Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_07105

Experiment: ICP1_phage_235.3_MOI_rep2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	ICP1_phage_235.3_MOI_rep2
1,512,372	+				+0.2
1,512,409	+				+0.5
1,512,474	+				+1.8
1,512,474	+				-0.1
1,512,474	+				+0.6
1,512,474	+				+0.1
1,512,474	+				+1.3
1,512,474	+				+1.0
1,512,474	+				-3.0
1,512,482	-				-0.3
1,512,482	-				-0.6
1,512,482	-				-0.1
1,512,482	-				+0.2
1,512,482	-				+0.0
1,512,482	-				-1.1
1,512,484	+				+1.0
1,512,484	+				-1.1
1,512,562	-				-0.3
1,512,576	+				-1.4
1,512,586	-		CSW01_07100	0.10	+0.3
1,512,704	+		CSW01_07100	0.24	+0.0
1,512,704	+		CSW01_07100	0.24	-2.0
1,512,712	-		CSW01_07100	0.25	+0.5
1,512,712	-		CSW01_07100	0.25	-2.0
1,512,712	-		CSW01_07100	0.25	-1.2
1,512,715	+		CSW01_07100	0.25	-1.7
1,512,747	-		CSW01_07100	0.29	-1.7
1,512,749	+		CSW01_07100	0.29	-0.1
1,512,749	+		CSW01_07100	0.29	+0.8
1,512,776	+		CSW01_07100	0.32	-1.0
1,512,808	+		CSW01_07100	0.36	+0.0
1,512,808	+		CSW01_07100	0.36	+0.6
1,512,815	-		CSW01_07100	0.37	-1.3
1,512,946	+		CSW01_07100	0.52	-1.5
1,513,100	-		CSW01_07100	0.70	-0.2
1,513,183	-		CSW01_07100	0.79	-0.7
1,513,193	-		CSW01_07100	0.81	+2.3
1,513,202	+		CSW01_07100	0.82	-0.7
1,513,210	-		CSW01_07100	0.83	-0.2
1,513,210	-		CSW01_07100	0.83	+0.5
1,513,240	+		CSW01_07100	0.86	-2.2
1,513,317	-				-0.2
1,513,352	+				-1.2
1,513,388	+				-3.2
1,513,388	+				-2.0
1,513,396	-				+1.2
1,513,396	-				+0.9
1,513,396	-				+0.5
1,513,396	-				+0.1
1,513,401	-				+0.5
1,513,487	+				-1.2
1,513,495	-				+2.3
1,513,513	-				-3.2
1,513,538	+				+0.2
1,513,620	+		CSW01_07105	0.13	-1.7
1,513,626	-		CSW01_07105	0.14	-0.6
1,513,754	+		CSW01_07105	0.20	+1.7
1,513,762	+		CSW01_07105	0.21	+1.5
1,513,769	+		CSW01_07105	0.21	-0.2
1,513,770	-		CSW01_07105	0.21	+1.3
1,513,777	-		CSW01_07105	0.22	-3.7
1,513,796	+		CSW01_07105	0.23	-1.0
1,513,796	+		CSW01_07105	0.23	-0.3
1,513,803	-		CSW01_07105	0.23	+0.6
1,513,804	-		CSW01_07105	0.23	-2.1
1,513,807	+		CSW01_07105	0.23	+0.4
1,513,807	+		CSW01_07105	0.23	+1.7
1,513,807	+		CSW01_07105	0.23	+0.6
1,513,807	+		CSW01_07105	0.23	-1.6
1,513,807	+		CSW01_07105	0.23	-0.7
1,513,807	+		CSW01_07105	0.23	-1.1
1,513,807	+		CSW01_07105	0.23	-0.9
1,513,815	-		CSW01_07105	0.24	+0.4
1,513,815	-		CSW01_07105	0.24	+1.4
1,513,815	-		CSW01_07105	0.24	-2.5
1,513,820	-		CSW01_07105	0.24	-1.5
1,513,849	+		CSW01_07105	0.25	+1.1
1,513,850	-		CSW01_07105	0.25	+0.8
1,513,889	+		CSW01_07105	0.27	+1.7
