Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04135

Experiment: ICP1_phage_235.3_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04130 and CSW01_04135 overlap by 4 nucleotidesCSW01_04135 and CSW01_04140 overlap by 23 nucleotides CSW01_04130: CSW01_04130 - citrate lyase subunit alpha, at 854,203 to 855,732 _04130 CSW01_04135: CSW01_04135 - apo-citrate lyase phosphoribosyl-dephospho-CoA transferase, at 855,729 to 856,265 _04135 CSW01_04140: CSW01_04140 - triphosphoribosyl-dephospho-CoA synthase, at 856,243 to 857,184 _04140 Position (kb) 855 856 857Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 854.729 kb on - strand, within CSW01_04130at 854.742 kb on + strand, within CSW01_04130at 854.750 kb on - strand, within CSW01_04130at 854.967 kb on - strand, within CSW01_04130at 855.033 kb on - strand, within CSW01_04130at 855.095 kb on - strand, within CSW01_04130at 855.114 kb on - strand, within CSW01_04130at 855.252 kb on - strand, within CSW01_04130at 855.327 kb on + strand, within CSW01_04130at 855.358 kb on - strand, within CSW01_04130at 855.359 kb on + strand, within CSW01_04130at 855.393 kb on - strand, within CSW01_04130at 855.430 kb on + strand, within CSW01_04130at 855.455 kb on - strand, within CSW01_04130at 855.485 kb on - strand, within CSW01_04130at 855.517 kb on + strand, within CSW01_04130at 855.517 kb on + strand, within CSW01_04130at 855.525 kb on - strand, within CSW01_04130at 855.717 kb on + strandat 855.725 kb on + strandat 855.733 kb on - strandat 855.757 kb on + strandat 855.757 kb on + strandat 855.757 kb on + strandat 855.757 kb on + strandat 855.757 kb on + strandat 855.757 kb on + strandat 855.757 kb on + strandat 855.757 kb on + strandat 855.765 kb on - strandat 855.776 kb on + strandat 855.875 kb on - strand, within CSW01_04135at 855.880 kb on - strand, within CSW01_04135at 855.927 kb on - strand, within CSW01_04135at 856.129 kb on - strand, within CSW01_04135at 856.136 kb on - strand, within CSW01_04135at 856.168 kb on - strand, within CSW01_04135at 856.178 kb on + strand, within CSW01_04135at 856.186 kb on - strand, within CSW01_04135at 856.207 kb on - strand, within CSW01_04135at 856.212 kb on - strandat 856.212 kb on - strandat 856.212 kb on - strandat 856.272 kb on + strandat 856.285 kb on + strandat 856.314 kb on - strandat 856.357 kb on + strand, within CSW01_04140at 856.360 kb on - strand, within CSW01_04140at 856.364 kb on + strand, within CSW01_04140at 856.445 kb on + strand, within CSW01_04140at 856.480 kb on - strand, within CSW01_04140at 856.509 kb on - strand, within CSW01_04140at 856.509 kb on - strand, within CSW01_04140at 856.544 kb on + strand, within CSW01_04140at 856.573 kb on - strand, within CSW01_04140at 856.599 kb on + strand, within CSW01_04140at 856.600 kb on - strand, within CSW01_04140at 856.667 kb on - strand, within CSW01_04140at 856.674 kb on + strand, within CSW01_04140at 856.692 kb on + strand, within CSW01_04140at 856.692 kb on + strand, within CSW01_04140at 856.743 kb on + strand, within CSW01_04140at 856.743 kb on + strand, within CSW01_04140at 856.743 kb on + strand, within CSW01_04140at 856.751 kb on - strand, within CSW01_04140at 856.755 kb on + strand, within CSW01_04140at 856.797 kb on + strand, within CSW01_04140at 856.812 kb on - strand, within CSW01_04140at 856.812 kb on - strand, within CSW01_04140at 