,542,738	-		CSW01_07250	0.35	-0.1
1,542,744	-		CSW01_07250	0.35	-2.5
1,542,768	+		CSW01_07250	0.36	+0.5
1,542,782	-		CSW01_07250	0.37	+1.4
1,542,841	+		CSW01_07250	0.40	+0.9
1,542,842	+		CSW01_07250	0.40	+1.3
1,542,902	+		CSW01_07250	0.42	-1.0
1,542,902	+		CSW01_07250	0.42	-1.3
1,542,921	+		CSW01_07250	0.43	-1.4