Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_05595

Experiment: ICP1_phage_235.3_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_05585 and CSW01_05590 are separated by 122 nucleotidesCSW01_05590 and CSW01_05595 are separated by 437 nucleotidesCSW01_05595 and CSW01_05600 are separated by 75 nucleotides CSW01_05585: CSW01_05585 - DUF412 domain-containing protein, at 1,168,038 to 1,168,490 _05585 CSW01_05590: CSW01_05590 - DNA-binding protein VF530, at 1,168,613 to 1,169,023 _05590 CSW01_05595: CSW01_05595 - ABC transporter substrate-binding protein, at 1,169,461 to 1,170,426 _05595 CSW01_05600: CSW01_05600 - ABC transporter permease, at 1,170,502 to 1,171,485 _05600 Position (kb) 1169 1170 1171Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1168.468 kb on - strandat 1168.484 kb on + strandat 1168.519 kb on + strandat 1168.523 kb on - strandat 1168.583 kb on + strandat 1168.619 kb on - strandat 1168.654 kb on + strand, within CSW01_05590at 1168.720 kb on + strand, within CSW01_05590at 1168.721 kb on - strand, within CSW01_05590at 1168.872 kb on + strand, within CSW01_05590at 1168.921 kb on - strand, within CSW01_05590at 1169.091 kb on + strandat 1169.091 kb on + strandat 1169.144 kb on - strandat 1169.202 kb on + strandat 1169.455 kb on + strandat 1169.461 kb on - strandat 1169.496 kb on + strandat 1169.506 kb on + strandat 1169.511 kb on + strandat 1169.540 kb on - strandat 1169.587 kb on - strand, within CSW01_05595at 1169.593 kb on + strand, within CSW01_05595at 1169.593 kb on + strand, within CSW01_05595at 1169.593 kb on + strand, within CSW01_05595at 1169.593 kb on + strand, within CSW01_05595at 1169.593 kb on + strand, within CSW01_05595at 1169.593 kb on + strand, within CSW01_05595at 1169.601 kb on - strand, within CSW01_05595at 1169.601 kb on - strand, within CSW01_05595at 1169.601 kb on - strand, within CSW01_05595at 1169.601 kb on - strand, within CSW01_05595at 1169.601 kb on - strand, within CSW01_05595at 1169.601 kb on - strand, within CSW01_05595at 1169.601 kb on - strand, within CSW01_05595at 1169.601 kb on - strand, within CSW01_05595at 1169.626 kb on + strand, within CSW01_05595at 1169.627 kb on + strand, within CSW01_05595at 1169.627 kb on + strand, within CSW01_05595at 1169.627 kb on + strand, within CSW01_05595at 1169.627 kb on + strand, within CSW01_05595at 1169.635 kb on - strand, within CSW01_05595at 1169.635 kb on - strand, within CSW01_05595at 1169.635 kb on - strand, within CSW01_05595at 1169.635 kb on - strand, within CSW01_05595at 1169.681 kb on - strand, within CSW01_05595at 1169.715 kb on - strand, within CSW01_05595at 1169.772 kb on - strand, within CSW01_05595at 1169.772 kb on - strand, within CSW01_05595at 1169.797 kb on + strand, within CSW01_05595at 1169.799 kb on + strand, within CSW01_05595at 1169.903 kb on + strand, within CSW01_05595at 1169.908 kb on + strand, within CSW01_05595at 1169.913 kb on + strand, within CSW01_05595at 1169.953 kb on + strand, within CSW01_05595at 1169.953 kb on + strand, within CSW01_05595at 1169.953 kb on + strand, within CSW01_05595at 1169.953 kb on + strand, within CSW01_05595at 1169.953 kb on + strand, within CSW01_05595at 1169.953 kb on + strand, within CSW01_05595at 1169.955 kb on + strand, within CSW01_05595at 1169.955 kb on + strand, within CSW01_05595at 1169.960 kb on + strand, within CSW01_05595at 1169.961 kb on - strand, within CSW01_05595at 1169.961 kb on - strand, within CSW01_05595at 1169.961 kb on - strand, within CSW01_05595at 1169.961 kb on - strand, within CSW01_05595at 1169.961 kb on - strand, within CSW01_05595at 1169.961 kb on - strand, within CSW01_05595at 1169.961 kb on - strand, within CSW01_05595at 1169.963 kb on - strand, within CSW01_05595at 1169.965 kb on + strand, within CSW01_05595at 1169.968 kb on - strand, within CSW01_05595at 1169.984 kb on + strand, within CSW01_05595at 1169.984 kb on + strand, within CSW01_05595at 1170.023 kb on + strand, within CSW01_05595at 1170.023 kb on + strand, within CSW01_05595at 1170.023 kb on + strand, within CSW01_05595at 1170.023 kb on + strand, within CSW01_05595at 1170.031 kb on - strand, within CSW01_05595at 1170.031 kb on - strand, within CSW01_05595at 1170.031 kb on - strand, within CSW01_05595at 1170.031 kb on - strand, within CSW01_05595at 1170.031 kb on - strand, within CSW01_05595at 1170.031 kb on - strand, within CSW01_05595at 1170.031 kb on - strand, within CSW01_05595at 1170.031 kb on - strand, within CSW01_05595at 1170.046 kb on + strand, within CSW01_05595at 1170.064 kb on - strand, within CSW01_05595at 1170.201 kb on + strand, within CSW01_05595at 1170.431 kb on + strandat 1170.459 kb on - strandat 1170.474 kb on - strandat 1170.494 kb on - strandat 1170.507 kb on - strandat 1170.532 kb on + strandat 1170.532 kb on + strandat 1170.574 kb on - strandat 1170.574 kb on - strandat 1170.574 kb on - strandat 1170.583 kb on + strandat 1170.598 kb on - strandat 1170.609 kb on + strand, within CSW01_05600at 1170.630 kb on + strand, within CSW01_05600at 1170.920 kb on - strand, within CSW01_05600at 1170.926 kb on - strand, within CSW01_05600at 1170.928 kb on + strand, within CSW01_05600at 1170.928 kb on + strand, within CSW01_05600at 1171.040 kb on + strand, within CSW01_05600at 1171.042 kb on + strand, within CSW01_05600at 1171.109 kb on - strand, within CSW01_05600at 1171.109 kb on - strand, within CSW01_05600at 1171.128 kb on + strand, within CSW01_05600at 1171.136 kb on - strand, within CSW01_05600at 1171.136 kb on - strand, within CSW01_05600at 1171.279 kb on - strand, within CSW01_05600at 1171.279 kb on - strand, within CSW01_05600at 1171.279 kb on - strand, within CSW01_05600at 1171.284 kb on - strand, within CSW01_05600at 1171.284 kb on - strand, within CSW01_05600at 1171.284 kb on - strand, within CSW01_05600at 1171.310 kb on + strand, within CSW01_05600at 1171.318 kb on - strand, within CSW01_05600at 1171.318 kb on - strand, within CSW01_05600at 1171.318 kb on - strand, within CSW01_05600at 1171.380 kb on + strand, within CSW01_05600

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep2
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1,168,468 - -1.1
1,168,484 + +1.1
1,168,519 + -0.3
1,168,523 - +2.0
1,168,583 + +1.1
1,168,619 - +0.8
1,168,654 + CSW01_05590 0.10 +0.6
1,168,720 + CSW01_05590 0.26 +0.5
1,168,721 - CSW01_05590 0.26 -0.0
1,168,872 + CSW01_05590 0.63 +0.1
1,168,921 - CSW01_05590 0.75 +0.3
1,169,091 + -2.7
1,169,091 + -1.3
1,169,144 - -0.8
1,169,202 + +0.4
1,169,455 + -0.4
1,169,461 - +1.7
1,169,496 + +0.2
1,169,506 + +1.9
1,169,511 + -0.9
1,169,540 - -1.6
1,169,587 - CSW01_05595 0.13 -2.3
1,169,593 + CSW01_05595 0.14 -3.0
1,169,593 + CSW01_05595 0.14 -1.4