856.812 kb on - strand, within CSW01_04140at 856.831 kb on + strand, within CSW01_04140at 856.837 kb on + strand, within CSW01_04140at 856.839 kb on - strand, within CSW01_04140at 856.896 kb on + strand, within CSW01_04140at 856.896 kb on + strand, within CSW01_04140at 856.904 kb on - strand, within CSW01_04140at 856.904 kb on - strand, within CSW01_04140at 856.906 kb on + strand, within CSW01_04140at 856.912 kb on + strand, within CSW01_04140at 856.995 kb on - strand, within CSW01_04140at 856.995 kb on - strand, within CSW01_04140at 857.061 kb on + strand, within CSW01_04140at 857.084 kb on - strand, within CSW01_04140at 857.100 kb on + strandat 857.165 kb on + strandat 857.178 kb on + strandat 857.178 kb on + strandat 857.186 kb on - strandat 857.221 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep2
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854,729 - CSW01_04130 0.34 +0.3
854,742 + CSW01_04130 0.35 +3.2
854,750 - CSW01_04130 0.36 -4.5
854,967 - CSW01_04130 0.50 +0.8
855,033 - CSW01_04130 0.54 -0.6
855,095 - CSW01_04130 0.58 +0.2
855,114 - CSW01_04130 0.60 -2.3
855,252 - CSW01_04130 0.69 +0.6
855,327 + CSW01_04130 0.73 -0.1
855,358 - CSW01_04130 0.75 -1.5
855,359 + CSW01_04130 0.76 +1.2
855,393 - CSW01_04130 0.78 -2.2
855,430 + CSW01_04130 0.80 +0.7
855,455 - CSW01_04130 0.82 +1.5
855,485 - CSW01_04130 0.84 +0.8
855,517 + CSW01_04130 0.86 +2.9
855,517 + CSW01_04130 0.86 +0.6
855,525 - CSW01_04130 0.86 -1.4
855,717 + +0.9
855,725 + -2.1
855,733 - +0.9
855,757 + +0.9
855,757 + +0.1
855,757 + -0.6
855,757 + +0.6
855,757 + +1.3
855,757 + -0.2
855,757 + +0.3
855,757 + +1.2
855,765 - -2.8
855,776 + -0.6
855,875 - CSW01_04135 0.27 -0.7
855,880 - CSW01_04135 0.28 -1.0
855,927 - CSW01_04135 0.37 -2.4
856,129 - CSW01_04135 0.74 -2.9
856,136 - CSW01_04135 0.76 -2.8
856,168 - CSW01_04135 0.82 -3.3
856,178 + CSW01_04135 0.84 +0.0
856,186 - CSW01_04135 0.85 -1.2
856,207 - CSW01_04135 0.89 -2.2
856,212 - +0.3
856,212 - -1.2
856,212 - -0.7
856,272 + +1.3
856,285 + +0.6
856,314 - -0.9
856,357 + CSW01_04140 0.12 -0.4
856,360 - CSW01_04140 0.12 +1.5
856,364 + CSW01_04140 0.13 +1.7
856,445 + CSW01_04140 0.21 -2.4
856,480 - CSW01_04140 0.25 +1.4
856,509 - CSW01_04140 0.28 +1.1
856,509 - CSW01_04140 0.28 -0.3
856,544 + CSW01_04140 0.32 -3.4
856,573 - CSW01_04140 0.35 +1.0
856,599 + CSW01_04140 0.38 +1.0
856,600 - CSW01_04140 0.38 +0.1
856,667 - CSW01_04140 0.45 +2.0
856,674 + CSW01_04140 0.46 +2.5
856,692 + CSW01_04140 0.48 +0.7
856,692 + CSW01_04140 0.48 -0.2
856,743 + CSW01_04140 0.53 +0.7
856,743 + CSW01_04140 0.53 +0.6
856,743 + CSW01_04140 0.53 -2.5
856,751 - CSW01_04140 0.54 -3.3
856,755 + CSW01_04140 0.54 -2.7
856,797 + CSW01_04140 0.59 +1.1
856,812 - CSW01_04140 0.60 -0.6
856,812 - CSW01_04140 0.60 +1.3
856,812 - CSW01_04140 0.60 +0.2
856,831 + CSW01_04140 0.62 +0.1
856,837 + CSW01_04140 0.63 +0.5
856,839 - CSW01_04140 0.63 +0.2
856,896 + CSW01_04140 0.69 +0.3
856,896 + CSW01_04140 0.69 -3.8
856,904 - CSW01_04140 0.70 +0.4
856,904 - CSW01_04140 0.70 -0.9
856,906 + CSW01_04140 0.70 -0.4
856,912 + CSW01_04140 0.71 -2.9
856,995 - CSW01_04140 0.80 +0.0
856,995 - CSW01_04140 0.80 +1.1
857,061 + CSW01_04140 0.87 +1.2
857,084 - CSW01_04140 0.89 +1.1
857,100 + -3.7
857,165 + -1.2
857,178 + -1.2
857,178 + +2.1
857,186 - -1.2
857,221 - +0.6

Or see this region's nucleotide sequence