Experiment: ICP1_phage_235.3_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_03860 and CSW01_03865 are separated by 14 nucleotides CSW01_03865 and CSW01_03870 are separated by 167 nucleotides
CSW01_03860: CSW01_03860 - protein translocase subunit SecD, at 794,585 to 796,438
_03860
CSW01_03865: CSW01_03865 - protein translocase subunit SecF, at 796,453 to 797,400
_03865
CSW01_03870: CSW01_03870 - inositol monophosphatase, at 797,568 to 798,371
_03870
Position (kb) 796
797
798 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 795.530 kb on - strand, within CSW01_03860 at 795.530 kb on - strand, within CSW01_03860 at 795.556 kb on - strand, within CSW01_03860 at 795.608 kb on + strand, within CSW01_03860 at 795.610 kb on + strand, within CSW01_03860 at 795.618 kb on - strand, within CSW01_03860 at 795.655 kb on - strand, within CSW01_03860 at 795.733 kb on + strand, within CSW01_03860 at 795.736 kb on - strand, within CSW01_03860 at 795.854 kb on + strand, within CSW01_03860 at 795.854 kb on + strand, within CSW01_03860 at 795.862 kb on - strand, within CSW01_03860 at 795.873 kb on - strand, within CSW01_03860 at 795.909 kb on + strand, within CSW01_03860 at 795.917 kb on - strand, within CSW01_03860 at 795.917 kb on - strand, within CSW01_03860 at 795.950 kb on + strand, within CSW01_03860 at 795.960 kb on + strand, within CSW01_03860 at 795.988 kb on + strand, within CSW01_03860 at 796.091 kb on + strand, within CSW01_03860 at 796.091 kb on + strand, within CSW01_03860 at 796.099 kb on - strand, within CSW01_03860 at 796.099 kb on - strand, within CSW01_03860 at 796.189 kb on - strand, within CSW01_03860 at 796.225 kb on - strand, within CSW01_03860 at 796.236 kb on - strand, within CSW01_03860 at 796.250 kb on - strand, within CSW01_03860 at 796.320 kb on - strand at 796.361 kb on - strand at 796.415 kb on + strand at 796.580 kb on - strand, within CSW01_03865 at 796.624 kb on - strand, within CSW01_03865 at 796.712 kb on + strand, within CSW01_03865 at 796.741 kb on + strand, within CSW01_03865 at 796.981 kb on + strand, within CSW01_03865 at 797.000 kb on - strand, within CSW01_03865 at 797.045 kb on + strand, within CSW01_03865 at 797.047 kb on + strand, within CSW01_03865 at 797.047 kb on + strand, within CSW01_03865 at 797.052 kb on + strand, within CSW01_03865 at 797.052 kb on + strand, within CSW01_03865 at 797.055 kb on - strand, within CSW01_03865 at 797.055 kb on - strand, within CSW01_03865 at 797.183 kb on + strand, within CSW01_03865 at 797.246 kb on + strand, within CSW01_03865 at 797.254 kb on - strand, within CSW01_03865 at 797.270 kb on + strand, within CSW01_03865 at 797.278 kb on - strand, within CSW01_03865 at 797.278 kb on - strand, within CSW01_03865 at 797.278 kb on - strand, within CSW01_03865 at 797.330 kb on + strand at 797.375 kb on + strand at 797.389 kb on - strand at 797.466 kb on + strand at 797.474 kb on - strand at 797.756 kb on + strand, within CSW01_03870 at 797.972 kb on - strand, within CSW01_03870 at 797.980 kb on + strand, within CSW01_03870 at 798.106 kb on + strand, within CSW01_03870 at 798.201 kb on - strand, within CSW01_03870
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep2 remove 795,530 - CSW01_03860 0.51 +1.4 795,530 - CSW01_03860 0.51 +1.1 795,556 - CSW01_03860 0.52 -0.8 795,608 + CSW01_03860 0.55 +2.0 795,610 + CSW01_03860 0.55 +2.4 795,618 - CSW01_03860 0.56 +0.1 795,655 - CSW01_03860 0.58 -0.7 795,733 + CSW01_03860 0.62 +0.7 795,736 - CSW01_03860 0.62 +1.2 795,854 + CSW01_03860 0.68 -0.0 795,854 + CSW01_03860 0.68 -0.6 795,862 - CSW01_03860 0.69 -1.0 795,873 - CSW01_03860 0.69 -0.4 795,909 + CSW01_03860 0.71 +0.2 795,917 - CSW01_03860 0.72 -0.9 795,917 - CSW01_03860 0.72 -1.0 795,950 + CSW01_03860 0.74 -1.7 795,960 + CSW01_03860 0.74 +0.1 795,988 + CSW01_03860 0.76 -2.8 796,091 + CSW01_03860 0.81 -2.8 796,091 + CSW01_03860 0.81 +0.7 796,099 - CSW01_03860 0.82 +1.9 796,099 - CSW01_03860 0.82 +0.1 796,189 - CSW01_03860 0.87 -2.1 796,225 - CSW01_03860 0.88 +0.8 796,236 - CSW01_03860 0.89 -1.2 796,250 - CSW01_03860 0.90 +0.3 796,320 - +0.5 796,361 - -2.7 796,415 + +0.8 796,580 - CSW01_03865 0.13 +0.8 796,624 - CSW01_03865 0.18 +0.4 796,712 + CSW01_03865 0.27 -0.8 796,741 + CSW01_03865 0.30 +1.5 796,981 + CSW01_03865 0.56 -1.1 797,000 - CSW01_03865 0.58 +0.4 797,045 + CSW01_03865 0.62 +0.4 797,047 + CSW01_03865 0.63 +0.8 797,047 + CSW01_03865 0.63 +1.0 797,052 + CSW01_03865 0.63 -1.3 797,052 + CSW01_03865 0.63 -1.2 797,055 - CSW01_03865 0.64 +0.7 797,055 - CSW01_03865 0.64 -3.5 797,183 + CSW01_03865 0.77 -3.5 797,246 + CSW01_03865 0.84 +1.3 797,254 - CSW01_03865 0.84 -0.8 797,270 + CSW01_03865 0.86 -1.0 797,278 - CSW01_03865 0.87 +0.3 797,278 - CSW01_03865 0.87 +0.9 797,278 - CSW01_03865 0.87 +1.3 797,330 + +1.1 797,375 + +1.6 797,389 - +1.9 797,466 + +0.2 797,474 - +0.1 797,756 + CSW01_03870 0.23 +1.0 797,972 - CSW01_03870 0.50 -0.2 797,980 + CSW01_03870 0.51 -0.4 798,106 + CSW01_03870 0.67 -0.2 798,201 - CSW01_03870 0.79 +1.3
Or see this region's nucleotide sequence