Experiment: ICP1_phage_235.3_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_04180 and CSW01_04185 are separated by 333 nucleotides CSW01_04185 and CSW01_04190 are separated by 69 nucleotides
CSW01_04180: CSW01_04180 - hypothetical protein, at 863,987 to 864,502
_04180
CSW01_04185: CSW01_04185 - nuclease, at 864,836 to 865,540
_04185
CSW01_04190: CSW01_04190 - DEAD/DEAH box helicase, at 865,610 to 868,549
_04190
Position (kb) 864
865
866 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 863.878 kb on - strand at 863.995 kb on + strand at 864.068 kb on - strand, within CSW01_04180 at 864.090 kb on - strand, within CSW01_04180 at 864.097 kb on + strand, within CSW01_04180 at 864.097 kb on + strand, within CSW01_04180 at 864.097 kb on + strand, within CSW01_04180 at 864.108 kb on + strand, within CSW01_04180 at 864.116 kb on - strand, within CSW01_04180 at 864.116 kb on - strand, within CSW01_04180 at 864.118 kb on + strand, within CSW01_04180 at 864.118 kb on + strand, within CSW01_04180 at 864.120 kb on + strand, within CSW01_04180 at 864.126 kb on - strand, within CSW01_04180 at 864.126 kb on - strand, within CSW01_04180 at 864.126 kb on - strand, within CSW01_04180 at 864.132 kb on + strand, within CSW01_04180 at 864.163 kb on + strand, within CSW01_04180 at 864.195 kb on + strand, within CSW01_04180 at 864.203 kb on - strand, within CSW01_04180 at 864.209 kb on + strand, within CSW01_04180 at 864.215 kb on - strand, within CSW01_04180 at 864.215 kb on - strand, within CSW01_04180 at 864.277 kb on + strand, within CSW01_04180 at 864.287 kb on + strand, within CSW01_04180 at 864.292 kb on + strand, within CSW01_04180 at 864.292 kb on + strand, within CSW01_04180 at 864.292 kb on + strand, within CSW01_04180 at 864.292 kb on + strand, within CSW01_04180 at 864.292 kb on + strand, within CSW01_04180 at 864.292 kb on + strand, within CSW01_04180 at 864.292 kb on + strand, within CSW01_04180 at 864.292 kb on + strand, within CSW01_04180 at 864.292 kb on + strand, within CSW01_04180 at 864.292 kb on + strand, within CSW01_04180 at 864.292 kb on + strand, within CSW01_04180 at 864.292 kb on + strand, within CSW01_04180 at 864.292 kb on + strand, within CSW01_04180 at 864.292 kb on + strand, within CSW01_04180 at 864.292 kb on + strand, within CSW01_04180 at 864.292 kb on + strand, within CSW01_04180 at 864.292 kb on + strand, within CSW01_04180 at 864.295 kb on - strand, within CSW01_04180 at 864.300 kb on - strand, within CSW01_04180 at 864.300 kb on - strand, within CSW01_04180 at 864.300 kb on - strand, within CSW01_04180 at 864.300 kb on - strand, within CSW01_04180 at 864.300 kb on - strand, within CSW01_04180 at 864.300 kb on - strand, within CSW01_04180 at 864.300 kb on - strand, within CSW01_04180 at 864.326 kb on - strand, within CSW01_04180 at 864.329 kb on + strand, within CSW01_04180 at 864.336 kb on + strand, within CSW01_04180 at 864.336 kb on + strand, within CSW01_04180 at 864.337 kb on - strand, within CSW01_04180 at 864.345 kb on - strand, within CSW01_04180 at 864.356 kb on - strand, within CSW01_04180 at 864.395 kb on + strand, within CSW01_04180 at 864.506 kb on + strand at 864.536 kb on + strand at 864.544 kb on - strand at 864.544 kb on - strand at 864.549 