Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04440

Experiment: ICP1_phage_235.3_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04435 and CSW01_04440 overlap by 11 nucleotidesCSW01_04440 and CSW01_04445 are separated by 36 nucleotidesCSW01_04445 and CSW01_04450 overlap by 8 nucleotides CSW01_04435: CSW01_04435 - hypothetical protein, at 924,079 to 925,320 _04435 CSW01_04440: CSW01_04440 - type IV pilin, at 925,310 to 925,723 _04440 CSW01_04445: CSW01_04445 - hypothetical protein, at 925,760 to 926,128 _04445 CSW01_04450: CSW01_04450 - aminobenzoyl-glutamate transporter, at 926,121 to 927,680 _04450 Position (kb) 925 926Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 924.310 kb on + strand, within CSW01_04435at 924.318 kb on - strand, within CSW01_04435at 924.318 kb on - strand, within CSW01_04435at 924.320 kb on - strand, within CSW01_04435at 924.325 kb on - strand, within CSW01_04435at 924.329 kb on + strand, within CSW01_04435at 924.331 kb on - strand, within CSW01_04435at 924.361 kb on + strand, within CSW01_04435at 924.362 kb on + strand, within CSW01_04435at 924.363 kb on + strand, within CSW01_04435at 924.363 kb on + strand, within CSW01_04435at 924.364 kb on - strand, within CSW01_04435at 924.374 kb on + strand, within CSW01_04435at 924.393 kb on - strand, within CSW01_04435at 924.566 kb on + strand, within CSW01_04435at 924.569 kb on - strand, within CSW01_04435at 924.579 kb on - strand, within CSW01_04435at 924.614 kb on - strand, within CSW01_04435at 924.619 kb on - strand, within CSW01_04435at 924.619 kb on - strand, within CSW01_04435at 924.619 kb on - strand, within CSW01_04435at 924.633 kb on + strand, within CSW01_04435at 924.633 kb on + strand, within CSW01_04435at 924.634 kb on + strand, within CSW01_04435at 924.641 kb on - strand, within CSW01_04435at 924.642 kb on - strand, within CSW01_04435at 924.642 kb on - strand, within CSW01_04435at 924.653 kb on + strand, within CSW01_04435at 924.661 kb on - strand, within CSW01_04435at 924.661 kb on - strand, within CSW01_04435at 924.663 kb on - strand, within CSW01_04435at 924.677 kb on - strand, within CSW01_04435at 924.677 kb on - strand, within CSW01_04435at 924.681 kb on + strand, within CSW01_04435at 924.730 kb on - strand, within CSW01_04435at 924.734 kb on + strand, within CSW01_04435at 924.734 kb on + strand, within CSW01_04435at 924.734 kb on + strand, within CSW01_04435at 924.734 kb on + strand, within CSW01_04435at 924.734 kb on + strand, within CSW01_04435at 924.742 kb on - strand, within CSW01_04435at 924.742 kb on - strand, within CSW01_04435at 924.742 kb on - strand, within CSW01_04435at 924.745 kb on + strand, within CSW01_04435at 924.746 kb on + strand, within CSW01_04435at 924.746 kb on + strand, within CSW01_04435at 924.746 kb on + strand, within CSW01_04435at 924.754 kb on - strand, within CSW01_04435at 924.822 kb on + strand, within CSW01_04435at 924.822 kb on + strand, within CSW01_04435at 924.822 kb on + strand, within CSW01_04435at 924.822 kb on + strand, within CSW01_04435at 924.830 kb on - strand, within CSW01_04435at 924.830 kb on - strand, within CSW01_04435at 924.830 kb on - strand, within CSW01_04435at 924.877 kb on + strand, within CSW01_04435at 924.903 kb on - strand, within CSW01_04435at 924.910 kb on - strand, within CSW01_04435at 925.014 kb on + strand, within CSW01_04435at 925.014 kb on + strand, within CSW01_04435at 925.014 kb on + strand, within CSW01_04435at 925.014 kb on + strand, within CSW01_04435at 925.014 kb on + strand, within CSW01_04435at 925.014 kb on + strand, within CSW01_04435at 925.014 kb on + strand, within CSW01_04435at 925.022 kb on - strand, within CSW01_04435at 925.022 kb on - strand, within CSW01_04435at 925.022 kb on - strand, within CSW01_04435at 925.044 kb on + strand, within CSW01_04435at 925.049 kb on + strand, within CSW01_04435at 925.057 kb on - strand, within CSW01_04435at 925.060 kb on + strand, within CSW01_04435at 925.060 kb on + strand, within CSW01_04435at 925.060 kb on + strand, within CSW01_04435at 925.068 kb on - strand, within CSW01_04435at 925.068 kb on - strand, within CSW01_04435at 925.068 kb on - strand, within CSW01_04435at 925.073 kb on - strand, within CSW01_04435at 925.076 kb on + strand, within CSW01_04435at 925.106 kb on + strand, within CSW01_04435at 925.128 kb on + strand, within CSW01_04435at 925.128 kb on + strand, within CSW01_04435at 925.128 kb on + strand, within CSW01_04435at 925.175 kb on + strand, within CSW01_04435at 925.183 kb on - strand, within CSW01_04435at 925.183 kb on - strand, within CSW01_04435at 925.183 kb on - strand, within CSW01_04435at 925.185 kb on + strand, within CSW01_04435at 925.194 kb on - strand, within CSW01_04435at 925.194 kb on - strand, within CSW01_04435at 925.194 kb on - strand, within CSW01_04435at 925.194 kb on - strand, within CSW01_04435at 925.194 kb on - strand, within CSW01_04435at 925.194 kb on - strand, within CSW01_04435at 925.194 kb on - strand, within CSW01_04435at 925.196 kb on + strandat 925.196 kb on + strandat 925.196 kb on + strandat 925.201 kb on + strandat 925.204 kb on - strandat 925.204 kb on - strandat 925.204 kb on - strandat 925.209 kb on - strandat 925.209 kb on - strandat 925.209 kb on - strandat 925.209 kb on - strandat 925.209 kb on - strandat 925.304 kb on + strandat 925.336 kb on - strandat 925.336 kb on - strandat 925.356 kb on + strand, within CSW01_04440at 925.361 kb on + strand, within CSW01_04440at 925.364 kb on - strand, within CSW01_04440at 925.364 kb on - strand, within CSW01_04440at 925.366 kb on + strand, within CSW01_04440at 925.371 kb on + strand, within CSW01_04440at 925.374 kb on - strand, within CSW01_04440at 925.379 kb on - strand, within CSW01_04440at 925.379 kb on - strand, within CSW01_04440at 925.440 kb on + strand, within CSW01_04440at 925.440 kb on + strand, within CSW01_04440at 925.440 kb on + strand, within CSW01_04440at 925.440 kb on + strand, within CSW01_04440at 925.440 kb on + strand, within CSW01_04440at 925.448 kb on + strand, within CSW01_04440at 925.448 kb on - strand, within CSW01_04440at 925.456 kb on - strand, within CSW01_04440at 925.488 kb on - strand, within CSW01_04440at 925.506 kb on - strand, within CSW01_04440at 925.572 kb on - strand, within CSW01_04440at 925.585 kb on + strand, within CSW01_04440at 925.585 kb on + strand, within CSW01_04440at 925.585 kb on + strand, within CSW01_04440at 925.585 kb on + strand, within CSW01_04440at 925.585 kb on + strand, within CSW01_04440at 925.590 kb on + strand, within CSW01_04440at 925.593 kb on - strand, within CSW01_04440at 