1,513,895	+		CSW01_07105	0.28	+1.2
1,513,896	+		CSW01_07105	0.28	+2.4
1,513,897	+		CSW01_07105	0.28	-2.8
1,513,897	+		CSW01_07105	0.28	-0.3
1,513,903	+		CSW01_07105	0.28	-0.4
1,513,904	-		CSW01_07105	0.28	+0.4
1,513,904	-		CSW01_07105	0.28	+0.1
1,513,904	-		CSW01_07105	0.28	-0.2
1,513,958	+		CSW01_07105	0.31	-1.7
1,514,062	-		CSW01_07105	0.36	+0.3
1,514,073	+		CSW01_07105	0.37	-1.2
1,514,093	-		CSW01_07105	0.38	+0.1
1,514,099	+		CSW01_07105	0.38	-0.0
1,514,099	+		CSW01_07105	0.38	-0.6
1,514,099	+		CSW01_07105	0.38	+0.7
1,514,099	+		CSW01_07105	0.38	+0.3
1,514,107	-		CSW01_07105	0.39	+0.3
1,514,107	-		CSW01_07105	0.39	-3.3
1,514,107	-		CSW01_07105	0.39	-0.9
1,514,107	-		CSW01_07105	0.39	-0.1
1,514,107	-		CSW01_07105	0.39	+0.9
1,514,107	-		CSW01_07105	0.39	-1.6
1,514,107	-		CSW01_07105	0.39	-2.5
1,514,107	-		CSW01_07105	0.39	-1.7
1,514,111	+		CSW01_07105	0.39	-1.9
1,514,111	+		CSW01_07105	0.39	-1.8
1,514,119	-		CSW01_07105	0.39	-0.1
1,514,129	+		CSW01_07105	0.40	+2.4
1,514,138	-		CSW01_07105	0.40	-1.8
1,514,139	+		CSW01_07105	0.40	+0.7
1,514,174	-		CSW01_07105	0.42	+0.1
1,514,175	-		CSW01_07105	0.42	-0.5
1,514,176	+		CSW01_07105	0.42	-0.3
1,514,183	+		CSW01_07105	0.43	+0.3
1,514,244	+		CSW01_07105	0.46	-1.2
1,514,244	+		CSW01_07105	0.46	-0.0
1,514,276	+		CSW01_07105	0.47	+0.1
1,514,276	+		CSW01_07105	0.47	-0.9
1,514,284	+		CSW01_07105	0.48	+0.8
1,514,310	-		CSW01_07105	0.49	+0.1
1,514,315	+		CSW01_07105	0.49	+1.4
1,514,315	+		CSW01_07105	0.49	-2.3
1,514,320	-		CSW01_07105	0.50	-1.2
1,514,327	+		CSW01_07105	0.50	+0.3
1,514,327	+		CSW01_07105	0.50	+2.6
1,514,327	+		CSW01_07105	0.50	-0.4
1,514,327	+		CSW01_07105	0.50	-0.8
1,514,335	-		CSW01_07105	0.51	+0.1
1,514,335	-		CSW01_07105	0.51	+1.2
1,514,335	-		CSW01_07105	0.51	-0.0
1,514,335	-		CSW01_07105	0.51	+1.0
1,514,337	+		CSW01_07105	0.51	-1.2
1,514,347	+		CSW01_07105	0.51	+0.4
1,514,347	+		CSW01_07105	0.51	-0.0
1,514,347	+		CSW01_07105	0.51	+1.3
1,514,355	-		CSW01_07105	0.52	+0.0
1,514,365	+		CSW01_07105	0.52	-0.1
1,514,365	-		CSW01_07105	0.52	-1.7
1,514,368	+		CSW01_07105	0.52	+1.0
1,514,427	+		CSW01_07105	0.55	+0.7
1,514,435	-		CSW01_07105	0.56	-0.9
1,514,435	-		CSW01_07105	0.56	+0.0
1,514,436	-		CSW01_07105	0.56	+0.4
1,514,472	+		CSW01_07105	0.58	-0.5
1,514,473	+		CSW01_07105	0.58	+0.1
1,514,480	-		CSW01_07105	0.58	+0.2
1,514,481	-		CSW01_07105	0.58	+0.5
1,514,481	-		CSW01_07105	0.58	-1.4
1,514,481	-		CSW01_07105	0.58	+1.0
1,514,495	+		CSW01_07105	0.59	+0.3
