Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04400

Experiment: ICP1_phage_235.3_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04395 and CSW01_04400 are separated by 129 nucleotidesCSW01_04400 and CSW01_04405 are separated by 145 nucleotides CSW01_04395: CSW01_04395 - DNA repair protein RecN, at 915,472 to 917,136 _04395 CSW01_04400: CSW01_04400 - NAD(+) kinase, at 917,266 to 918,150 _04400 CSW01_04405: CSW01_04405 - nucleotide exchange factor GrpE, at 918,296 to 918,898 _04405 Position (kb) 917 918 919Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 916.287 kb on + strand, within CSW01_04395at 916.295 kb on - strand, within CSW01_04395at 916.295 kb on - strand, within CSW01_04395at 916.295 kb on - strand, within CSW01_04395at 916.312 kb on + strand, within CSW01_04395at 916.337 kb on - strand, within CSW01_04395at 916.337 kb on - strand, within CSW01_04395at 916.337 kb on - strand, within CSW01_04395at 916.339 kb on - strand, within CSW01_04395at 916.386 kb on + strand, within CSW01_04395at 916.386 kb on + strand, within CSW01_04395at 916.386 kb on + strand, within CSW01_04395at 916.388 kb on - strand, within CSW01_04395at 916.394 kb on - strand, within CSW01_04395at 916.394 kb on - strand, within CSW01_04395at 916.394 kb on - strand, within CSW01_04395at 916.404 kb on + strand, within CSW01_04395at 916.404 kb on + strand, within CSW01_04395at 916.412 kb on - strand, within CSW01_04395at 916.412 kb on - strand, within CSW01_04395at 916.412 kb on - strand, within CSW01_04395at 916.413 kb on - strand, within CSW01_04395at 916.430 kb on + strand, within CSW01_04395at 916.430 kb on + strand, within CSW01_04395at 916.430 kb on + strand, within CSW01_04395at 916.430 kb on + strand, within CSW01_04395at 916.430 kb on + strand, within CSW01_04395at 916.438 kb on - strand, within CSW01_04395at 916.440 kb on + strand, within CSW01_04395at 916.448 kb on - strand, within CSW01_04395at 916.511 kb on - strand, within CSW01_04395at 916.651 kb on + strand, within CSW01_04395at 916.664 kb on + strand, within CSW01_04395at 916.672 kb on - strand, within CSW01_04395at 916.672 kb on - strand, within CSW01_04395at 916.677 kb on + strand, within CSW01_04395at 916.682 kb on - strand, within CSW01_04395at 916.711 kb on - strand, within CSW01_04395at 916.729 kb on - strand, within CSW01_04395at 916.731 kb on + strand, within CSW01_04395at 916.781 kb on + strand, within CSW01_04395at 916.800 kb on + strand, within CSW01_04395at 916.808 kb on - strand, within CSW01_04395at 916.808 kb on - strand, within CSW01_04395at 916.831 kb on + strand, within CSW01_04395at 916.839 kb on - strand, within CSW01_04395at 916.860 kb on + strand, within CSW01_04395at 916.875 kb on - strand, within CSW01_04395at 916.893 kb on + strand, within CSW01_04395at 916.893 kb on + strand, within CSW01_04395at 916.901 kb on - strand, within CSW01_04395at 916.922 kb on - strand, within CSW01_04395at 916.952 kb on + strand, within CSW01_04395at 917.037 kb on - strandat 917.052 kb on - strandat 917.231 kb on + strandat 917.231 kb on + strandat 917.239 kb on - strandat 917.239 kb on - strandat 917.239 kb on - strandat 918.261 kb on + strandat 918.261 kb on + strandat 918.279 kb on - strandat 918.909 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep2
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916,287 + CSW01_04395 0.49 +0.8
916,295 - CSW01_04395 0.49 +0.1
916,295 - CSW01_04395 0.49 -2.2
916,295 - CSW01_04395 0.49 +0.5
916,312 + CSW01_04395 0.50 +0.9
916,337 - CSW01_04395 0.52 -3.2
916,337 - CSW01_04395 0.52 +0.1
916,337 - CSW01_04395 0.52 -0.9
916,339 - CSW01_04395 0.52 -2.4
916,386 + CSW01_04395 0.55 +0.3
916,386 + CSW01_04395 0.55 -0.6
916,386 + CSW01_04395 0.55 -1.0
916,388 - CSW01_04395 0.55 -1.5
916,394 - CSW01_04395 0.55 +0.6
916,394 - CSW01_04395 0.55 -3.0
916,394 - CSW01_04395 0.55 +0.8
916,404 + CSW01_04395 0.56 +1.8
916,404 + CSW01_04395 0.56 +0.3
916,412 - CSW01_04395 0.56 -0.0
916,412 - CSW01_04395 0.56 +0.5
916,412 - CSW01_04395 0.56 -3.2
916,413 - CSW01_04395 0.57 -0.5
916,430 + CSW01_04395 0.58 -0.9
916,430 + CSW01_04395 0.58 -1.7
916,430 + CSW01_04395 0.58 -1.8
916,430 + CSW01_04395 0.58 +1.5
916,430 + CSW01_04395 0.58 +1.1
916,438 - CSW01_04395 0.58 +0.6
916,440 + CSW01_04395 0.58 -3.4
916,448 - CSW01_04395 0.59 -3.1
916,511 - CSW01_04395 0.62 -2.2
916,651 + CSW01_04395 0.71 -0.0
916,664 + CSW01_04395 0.72 +0.2
916,672 - CSW01_04395 0.72 -0.9
916,672 - CSW01_04395 0.72 -0.7
916,677 + CSW01_04395 0.72 -0.2
916,682 - CSW01_04395 0.73 -0.9
916,711 - CSW01_04395 0.74 -2.5
916,729 - CSW01_04395 0.75 +0.9
916,731 + CSW01_04395 0.76 +2.3
916,781 + CSW01_04395 0.79 -2.3
916,800 + CSW01_04395 0.80 +0.7
916,808 - CSW01_04395 0.80 -2.5
916,808 - CSW01_04395 0.80 -2.7
916,831 + CSW01_04395 0.82 -2.0
916,839 - CSW01_04395 0.82 +0.1
916,860 + CSW01_04395 0.83 -0.2
916,875 - CSW01_04395 0.84 -1.2
916,893 + CSW01_04395 0.85 -1.3
916,893 + CSW01_04395 0.85 -1.8
916,901 - CSW01_04395 0.86 +0.8
916,922 - CSW01_04395 0.87 -1.2
916,952 + CSW01_04395 0.89 +0.3
917,037 - -0.4
917,052 - +1.9
917,231 + +1.0
917,231 + +0.4
917,239 - +0.9
917,239 - -0.4
917,239 - -0.4
918,261 + +0.6
918,261 + -2.7
918,279 - -0.5
918,909 - -0.5

Or see this region's nucleotide sequence