kb on - strand at 864.556 kb on - strand at 864.629 kb on - strand at 864.641 kb on + strand at 864.663 kb on - strand at 864.671 kb on - strand at 864.712 kb on + strand at 864.751 kb on - strand at 864.751 kb on - strand at 864.789 kb on + strand at 864.856 kb on + strand at 864.864 kb on - strand at 864.864 kb on - strand at 864.864 kb on - strand at 865.081 kb on - strand, within CSW01_04185 at 865.091 kb on - strand, within CSW01_04185 at 865.099 kb on + strand, within CSW01_04185 at 865.100 kb on + strand, within CSW01_04185 at 865.100 kb on + strand, within CSW01_04185 at 865.100 kb on + strand, within CSW01_04185 at 865.100 kb on + strand, within CSW01_04185 at 865.100 kb on + strand, within CSW01_04185 at 865.100 kb on + strand, within CSW01_04185 at 865.100 kb on + strand, within CSW01_04185 at 865.100 kb on + strand, within CSW01_04185 at 865.100 kb on + strand, within CSW01_04185 at 865.100 kb on + strand, within CSW01_04185 at 865.108 kb on - strand, within CSW01_04185 at 865.108 kb on - strand, within CSW01_04185 at 865.108 kb on - strand, within CSW01_04185 at 865.108 kb on - strand, within CSW01_04185 at 865.108 kb on - strand, within CSW01_04185 at 865.108 kb on - strand, within CSW01_04185 at 865.108 kb on - strand, within CSW01_04185 at 865.108 kb on - strand, within CSW01_04185 at 865.108 kb on - strand, within CSW01_04185 at 865.111 kb on + strand, within CSW01_04185 at 865.111 kb on + strand, within CSW01_04185 at 865.115 kb on + strand, within CSW01_04185 at 865.117 kb on - strand, within CSW01_04185 at 865.118 kb on - strand, within CSW01_04185 at 865.125 kb on - strand, within CSW01_04185 at 865.125 kb on - strand, within CSW01_04185 at 865.155 kb on + strand, within CSW01_04185 at 865.177 kb on + strand, within CSW01_04185 at 865.220 kb on + strand, within CSW01_04185 at 865.225 kb on + strand, within CSW01_04185 at 865.232 kb on + strand, within CSW01_04185 at 865.232 kb on + strand, within CSW01_04185 at 865.232 kb on + strand, within CSW01_04185 at 865.232 kb on + strand, within CSW01_04185 at 865.232 kb on + strand, within CSW01_04185 at 865.232 kb on + strand, within CSW01_04185 at 865.232 kb on + strand, within CSW01_04185 at 865.237 kb on + strand, within CSW01_04185 at 865.240 kb on - strand, within CSW01_04185 at 865.240 kb on - strand, within CSW01_04185 at 865.240 kb on - strand, within CSW01_04185 at 865.240 kb on - strand, within CSW01_04185 at 865.240 kb on - strand, within CSW01_04185 at 865.298 kb on + strand, within CSW01_04185 at 865.306 kb on - strand, within CSW01_04185 at 865.357 kb on + strand, within CSW01_04185 at 865.365 kb on - strand, within CSW01_04185 at 865.387 kb on - strand, within CSW01_04185 at 865.493 kb on - strand at 865.650 kb on + strand at 865.650 kb on + strand at 865.650 kb on + strand at 865.650 kb on + strand at 865.650 kb on + strand at 865.650 kb on + strand at 865.650 kb on + strand at 865.650 kb on + strand at 865.650 kb on + strand at 865.650 kb on + strand at 865.650 kb on + strand at 865.650 kb on + strand at 865.650 kb on + strand at 865.650 kb on + strand at 865.650 kb on + strand at 865.650 kb on + strand at 865.658 kb on - strand at 865.658 kb on - strand at 865.658 kb on - strand at 865.658 kb on - strand at 865.658 kb on - strand at 865.658 kb on - strand at 865.658 kb on - strand at 865.658 kb on - strand at 865.658 kb on - strand at 865.658 kb on - strand at 865.658 kb on - strand at 865.658 kb on - strand at 865.691 kb on - strand at 865.737 kb on + strand at 865.764 kb on + strand at 865.764 kb on + strand at 865.766 kb on + strand at 865.766 kb on + strand at 865.766 kb on + strand at 865.766 kb on + strand at 865.766 kb on + strand at 865.766 kb on + strand at 865.766 kb on + strand at 865.766 kb on + strand at 865.766 kb on + strand at 865.772 kb on - strand at 865.774 kb on - strand at 865.774 kb on - strand at 865.779 kb on - strand at 865.795 kb on + strand at 865.824 kb on + strand at 865.825 kb on + strand at 865.825 kb on + strand at 865.825 kb on + strand at 865.825 kb on + strand at 865.826 kb on - strand at 865.833 kb on - strand at 865.833 kb on - strand at 865.838 kb on - strand at 865.839 kb on + strand at 865.843 kb on - strand at 865.906 kb on + strand, within CSW01_04190 at 865.907 kb on + strand, within CSW01_04190 at 865.907 kb on + strand, within CSW01_04190 at 865.946 kb on - strand, within CSW01_04190 at 865.973 kb on + strand, within CSW01_04190 at 865.987 kb on + strand, within CSW01_04190 at 865.987 kb on + strand, within CSW01_04190 at 865.987 kb on + strand, within CSW01_04190 at 865.992 kb on + strand, within CSW01_04190 at 865.995 kb on - strand, within CSW01_04190 at 865.995 kb on - strand, within CSW01_04190 at 866.027 kb on - strand, within CSW01_04190 at 866.039 kb on - strand, within CSW01_04190 at 866.039 kb on - strand, within CSW01_04190 at 866.041 kb on + strand, within CSW01_04190 at 866.041 kb on + strand, within CSW01_04190 at 866.041 kb on + strand, within CSW01_04190 at 866.044 kb on - strand, within CSW01_04190 at 866.097 kb on + strand, within CSW01_04190 at 866.099 kb on - strand, within CSW01_04190 at 866.200 kb on - strand, within CSW01_04190 at 866.258 kb on - strand, within CSW01_04190 at 866.272 kb on - strand, within CSW01_04190 at 866.291 kb on + strand, within CSW01_04190 at 866.291 kb on + strand, within CSW01_04190 at 866.301 kb on + strand, within CSW01_04190 at 866.327 kb on + strand, within CSW01_04190 at 866.340 kb on + strand, within CSW01_04190 at 866.340 kb on + strand, within CSW01_04190 at 866.369 kb on + strand, within CSW01_04190 at 866.377 kb on - strand, within CSW01_04190 at 866.377 kb on - strand, within CSW01_04190 at 866.383 kb on + strand, within CSW01_04190 at 866.383 kb on + strand, within CSW01_04190 at 866.383 kb on + strand, within CSW01_04190 at 866.383 kb on + strand, within CSW01_04190 at 866.383 kb on + strand, within CSW01_04190 at 866.391 kb on - strand, within CSW01_04190 at 866.391 kb on - strand, within CSW01_04190 at 866.391 kb on - strand, within CSW01_04190 at 866.391 kb on - strand, within CSW01_04190 at 866.391 kb on - strand, within CSW01_04190 at 866.391 kb on - strand, within CSW01_04190 at 866.391 kb on - strand, within CSW01_04190 at 866.404 kb on + strand, within CSW01_04190 at 866.414 kb on + strand, within CSW01_04190 at 866.414 kb on - strand, within CSW01_04190 at 866.414 kb on - strand, within CSW01_04190 at 866.461 kb on + strand, within CSW01_04190 at 866.465 kb on + strand, within CSW01_04190 at 866.496 kb on + strand, within CSW01_04190 at 866.506 kb on + strand, within CSW01_04190
