Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04020

Experiment: ICP1_phage_235.3_MOI_rep2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_04010 and CSW01_04015 are separated by 167 nucleotidesCSW01_04015 and CSW01_04020 are separated by 11 nucleotidesCSW01_04020 and CSW01_04025 are separated by 177 nucleotides CSW01_04010: CSW01_04010 - vibriobactin biosynthesis isochorismate synthase, at 827,568 to 828,755 _04010 CSW01_04015: CSW01_04015 - 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase, at 828,923 to 829,711 _04015 CSW01_04020: CSW01_04020 - vibriobactin biosynthesis amide synthase VibH, at 829,723 to 831,039 _04020 CSW01_04025: CSW01_04025 - Fe2+-enterobactin ABC transporter substrate-binding protein, at 831,217 to 832,194 _04025 Position (kb) 829 830 831 832Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 828.752 kb on - strandat 828.978 kb on + strandat 828.978 kb on + strandat 828.978 kb on + strandat 828.978 kb on + strandat 828.978 kb on + strandat 828.978 kb on + strandat 828.986 kb on - strandat 828.986 kb on - strandat 828.986 kb on - strandat 829.119 kb on + strand, within CSW01_04015at 829.127 kb on - strand, within CSW01_04015at 829.137 kb on - strand, within CSW01_04015at 829.137 kb on - strand, within CSW01_04015at 829.169 kb on - strand, within CSW01_04015at 829.192 kb on + strand, within CSW01_04015at 829.283 kb on - strand, within CSW01_04015at 829.283 kb on - strand, within CSW01_04015at 829.301 kb on - strand, within CSW01_04015at 829.330 kb on + strand, within CSW01_04015at 829.333 kb on + strand, within CSW01_04015at 829.338 kb on - strand, within CSW01_04015at 829.362 kb on - strand, within CSW01_04015at 829.362 kb on - strand, within CSW01_04015at 829.362 kb on - strand, within CSW01_04015at 829.364 kb on + strand, within CSW01_04015at 829.439 kb on + strand, within CSW01_04015at 829.440 kb on - strand, within CSW01_04015at 829.447 kb on - strand, within CSW01_04015at 829.490 kb on - strand, within CSW01_04015at 829.516 kb on + strand, within CSW01_04015at 829.516 kb on + strand, within CSW01_04015at 829.516 kb on + strand, within CSW01_04015at 829.516 kb on + strand, within CSW01_04015at 829.516 kb on + strand, within CSW01_04015at 829.516 kb on + strand, within CSW01_04015at 829.516 kb on + strand, within CSW01_04015at 829.516 kb on + strand, within CSW01_04015at 829.516 kb on + strand, within CSW01_04015at 829.516 kb on + strand, within CSW01_04015at 829.524 kb on - strand, within CSW01_04015at 829.524 kb on - strand, within CSW01_04015at 829.524 kb on - strand, within CSW01_04015at 829.524 kb on - strand, within CSW01_04015at 829.524 kb on - strand, within CSW01_04015at 829.524 kb on - strand, within CSW01_04015at 829.524 kb on - strand, within CSW01_04015at 829.524 kb on - strand, within CSW01_04015at 829.524 kb on - strand, within CSW01_04015at 829.526 kb on + strand, within CSW01_04015at 829.526 kb on + strand, within CSW01_04015at 829.534 kb on - strand, within CSW01_04015at 829.534 kb on - strand, within CSW01_04015at 829.534 kb on - strand, within CSW01_04015at 829.663 kb on - strandat 829.763 kb on + strandat 829.763 kb on + strandat 829.775 kb on + strandat 829.785 kb on + strandat 829.885 kb on + strand, within CSW01_04020at 829.893 kb on - strand, within CSW01_04020at 829.893 kb on - strand, within CSW01_04020at 829.961 kb on - strand, within CSW01_04020at 829.964 kb on + strand, within CSW01_04020at 829.984 kb on - strand, within CSW01_04020at 830.145 kb on + strand, within CSW01_04020at 830.145 kb on + strand, within CSW01_04020at 830.145 kb on + strand, within