1,169,593 + CSW01_05595 0.14 +1.4
1,169,593 + CSW01_05595 0.14 -0.7
1,169,593 + CSW01_05595 0.14 -3.3
1,169,593 + CSW01_05595 0.14 -1.3
1,169,601 - CSW01_05595 0.14 +0.3
1,169,601 - CSW01_05595 0.14 -1.0
1,169,601 - CSW01_05595 0.14 +1.6
1,169,601 - CSW01_05595 0.14 -1.0
1,169,601 - CSW01_05595 0.14 +1.2
1,169,601 - CSW01_05595 0.14 -0.5
1,169,601 - CSW01_05595 0.14 +0.9
1,169,601 - CSW01_05595 0.14 +0.2
1,169,626 + CSW01_05595 0.17 -4.2
1,169,627 + CSW01_05595 0.17 +0.2
1,169,627 + CSW01_05595 0.17 +0.3
1,169,627 + CSW01_05595 0.17 +0.1
1,169,627 + CSW01_05595 0.17 +0.1
1,169,635 - CSW01_05595 0.18 +0.5
1,169,635 - CSW01_05595 0.18 +1.9
1,169,635 - CSW01_05595 0.18 -2.9
1,169,635 - CSW01_05595 0.18 +1.7
1,169,681 - CSW01_05595 0.23 -2.4
1,169,715 - CSW01_05595 0.26 +0.2
1,169,772 - CSW01_05595 0.32 +0.6
1,169,772 - CSW01_05595 0.32 -0.8
1,169,797 + CSW01_05595 0.35 -0.6
1,169,799 + CSW01_05595 0.35 +1.0
1,169,903 + CSW01_05595 0.46 +0.6
1,169,908 + CSW01_05595 0.46 -1.4
1,169,913 + CSW01_05595 0.47 -0.1
1,169,953 + CSW01_05595 0.51 +0.4
1,169,953 + CSW01_05595 0.51 -2.6
1,169,953 + CSW01_05595 0.51 +2.1
1,169,953 + CSW01_05595 0.51 +1.2
1,169,953 + CSW01_05595 0.51 -0.3
1,169,953 + CSW01_05595 0.51 -0.2
1,169,955 + CSW01_05595 0.51 -2.0
1,169,955 + CSW01_05595 0.51 +1.5
1,169,960 + CSW01_05595 0.52 +1.6
1,169,961 - CSW01_05595 0.52 +0.0
1,169,961 - CSW01_05595 0.52 +2.0
1,169,961 - CSW01_05595 0.52 +0.6
1,169,961 - CSW01_05595 0.52 +1.9
1,169,961 - CSW01_05595 0.52 +0.3
1,169,961 - CSW01_05595 0.52 -0.2
1,169,961 - CSW01_05595 0.52 +0.5
1,169,963 - CSW01_05595 0.52 +0.4
1,169,965 + CSW01_05595 0.52 -0.5
1,169,968 - CSW01_05595 0.52 -2.2
1,169,984 + CSW01_05595 0.54 +0.8
1,169,984 + CSW01_05595 0.54 -0.2
1,170,023 + CSW01_05595 0.58 -1.1
1,170,023 + CSW01_05595 0.58 -2.0
1,170,023 + CSW01_05595 0.58 -1.1
1,170,023 + CSW01_05595 0.58 -2.4
1,170,031 - CSW01_05595 0.59 +0.5
1,170,031 - CSW01_05595 0.59 -1.1
1,170,031 - CSW01_05595 0.59 -0.1
1,170,031 - CSW01_05595 0.59 -0.7
1,170,031 - CSW01_05595 0.59 +1.4
1,170,031 - CSW01_05595 0.59 -1.3
1,170,031 - CSW01_05595 0.59 +1.2
1,170,031 - CSW01_05595 0.59 +0.9
1,170,046 + CSW01_05595 0.61 -1.9
1,170,064 - CSW01_05595 0.62 +0.5
1,170,201 + CSW01_05595 0.77 +0.8
1,170,431 + +0.6
1,170,459 - -0.5
1,170,474 - -0.5
1,170,494 - -0.7
1,170,507 - -0.9
1,170,532 + -3.0
1,170,532 + +0.9
1,170,574 - +1.0
1,170,574 - -3.6
1,170,574 - +1.1
1,170,583 + -1.8
1,170,598 - +1.7
1,170,609 + CSW01_05600 0.11 +1.0
1,170,630 + CSW01_05600 0.13 +1.2
1,170,920 - CSW01_05600 0.42 -0.1
1,170,926 - CSW01_05600 0.43 +0.5
1,170,928 + CSW01_05600 0.43 +0.4
1,170,928 + CSW01_05600 0.43 +0.8
1,171,040 + CSW01_05600 0.55 -1.4
1,171,042 + CSW01_05600 0.55 -2.5
1,171,109 - CSW01_05600 0.62 -0.9
1,171,109 - CSW01_05600 0.62 +0.6
1,171,128 + CSW01_05600 0.64 +0.6
1,171,136 - CSW01_05600 0.64 +0.6
1,171,136 - CSW01_05600 0.64 +0.5
1,171,279 - CSW01_05600 0.79 -0.3
1,171,279 - CSW01_05600 0.79 -2.3
1,171,279 - CSW01_05600 0.79 -3.1
1,171,284 - CSW01_05600 0.79 -0.4
1,171,284 - CSW01_05600 0.79 -2.3
1,171,284 - CSW01_05600 0.79 -0.1
1,171,310 + CSW01_05600 0.82 -1.4
1,171,318 - CSW01_05600 0.83 -1.4
1,171,318 - CSW01_05600 0.83 +0.4
1,171,318 - CSW01_05600 0.83 +0.7
1,171,380 + CSW01_05600 0.89 -0.5

Or see this region's nucleotide sequence