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep2 remove 863,878 - -0.4 863,995 + -1.6 864,068 - CSW01_04180 0.16 -0.2 864,090 - CSW01_04180 0.20 +1.2 864,097 + CSW01_04180 0.21 +1.2 864,097 + CSW01_04180 0.21 -0.4 864,097 + CSW01_04180 0.21 +0.9 864,108 + CSW01_04180 0.23 +0.6 864,116 - CSW01_04180 0.25 -2.0 864,116 - CSW01_04180 0.25 -0.9 864,118 + CSW01_04180 0.25 +0.3 864,118 + CSW01_04180 0.25 +1.1 864,120 + CSW01_04180 0.26 -3.5 864,126 - CSW01_04180 0.27 +1.5 864,126 - CSW01_04180 0.27 +0.2 864,126 - CSW01_04180 0.27 -2.6 864,132 + CSW01_04180 0.28 +0.1 864,163 + CSW01_04180 0.34 +0.6 864,195 + CSW01_04180 0.40 -0.7 864,203 - CSW01_04180 0.42 +1.1 864,209 + CSW01_04180 0.43 +0.1 864,215 - CSW01_04180 0.44 -0.8 864,215 - CSW01_04180 0.44 -2.4 864,277 + CSW01_04180 0.56 -0.1 864,287 + CSW01_04180 0.58 +0.1 864,292 + CSW01_04180 0.59 -0.1 864,292 + CSW01_04180 0.59 -0.4 864,292 + CSW01_04180 0.59 +1.9 864,292 + CSW01_04180 0.59 +0.4 864,292 + CSW01_04180 0.59 +0.4 864,292 + CSW01_04180 0.59 -2.1 864,292 + CSW01_04180 0.59 +1.4 864,292 + CSW01_04180 0.59 +1.2 864,292 + CSW01_04180 0.59 -0.3 864,292 + CSW01_04180 0.59 +0.1 864,292 + CSW01_04180 0.59 -0.8 864,292 + CSW01_04180 0.59 +1.1 864,292 + CSW01_04180 0.59 +0.6 864,292 + CSW01_04180 0.59 -0.4 864,292 + CSW01_04180 0.59 +0.9 864,292 + CSW01_04180 0.59 -2.3 864,292 + CSW01_04180 0.59 +0.8 864,295 - CSW01_04180 0.60 +1.2 864,300 - CSW01_04180 0.61 -1.2 864,300 - CSW01_04180 0.61 -0.6 864,300 - CSW01_04180 0.61 -2.4 864,300 - CSW01_04180 0.61 +0.5 864,300 - CSW01_04180 0.61 -0.6 864,300 - CSW01_04180 0.61 -1.3 864,300 - CSW01_04180 0.61 -1.2 864,326 - CSW01_04180 0.66 -0.2 864,329 + CSW01_04180 0.66 +1.6 864,336 + CSW01_04180 0.68 -4.1 864,336 + CSW01_04180 0.68 -0.4 864,337 - CSW01_04180 0.68 -1.4 864,345 - CSW01_04180 0.69 -1.9 864,356 - CSW01_04180 0.72 -0.6 864,395 + CSW01_04180 0.79 +0.4 864,506 + -0.3 864,536 + -2.9 864,544 - +0.3 864,544 - +0.9 864,549 - -2.6 864,556 - -3.2 864,629 - -0.4 864,641 + -0.3 864,663 - +1.0 864,671 - +0.1 864,712 + +0.8 864,751 - +0.8 864,751 - -0.4 864,789 + -0.5 864,856 + -1.6 864,864 - -2.6 864,864 - -0.4 864,864 - +0.2 865,081 - CSW01_04185 0.35 +1.9 865,091 - CSW01_04185 0.36 +0.7 865,099 + CSW01_04185 0.37 +1.4 865,100 + CSW01_04185 0.37 +0.2 865,100 + CSW01_04185 0.37 -1.2 865,100 + CSW01_04185 0.37 -2.9 865,100 + CSW01_04185 0.37 -1.6 865,100 + CSW01_04185 0.37 +1.0 865,100 + CSW01_04185 0.37 -0.3 865,100 + CSW01_04185 0.37 -0.2 865,100 + CSW01_04185 0.37 +1.3 865,100 + CSW01_04185 0.37 +1.4 865,100 + CSW01_04185 0.37 +0.8 865,108 - CSW01_04185 0.39 -0.8 865,108 - CSW01_04185 0.39 -2.6 865,108 - CSW01_04185 0.39 +0.7 865,108 - CSW01_04185 0.39 +0.4 865,108 - CSW01_04185 0.39 -1.3 865,108 - CSW01_04185 0.39 +0.0 865,108 - CSW01_04185 0.39 -0.1 865,108 - CSW01_04185 0.39 -2.4 865,108 - CSW01_04185 0.39 -0.5 865,111 + CSW01_04185 0.39 -0.0 865,111 + CSW01_04185 0.39 +0.4 865,115 + CSW01_04185 0.40 +0.7 865,117 - CSW01_04185 0.40 +0.3 865,118 - CSW01_04185 0.40 -2.4 865,125 - CSW01_04185 0.41 -3.6 865,125 - CSW01_04185 0.41 -0.4 865,155 + CSW01_04185 0.45 -2.2 865,177 + CSW01_04185 0.48 -3.4 865,220 + CSW01_04185 0.54 +0.0 865,225 + CSW01_04185 0.55 -0.5 865,232 + CSW01_04185 0.56 -1.4 865,232 + CSW01_04185 0.56 +0.9 865,232 + CSW01_04185 0.56 -1.1 865,232 + CSW01_04185 0.56 -0.2 865,232 + CSW01_04185 0.56 -0.5 865,232 + CSW01_04185 0.56 -2.4 865,232 + CSW01_04185 0.56 +0.3 865,237 + CSW01_04185 0.57 -0.1 865,240 - CSW01_04185 0.57 -0.7 865,240 - CSW01_04185 0.57 +0.7 865,240 - CSW01_04185 0.57 -0.5 865,240 - CSW01_04185 0.57 +0.0 865,240 - CSW01_04185 0.57 -1.3 865,298 + CSW01_04185 0.66 -0.5 865,306 - CSW01_04185 0.67 -1.7 865,357 + CSW01_04185 0.74 -0.0 865,365 - CSW01_04185 0.75 +0.1 865,387 - CSW01_04185 0.78 +0.3 865,493 - +0.4 865,650 + -0.2 865,650 + -1.9 865,650 + +0.3 865,650 + -2.3 865,650 + -1.1 865,650 + +2.4 865,650 + -2.1 865,650 + +0.6 865,650 + -0.3 865,650 + -0.1 865,650 + +0.3 865,650 + +0.3 865,650 + +0.1 865,650 + -1.9 865,650 + +0.7 865,650 + +0.4 865,658 - +2.1 865,658 - -2.4 865,658 - +1.9 865,658 - +0.4 865,658 - -1.3 865,658 - -1.3 865,658 - -1.3 865,658 - -0.1 865,658 - +0.3 865,658 - +0.5 865,658 - +1.2 865,658 - -4.2 865,691 - +0.6 865,737 + -2.2 865,764 + +1.1 865,764 + +0.5 865,766 + +0.1 865,766 + +1.6 865,766 + +1.6 865,766 + -1.2 865,766 + -1.1 865,766 + +1.2 865,766 + +1.2 865,766 + -1.7 865,766 + -1.1 865,772 - -0.8 865,774 - -0.1 865,774 - -0.0 865,779 - -0.8 865,795 + +1.3 865,824 + -1.7 865,825 + -1.0 865,825 + -0.2 865,825 + -0.1 865,825 + -2.8 865,826 - -0.1 865,833 - +0.6 865,833 - +0.8 865,838 - +1.2 865,839 + -2.1 865,843 - +0.5 865,906 + CSW01_04190 0.10 +1.0 865,907 + CSW01_04190 0.10 +0.9 865,907 + CSW01_04190 0.10 -2.2 865,946 - CSW01_04190 0.11 -1.6 865,973 + CSW01_04190 0.12 +0.3 865,987 + CSW01_04190 0.13 -0.9 865,987 + CSW01_04190 0.13 -1.6 865,987 + CSW01_04190 0.13 +0.5 865,992 + CSW01_04190 0.13 +2.1 865,995 - CSW01_04190 0.13 +1.1 865,995 - CSW01_04190 0.13 -2.5 866,027 - CSW01_04190 0.14 -0.1 866,039 - CSW01_04190 0.15 +0.2 866,039 - CSW01_04190 0.15 +0.4 866,041 + CSW01_04190 0.15 +0.4 866,041 + CSW01_04190 0.15 +0.2 866,041 + CSW01_04190 0.15 +1.2 866,044 - CSW01_04190 0.15 -1.2 866,097 + CSW01_04190 0.17 -2.4 866,099 - CSW01_04190 0.17 +0.8 866,200 - CSW01_04190 0.20 -0.3 866,258 - CSW01_04190 0.22 -0.1 866,272 - CSW01_04190 0.23 -0.4 866,291 + CSW01_04190 0.23 -0.8 866,291 + CSW01_04190 0.23 +0.5 866,301 + CSW01_04190 0.24 -0.1 866,327 + CSW01_04190 0.24 +1.8 866,340 + CSW01_04190 0.25 -1.1 866,340 + CSW01_04190 0.25 -2.2 866,369 + CSW01_04190 0.26 -0.2 866,377 - CSW01_04190 0.26 +0.5 866,377 - CSW01_04190 0.26 +0.1 866,383 + CSW01_04190 0.26 -1.5 866,383 + CSW01_04190 0.26 -1.2 866,383 + CSW01_04190 0.26 +1.5 866,383 + CSW01_04190 0.26 -0.9 866,383 + CSW01_04190 0.26 +0.3 866,391 - CSW01_04190 0.27 -0.7 866,391 - CSW01_04190 0.27 +0.2 866,391 - CSW01_04190 0.27 -0.1 866,391 - CSW01_04190 0.27 -0.3 866,391 - CSW01_04190 0.27 +0.3 866,391 - CSW01_04190 0.27 +0.3 866,391 - CSW01_04190 0.27 +1.3 866,404 + CSW01_04190 0.27 +0.3 866,414 + CSW01_04190 0.27 +0.0 866,414 - CSW01_04190 0.27 -0.1 866,414 - CSW01_04190 0.27 -2.2 866,461 + CSW01_04190 0.29 +0.8 866,465 + CSW01_04190 0.29 +0.0 866,496 + CSW01_04190 0.30 -0.1 866,506 + CSW01_04190 0.30 -0.9
Or see this region's nucleotide sequence