1,514,495	+		CSW01_07105	0.59	-1.7
1,514,542	-		CSW01_07105	0.61	-1.8
1,514,581	+		CSW01_07105	0.63	-0.7
1,514,581	+		CSW01_07105	0.63	-1.4
1,514,594	-		CSW01_07105	0.64	+0.6
1,514,648	+		CSW01_07105	0.67	+1.3
1,514,648	+		CSW01_07105	0.67	+1.5
1,514,648	+		CSW01_07105	0.67	+0.5
1,514,648	+		CSW01_07105	0.67	-1.4
1,514,650	+		CSW01_07105	0.67	-0.9
1,514,656	+		CSW01_07105	0.67	-1.1
1,514,656	-		CSW01_07105	0.67	-0.1
1,514,671	-		CSW01_07105	0.68	-0.3
1,514,671	-		CSW01_07105	0.68	-2.1
1,514,671	-		CSW01_07105	0.68	+1.1
1,514,676	-		CSW01_07105	0.68	+0.9
1,514,676	-		CSW01_07105	0.68	-1.2
1,514,686	-		CSW01_07105	0.69	-3.6
1,514,786	-		CSW01_07105	0.74	+2.0
1,514,789	+		CSW01_07105	0.74	-2.1
1,514,817	+		CSW01_07105	0.76	-0.6
1,514,817	+		CSW01_07105	0.76	+0.8
1,514,819	-		CSW01_07105	0.76	+0.2
1,514,850	+		CSW01_07105	0.77	-0.4
1,514,850	+		CSW01_07105	0.77	-1.3
1,514,850	+		CSW01_07105	0.77	-0.3
1,514,850	+		CSW01_07105	0.77	-0.7
1,514,850	+		CSW01_07105	0.77	+1.0
1,514,850	+		CSW01_07105	0.77	-0.7
1,514,850	+		CSW01_07105	0.77	-0.2
1,514,850	+		CSW01_07105	0.77	+0.8
1,514,854	-		CSW01_07105	0.77	-1.2
1,514,858	-		CSW01_07105	0.78	-1.6
1,514,858	-		CSW01_07105	0.78	-2.9
1,514,875	+		CSW01_07105	0.79	-0.0
1,514,894	+		CSW01_07105	0.80	+1.1
1,514,894	+		CSW01_07105	0.80	+0.9
1,514,902	+		CSW01_07105	0.80	-0.1
1,514,914	+		CSW01_07105	0.81	-0.1
1,514,915	+		CSW01_07105	0.81	+0.3
1,514,925	-		CSW01_07105	0.81	+1.1
1,514,932	+		CSW01_07105	0.82	+0.6
1,514,932	+		CSW01_07105	0.82	-0.0
1,514,932	+		CSW01_07105	0.82	-0.1
1,514,937	+		CSW01_07105	0.82	-0.3
1,514,937	+		CSW01_07105	0.82	+1.3
1,514,937	+		CSW01_07105	0.82	-0.3
1,514,940	-		CSW01_07105	0.82	-1.5
1,514,940	-		CSW01_07105	0.82	+1.5
1,514,940	-		CSW01_07105	0.82	-1.5
1,514,940	-		CSW01_07105	0.82	-3.4
1,514,942	+		CSW01_07105	0.82	-2.0
1,514,945	-		CSW01_07105	0.82	+0.4
1,514,950	-		CSW01_07105	0.82	-0.2
1,514,950	-		CSW01_07105	0.82	-2.5
1,514,951	-		CSW01_07105	0.83	+0.1
1,514,951	-		CSW01_07105	0.83	-1.4
1,514,963	+		CSW01_07105	0.83	-1.1
1,514,966	+		CSW01_07105	0.83	-0.1
1,514,966	+		CSW01_07105	0.83	-0.4
1,514,966	+		CSW01_07105	0.83	-0.4
1,514,966	+		CSW01_07105	0.83	+1.5
1,514,973	+		CSW01_07105	0.84	+0.1
1,514,973	+		CSW01_07105	0.84	+0.8
1,514,973	+		CSW01_07105	0.84	-3.1
1,514,973	+		CSW01_07105	0.84	+1.9
1,514,973	+		CSW01_07105	0.84	+1.3
1,514,981	-		CSW01_07105	0.84	-2.5
1,515,066	+		CSW01_07105	0.88	-3.1
1,515,123	+				-0.5
1,515,186	+				+1.2
1,515,193	+				-1.2