CSW01_04020at 830.145 kb on + strand, within CSW01_04020at 830.145 kb on + strand, within CSW01_04020at 830.153 kb on - strand, within CSW01_04020at 830.153 kb on - strand, within CSW01_04020at 830.153 kb on - strand, within CSW01_04020at 830.208 kb on + strand, within CSW01_04020at 830.231 kb on - strand, within CSW01_04020at 830.265 kb on - strand, within CSW01_04020at 830.290 kb on - strand, within CSW01_04020at 830.304 kb on - strand, within CSW01_04020at 830.383 kb on + strand, within CSW01_04020at 830.401 kb on - strand, within CSW01_04020at 830.401 kb on - strand, within CSW01_04020at 830.401 kb on - strand, within CSW01_04020at 830.443 kb on + strand, within CSW01_04020at 830.448 kb on + strand, within CSW01_04020at 830.448 kb on + strand, within CSW01_04020at 830.451 kb on - strand, within CSW01_04020at 830.451 kb on - strand, within CSW01_04020at 830.488 kb on + strand, within CSW01_04020at 830.496 kb on - strand, within CSW01_04020at 830.555 kb on + strand, within CSW01_04020at 830.556 kb on - strand, within CSW01_04020at 830.636 kb on - strand, within CSW01_04020at 830.657 kb on - strand, within CSW01_04020at 830.668 kb on + strand, within CSW01_04020at 830.668 kb on + strand, within CSW01_04020at 830.679 kb on + strand, within CSW01_04020at 830.758 kb on - strand, within CSW01_04020at 830.808 kb on + strand, within CSW01_04020at 830.808 kb on + strand, within CSW01_04020at 830.811 kb on + strand, within CSW01_04020at 830.816 kb on - strand, within CSW01_04020at 830.862 kb on - strand, within CSW01_04020at 830.878 kb on + strand, within CSW01_04020at 830.886 kb on - strand, within CSW01_04020at 830.900 kb on + strand, within CSW01_04020at 830.900 kb on + strand, within CSW01_04020at 830.908 kb on - strandat 830.908 kb on - strandat 830.969 kb on - strandat 830.969 kb on - strandat 831.041 kb on + strandat 831.056 kb on - strandat 831.056 kb on - strandat 831.056 kb on - strandat 831.093 kb on + strandat 831.101 kb on - strandat 831.130 kb on + strandat 831.130 kb on + strandat 831.136 kb on - strandat 831.136 kb on - strandat 831.138 kb on - strandat 831.163 kb on + strandat 831.279 kb on + strandat 831.315 kb on + strand, within CSW01_04025at 831.349 kb on - strand, within CSW01_04025at 831.399 kb on + strand, within CSW01_04025at 831.401 kb on + strand, within CSW01_04025at 831.407 kb on - strand, within CSW01_04025at 831.438 kb on - strand, within CSW01_04025at 831.544 kb on + strand, within CSW01_04025at 831.592 kb on + strand, within CSW01_04025at 831.687 kb on + strand, within CSW01_04025at 831.693 kb on - strand, within CSW01_04025at 831.737 kb on + strand, within CSW01_04025at 831.745 kb on - strand, within CSW01_04025at 831.757 kb on - strand, within CSW01_04025at 831.757 kb on - strand, within CSW01_04025at 831.815 kb on + strand, within CSW01_04025at 831.823 kb on - strand, within CSW01_04025at 831.851 kb on + strand, within CSW01_04025at 831.876 kb on + strand, within CSW01_04025at 831.886 kb on + strand, within CSW01_04025at 831.948 kb on + strand, within CSW01_04025

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep2
remove
828,752 - -2.7
828,978 + +1.0
828,978 + -1.1
828,978 + -2.2
828,978 + +2.4
828,978 + -3.2
828,978 + +0.4
828,986 - +0.6
828,986 - +0.3
828,986 - +0.1
829,119 + CSW01_04015 0.25 +0.5
829,127 - CSW01_04015 0.26 +0.1
829,137 - CSW01_04015 0.27 +0.4
829,137 - CSW01_04015 0.27 +0.5
829,169 - CSW01_04015 0.31 -1.1
829,192 + CSW01_04015 0.34 -2.7
829,283 - CSW01_04015 0.46 -0.5
829,283 - CSW01_04015 0.46 +0.2
829,301 - CSW01_04015 0.48 +0.4
829,330 + CSW01_04015 0.52 -0.1