925.593 kb on - strand, within CSW01_04440at 925.598 kb on - strand, within CSW01_04440at 925.599 kb on - strand, within CSW01_04440at 925.622 kb on + strand, within CSW01_04440at 925.628 kb on + strand, within CSW01_04440at 925.673 kb on - strand, within CSW01_04440at 925.698 kb on + strandat 925.706 kb on - strandat 925.706 kb on - strandat 925.712 kb on + strandat 925.779 kb on + strandat 925.826 kb on + strand, within CSW01_04445at 925.844 kb on - strand, within CSW01_04445at 925.964 kb on + strand, within CSW01_04445at 926.080 kb on + strand, within CSW01_04445at 926.086 kb on + strand, within CSW01_04445at 926.094 kb on - strandat 926.276 kb on - strandat 926.434 kb on + strand, within CSW01_04450at 926.437 kb on - strand, within CSW01_04450at 926.442 kb on - strand, within CSW01_04450at 926.442 kb on - strand, within CSW01_04450at 926.442 kb on - strand, within CSW01_04450at 926.452 kb on + strand, within CSW01_04450at 926.452 kb on + strand, within CSW01_04450at 926.467 kb on + strand, within CSW01_04450at 926.475 kb on - strand, within CSW01_04450at 926.475 kb on - strand, within CSW01_04450at 926.486 kb on + strand, within CSW01_04450at 926.533 kb on - strand, within CSW01_04450at 926.549 kb on + strand, within CSW01_04450at 926.559 kb on - strand, within CSW01_04450at 926.616 kb on - strand, within CSW01_04450

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep2
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924,310 + CSW01_04435 0.19 -0.0
924,318 - CSW01_04435 0.19 -2.5
924,318 - CSW01_04435 0.19 +0.0
924,320 - CSW01_04435 0.19 -1.4
924,325 - CSW01_04435 0.20 -0.5
924,329 + CSW01_04435 0.20 -0.2
924,331 - CSW01_04435 0.20 +1.1
924,361 + CSW01_04435 0.23 -3.1
924,362 + CSW01_04435 0.23 +0.5
924,363 + CSW01_04435 0.23 +2.1
924,363 + CSW01_04435 0.23 +0.0
924,364 - CSW01_04435 0.23 -3.0
924,374 + CSW01_04435 0.24 -0.4
924,393 - CSW01_04435 0.25 -2.7
924,566 + CSW01_04435 0.39 +1.4
924,569 - CSW01_04435 0.39 +0.4
924,579 - CSW01_04435 0.40 -0.6
924,614 - CSW01_04435 0.43 +0.4
924,619 - CSW01_04435 0.43 -2.8
924,619 - CSW01_04435 0.43 -0.1
924,619 - CSW01_04435 0.43 -0.4
924,633 + CSW01_04435 0.45 +2.4
924,633 + CSW01_04435 0.45 +1.1
924,634 + CSW01_04435 0.45 +0.3
924,641 - CSW01_04435 0.45 +1.3
924,642 - CSW01_04435 0.45 +0.9
924,642 - CSW01_04435 0.45 -3.3
924,653 + CSW01_04435 0.46 -2.6
924,661 - CSW01_04435 0.47 -0.4
924,661 - CSW01_04435 0.47 -0.8
924,663 - CSW01_04435 0.47 +0.8
924,677 - CSW01_04435 0.48 +0.6
924,677 - CSW01_04435 0.48 -0.5
924,681 + CSW01_04435 0.48 +1.8
924,730 - CSW01_04435 0.52 +0.2
924,734 + CSW01_04435 0.53 +1.1
924,734 + CSW01_04435 0.53 +1.1
924,734 + CSW01_04435 0.53 -2.0
924,734 + CSW01_04435 0.53 +1.2
924,734 + CSW01_04435 0.53 -3.4
924,742 - CSW01_04435 0.53 +0.7
924,742 - CSW01_04435 0.53 +0.0
924,742 - CSW01_04435 0.53 +0.2
924,745 + CSW01_04435 0.54 -2.7
924,746 + CSW01_04435 0.54 +0.2
924,746 + CSW01_04435 0.54 -0.9
924,746 + CSW01_04435 0.54 +0.5
924,754 - CSW01_04435 0.54 -1.7
924,822 + CSW01_04435 0.60 +0.0
924,822 + CSW01_04435 0.60 +1.4
924,822 + CSW01_04435 0.60 +2.3
924,822 + CSW01_04435 0.60 -0.8
924,830 - CSW01_04435 0.60 -2.7
924,830 - CSW01_04435 0.60 +1.1
924,830 - CSW01_04435 0.60 -0.3
924,877 + CSW01_04435 0.64 -2.5
924,903 - CSW01_04435 0.66 +0.0