1,515,201	-				+0.1
1,515,203	+				+2.2
1,515,213	-				-2.2
1,515,215	+				+0.6
1,515,215	+				-0.6
1,515,215	+				-0.1
1,515,215	+				-2.6
1,515,215	+				-0.1
1,515,215	+				-0.1
1,515,215	+				-0.6
1,515,215	+				-1.1
1,515,215	+				-1.5
1,515,215	+				-2.0
1,515,215	+				-1.6
1,515,215	+				-0.1
1,515,215	+				+0.5
1,515,215	+				+1.3
1,515,215	+				+0.9
1,515,223	-				-1.1
1,515,223	-				-1.6
1,515,223	-				-1.2
1,515,252	+				-0.2
1,515,261	+				-0.8
1,515,977	+				-1.7
1,515,980	+				+0.3
1,515,980	+				+0.2
1,515,985	+				+0.2
1,515,987	-				-2.3
1,515,988	-				-0.3
1,515,988	-				-3.2
1,515,992	+				-2.9
1,515,992	+				-0.8
1,515,992	+				-0.8
1,515,992	+				+1.5
1,515,992	+				+1.1
1,515,992	+				-0.6
1,515,992	+				+1.2
1,515,992	+				-1.2
1,515,992	+				+0.7
1,515,992	+				-0.6
1,515,992	+				-0.9
1,515,992	+				-0.3
1,515,993	-				+0.9
1,516,000	-				+0.5
1,516,000	-				+0.4
1,516,000	-				+0.9
1,516,000	-				+0.8
1,516,000	-				-2.5
1,516,000	-				-0.6
1,516,000	-				-1.0
1,516,000	-				-0.3
1,516,000	-				-1.5
1,516,000	-				-1.2
1,516,000	-				+1.1
1,516,000	-				-2.5
1,516,000	-				+0.7
1,516,000	-				+1.6
1,516,000	-				-2.7
1,516,000	-				-1.0
1,516,000	-				+0.3
1,516,000	-				-1.5
1,516,000	-				-0.6
1,516,000	-				+2.0
1,516,000	-				-4.0
1,516,000	-				+0.7
1,516,202	+				-2.8
1,516,210	-				-0.6
1,516,221	-				+0.5
1,516,238	-				-0.1
1,516,249	+		CSW01_07115	0.10	+0.9
1,516,249	+		CSW01_07115	0.10	-1.7
1,516,249	+		CSW01_07115	0.10	-0.1
1,516,249	+		CSW01_07115	0.10	-0.7
1,516,249	+		CSW01_07115	0.10	+0.9
1,516,249	+		CSW01_07115	0.10	-1.9
1,516,249	+		CSW01_07115	0.10	-0.6
1,516,249	+		CSW01_07115	0.10	+1.4
1,516,249	+		CSW01_07115	0.10	-0.9
1,516,249	+		CSW01_07115	0.10	+0.4
1,516,249	+		CSW01_07115	0.10	-0.4
1,516,249	+		CSW01_07115	0.10	-1.2
1,516,249	+		CSW01_07115	0.10	-0.2
1,516,249	+		CSW01_07115	0.10	-0.1
1,516,249	+		CSW01_07115	0.10	-0.1
1,516,249	+		CSW01_07115	0.10	+0.9
1,516,249	+		CSW01_07115	0.10	-1.1
1,516,255	+		CSW01_07115	0.11	-0.7
1,516,257	-		CSW01_07115	0.12	+0.3
1,516,257	-		CSW01_07115	0.12	+1.3
1,516,257	-		CSW01_07115	0.12	-1.4
1,516,257	-		CSW01_07115	0.12	+0.8
1,516,257	-		CSW01_07115	0.12	+0.5
1,516,257	-		CSW01_07115	0.12	-0.2
1,516,257	-		CSW01_07115	0.12	+0.6
1,516,257	-		CSW01_07115	0.12	+0.7
1,516,257	-		CSW01_07115	0.12	-0.5
1,516,257	-		CSW01_07115	0.12	-2.9
1,516,257	-		CSW01_07115	0.12	-0.9
1,516,257	-		CSW01_07115	0.12	-0.6
1,516,257	-		CSW01_07115	0.12	+0.7