829,333 + CSW01_04015 0.52 +0.9
829,338 - CSW01_04015 0.53 -0.2
829,362 - CSW01_04015 0.56 -0.5
829,362 - CSW01_04015 0.56 -1.0
829,362 - CSW01_04015 0.56 +0.9
829,364 + CSW01_04015 0.56 -2.5
829,439 + CSW01_04015 0.65 +0.6
829,440 - CSW01_04015 0.66 -1.1
829,447 - CSW01_04015 0.66 -0.3
829,490 - CSW01_04015 0.72 +3.2
829,516 + CSW01_04015 0.75 -1.6
829,516 + CSW01_04015 0.75 +0.0
829,516 + CSW01_04015 0.75 -0.3
829,516 + CSW01_04015 0.75 -2.0
829,516 + CSW01_04015 0.75 +1.7
829,516 + CSW01_04015 0.75 -1.1
829,516 + CSW01_04015 0.75 -2.9
829,516 + CSW01_04015 0.75 -2.1
829,516 + CSW01_04015 0.75 -0.9
829,516 + CSW01_04015 0.75 +1.0
829,524 - CSW01_04015 0.76 +0.5
829,524 - CSW01_04015 0.76 -4.2
829,524 - CSW01_04015 0.76 +0.7
829,524 - CSW01_04015 0.76 -0.2
829,524 - CSW01_04015 0.76 +1.1
829,524 - CSW01_04015 0.76 +0.4
829,524 - CSW01_04015 0.76 +1.2
829,524 - CSW01_04015 0.76 +0.8
829,524 - CSW01_04015 0.76 -0.7
829,526 + CSW01_04015 0.76 -0.4
829,526 + CSW01_04015 0.76 +0.3
829,534 - CSW01_04015 0.77 +0.9
829,534 - CSW01_04015 0.77 -0.4
829,534 - CSW01_04015 0.77 +0.7
829,663 - -1.0
829,763 + -1.4
829,763 + -0.1
829,775 + -0.9
829,785 + +1.1
829,885 + CSW01_04020 0.12 -0.3
829,893 - CSW01_04020 0.13 -2.7
829,893 - CSW01_04020 0.13 +0.5
829,961 - CSW01_04020 0.18 -1.0
829,964 + CSW01_04020 0.18 -0.8
829,984 - CSW01_04020 0.20 -1.1
830,145 + CSW01_04020 0.32 +1.4
830,145 + CSW01_04020 0.32 -2.0
830,145 + CSW01_04020 0.32 +1.2
830,145 + CSW01_04020 0.32 -1.5
830,145 + CSW01_04020 0.32 -0.1
830,153 - CSW01_04020 0.33 +0.0
830,153 - CSW01_04020 0.33 +0.6
830,153 - CSW01_04020 0.33 +0.5
830,208 + CSW01_04020 0.37 -2.4
830,231 - CSW01_04020 0.39 -1.3
830,265 - CSW01_04020 0.41 +0.8
830,290 - CSW01_04020 0.43 -1.6
830,304 - CSW01_04020 0.44 -1.7
830,383 + CSW01_04020 0.50 +0.6
830,401 - CSW01_04020 0.51 +1.5
830,401 - CSW01_04020 0.51 +0.8
830,401 - CSW01_04020 0.51 -0.3
830,443 + CSW01_04020 0.55 -0.6
830,448 + CSW01_04020 0.55 +1.1
830,448 + CSW01_04020 0.55 -0.6
830,451 - CSW01_04020 0.55 +0.9
830,451 - CSW01_04020 0.55 +1.1
830,488 + CSW01_04020 0.58 -2.1
830,496 - CSW01_04020 0.59 +0.7
830,555 + CSW01_04020 0.63 +1.6
830,556 - CSW01_04020 0.63 +1.4
830,636 - CSW01_04020 0.69 +0.2
830,657 - CSW01_04020 0.71 -1.0
830,668 + CSW01_04020 0.72 +0.3
830,668 + CSW01_04020 0.72 +1.7
830,679 + CSW01_04020 0.73 -1.8
830,758 - CSW01_04020 0.79 +0.7
830,808 + CSW01_04020 0.82 -0.2
830,808 + CSW01_04020 0.82 +1.0
830,811 + CSW01_04020 0.83 +1.7
830,816 - CSW01_04020 0.83 -0.2
830,862 - CSW01_04020 0.86 -0.0
830,878 + CSW01_04020 0.88 -1.7
830,886 - CSW01_04020 0.88 +0.1
830,900 + CSW01_04020 0.89 +0.6
830,900 + CSW01_04020 0.89 +1.5
830,908 - -0.6
830,908 - +2.2
830,969 - -2.6
830,969 - -3.4
831,041 + -0.2
831,056 - -2.4
831,056 - -0.3
831,056 - -0.3
831,093 + -0.5
831,101 - +1.0
831,130 + +0.9
831,130 + +1.2
831,136 - +1.4
831,136 - -3.1
831,138 - +0.6
831,163 + +0.7
831,279 + -2.1
831,315 + CSW01_04025 0.10 +1.3
831,349 - CSW01_04025 0.13 -0.3
831,399 + CSW01_04025 0.19 -2.7
831,401 + CSW01_04025 0.19 +0.2
831,407 - CSW01_04025 0.19 -2.7
831,438 - CSW01_04025 0.23 -0.9
831,544 + CSW01_04025 0.33 -0.7
831,592 + CSW01_04025 0.38 -0.2
831,687 + CSW01_04025 0.48 -2.6
831,693 - CSW01_04025 0.49 -2.4
831,737 + CSW01_04025 0.53 -2.2
831,745 - CSW01_04025 0.54 +0.9
831,757 - CSW01_04025 0.55 -1.1
831,757 - CSW01_04025 0.55 +2.5
831,815 + CSW01_04025 0.61 -2.0
831,823 - CSW01_04025 0.62 +0.5
831,851 + CSW01_04025 0.65 +0.6
831,876 + CSW01_04025 0.67 -1.8
831,886 + CSW01_04025 0.68 -0.2
831,948 + CSW01_04025 0.75 -3.2

Or see this region's nucleotide sequence