924,910 - CSW01_04435 0.67 +1.1
925,014 + CSW01_04435 0.75 +0.5
925,014 + CSW01_04435 0.75 -3.0
925,014 + CSW01_04435 0.75 +1.0
925,014 + CSW01_04435 0.75 -0.3
925,014 + CSW01_04435 0.75 -1.7
925,014 + CSW01_04435 0.75 -0.2
925,014 + CSW01_04435 0.75 +0.3
925,022 - CSW01_04435 0.76 -2.7
925,022 - CSW01_04435 0.76 +1.4
925,022 - CSW01_04435 0.76 +0.3
925,044 + CSW01_04435 0.78 -0.9
925,049 + CSW01_04435 0.78 +0.2
925,057 - CSW01_04435 0.79 -0.4
925,060 + CSW01_04435 0.79 +0.0
925,060 + CSW01_04435 0.79 -1.2
925,060 + CSW01_04435 0.79 +0.7
925,068 - CSW01_04435 0.80 +0.0
925,068 - CSW01_04435 0.80 -1.0
925,068 - CSW01_04435 0.80 +1.0
925,073 - CSW01_04435 0.80 -2.5
925,076 + CSW01_04435 0.80 +1.0
925,106 + CSW01_04435 0.83 +1.8
925,128 + CSW01_04435 0.84 -0.4
925,128 + CSW01_04435 0.84 +0.1
925,128 + CSW01_04435 0.84 +0.3
925,175 + CSW01_04435 0.88 -0.3
925,183 - CSW01_04435 0.89 +1.0
925,183 - CSW01_04435 0.89 -1.2
925,183 - CSW01_04435 0.89 -0.7
925,185 + CSW01_04435 0.89 -0.2
925,194 - CSW01_04435 0.90 -1.7
925,194 - CSW01_04435 0.90 -1.2
925,194 - CSW01_04435 0.90 +1.0
925,194 - CSW01_04435 0.90 -0.5
925,194 - CSW01_04435 0.90 -0.4
925,194 - CSW01_04435 0.90 -0.5
925,194 - CSW01_04435 0.90 +0.7
925,196 + +0.5
925,196 + -4.3
925,196 + +0.7
925,201 + +0.3
925,204 - -1.2
925,204 - -0.6
925,204 - +0.6
925,209 - +0.7
925,209 - +0.0
925,209 - +0.7
925,209 - +0.9
925,209 - +0.1
925,304 + -0.3
925,336 - +0.8
925,336 - -0.5
925,356 + CSW01_04440 0.11 -0.1
925,361 + CSW01_04440 0.12 -1.0
925,364 - CSW01_04440 0.13 -2.1
925,364 - CSW01_04440 0.13 +0.2
925,366 + CSW01_04440 0.14 -3.3
925,371 + CSW01_04440 0.15 +0.5
925,374 - CSW01_04440 0.15 -2.3
925,379 - CSW01_04440 0.17 +0.3
925,379 - CSW01_04440 0.17 +0.0
925,440 + CSW01_04440 0.31 -0.2
925,440 + CSW01_04440 0.31 +0.1
925,440 + CSW01_04440 0.31 -3.5
925,440 + CSW01_04440 0.31 +1.9
925,440 + CSW01_04440 0.31 +1.2
925,448 + CSW01_04440 0.33 -0.2
925,448 - CSW01_04440 0.33 -0.3
925,456 - CSW01_04440 0.35 -0.6
925,488 - CSW01_04440 0.43 -1.8
925,506 - CSW01_04440 0.47 +0.3
925,572 - CSW01_04440 0.63 -2.6
925,585 + CSW01_04440 0.66 -1.1
925,585 + CSW01_04440 0.66 -0.8
925,585 + CSW01_04440 0.66 +0.9
925,585 + CSW01_04440 0.66 -2.5
925,585 + CSW01_04440 0.66 -1.1
925,590 + CSW01_04440 0.68 -3.2
925,593 - CSW01_04440 0.68 -0.4
925,593 - CSW01_04440 0.68 -1.2
925,598 - CSW01_04440 0.70 -0.4
925,599 - CSW01_04440 0.70 +0.1
925,622 + CSW01_04440 0.75 -0.9
925,628 + CSW01_04440 0.77 +0.6
925,673 - CSW01_04440 0.88 -0.2
925,698 + +0.1
925,706 - -2.6
925,706 - -0.6
925,712 + +0.1
925,779 + +0.3
925,826 + CSW01_04445 0.18 -0.5
925,844 - CSW01_04445 0.23 +0.3
925,964 + CSW01_04445 0.55 -0.8
926,080 + CSW01_04445 0.87 -0.6
926,086 + CSW01_04445 0.88 +1.1
926,094 - -1.5
926,276 - -1.2
926,434 + CSW01_04450 0.20 -3.5
926,437 - CSW01_04450 0.20 -2.2
926,442 - CSW01_04450 0.21 -0.2
926,442 - CSW01_04450 0.21 +0.7
926,442 - CSW01_04450 0.21 -1.0
926,452 + CSW01_04450 0.21 +1.3
926,452 + CSW01_04450 0.21 +0.7
926,467 + CSW01_04450 0.22 +0.9
926,475 - CSW01_04450 0.23 -0.1
926,475 - CSW01_04450 0.23 -0.3
926,486 + CSW01_04450 0.23 -0.5
926,533 - CSW01_04450 0.26 -1.7
926,549 + CSW01_04450 0.27 +0.7
926,559 - CSW01_04450 0.28 -1.6
926,616 - CSW01_04450 0.32 +0.5

Or see this region's nucleotide sequence