Experiment: ICP1_phage_235.3_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_03620 and CSW01_03625 are separated by 26 nucleotides CSW01_03625 and CSW01_03630 are separated by 9 nucleotides
CSW01_03620: CSW01_03620 - beta-hexosaminidase, at 738,618 to 739,610
_03620
CSW01_03625: CSW01_03625 - DNA-binding response regulator, at 739,637 to 740,350
_03625
CSW01_03630: CSW01_03630 - sensor histidine kinase, at 740,360 to 742,036
_03630
Position (kb) 739
740
741 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 738.639 kb on - strand at 738.639 kb on - strand at 738.685 kb on + strand at 738.685 kb on + strand at 738.690 kb on + strand at 738.693 kb on - strand at 738.727 kb on + strand, within CSW01_03620 at 738.856 kb on - strand, within CSW01_03620 at 738.863 kb on + strand, within CSW01_03620 at 738.863 kb on + strand, within CSW01_03620 at 738.863 kb on + strand, within CSW01_03620 at 738.866 kb on - strand, within CSW01_03620 at 738.870 kb on - strand, within CSW01_03620 at 738.871 kb on - strand, within CSW01_03620 at 738.871 kb on - strand, within CSW01_03620 at 738.876 kb on + strand, within CSW01_03620 at 738.886 kb on + strand, within CSW01_03620 at 738.908 kb on - strand, within CSW01_03620 at 738.908 kb on - strand, within CSW01_03620 at 738.966 kb on + strand, within CSW01_03620 at 738.978 kb on + strand, within CSW01_03620 at 739.046 kb on - strand, within CSW01_03620 at 739.091 kb on + strand, within CSW01_03620 at 739.168 kb on - strand, within CSW01_03620 at 739.213 kb on - strand, within CSW01_03620 at 739.284 kb on - strand, within CSW01_03620 at 739.296 kb on - strand, within CSW01_03620 at 739.401 kb on + strand, within CSW01_03620 at 739.474 kb on - strand, within CSW01_03620 at 739.498 kb on + strand, within CSW01_03620 at 739.554 kb on - strand at 739.636 kb on - strand at 739.674 kb on - strand at 739.693 kb on + strand at 739.694 kb on + strand at 739.694 kb on + strand at 739.702 kb on - strand at 739.770 kb on + strand, within CSW01_03625 at 739.918 kb on + strand, within CSW01_03625 at 739.928 kb on + strand, within CSW01_03625 at 739.936 kb on - strand, within CSW01_03625 at 739.936 kb on - strand, within CSW01_03625 at 739.936 kb on - strand, within CSW01_03625 at 739.936 kb on - strand, within CSW01_03625 at 739.936 kb on - strand, within CSW01_03625 at 739.936 kb on - strand, within CSW01_03625 at 739.946 kb on + strand, within CSW01_03625 at 739.951 kb on + strand, within CSW01_03625 at 739.951 kb on + strand, within CSW01_03625 at 739.951 kb on + strand, within CSW01_03625 at 739.951 kb on + strand, within CSW01_03625 at 739.951 kb on + strand, within CSW01_03625 at 739.956 kb on + strand, within CSW01_03625 at 739.956 kb on + strand, within CSW01_03625 at 739.959 kb on - strand, within CSW01_03625 at 739.959 kb on - strand, within CSW01_03625 at 739.962 kb on + strand, within CSW01_03625 at 739.972 kb on + strand, within CSW01_03625 at 739.975 kb on - strand, within CSW01_03625 at 740.046 kb on + strand, within CSW01_03625 at 740.046 kb on + strand, within CSW01_03625 at 740.054 kb on - strand, within CSW01_03625 at 740.074 kb on + strand, within CSW01_03625 at 740.111 kb on + strand, within CSW01_03625 at 740.122 kb on + strand, within CSW01_03625 at 740.129 kb on - strand, within CSW01_03625 at 740.130 kb on - strand, within CSW01_03625 at 740.135 kb on - strand, within CSW01_03625 at 740.216 kb on - strand, within CSW01_03625 at 740.216 kb on - strand, within CSW01_03625 at 740.312 kb on + strand at 740.320 kb on - strand at 740.341 kb on - strand at 740.348 kb on + strand at 740.351 kb on + strand at 740.415 kb on - strand at 740.418 kb on + strand at 740.418 kb on + strand at 740.426 kb on - strand at 740.431 kb on + strand at 740.571 kb on + strand, within CSW01_03630 at 740.602 kb on + strand, within CSW01_03630 at 740.602 kb on + strand, within CSW01_03630 at 740.602 kb on + strand, within CSW01_03630 at 740.602 kb on + strand, within CSW01_03630 at 740.602 kb on + strand, within CSW01_03630 at 740.602 kb on + strand, within CSW01_03630 at 740.610 kb on - strand, within CSW01_03630 at 740.610 kb on - strand, within CSW01_03630 at 740.610 kb on - strand, within CSW01_03630 at 740.610 kb on - strand, within CSW01_03630 at 740.610 kb on - strand, within CSW01_03630 at 740.610 kb on - strand, within CSW01_03630 at 740.610 kb on - strand, within CSW01_03630 at 740.610 kb on - strand, within CSW01_03630 at 740.610 kb on - strand, within CSW01_03630 at 740.677 kb on + strand, within CSW01_03630 at 740.756 kb on + strand, within CSW01_03630 at 740.761 kb on + strand, within CSW01_03630 at 740.794 kb on + strand, within CSW01_03630 at 740.866 kb on + strand, within CSW01_03630 at 740.885 kb on - strand, within CSW01_03630 at 740.928 kb on + strand, within CSW01_03630 at 741.011 kb on + strand, within CSW01_03630 at 741.014 kb on - strand, within CSW01_03630 at 741.019 kb on - strand, within CSW01_03630 at 741.065 kb on + strand, within CSW01_03630 at 741.118 kb on - strand, within CSW01_03630 at 741.142 kb on - strand, within CSW01_03630 at 741.177 kb on + strand, within CSW01_03630 at 741.216 kb on - strand, within CSW01_03630 at 741.241 kb on + strand, within CSW01_03630 at 741.265 kb on + strand, within CSW01_03630 at 741.268 kb on - strand, within CSW01_03630 at 741.304 kb on - strand, within CSW01_03630 at 741.322 kb on + strand, within CSW01_03630
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep2 remove 738,639 - +0.1 738,639 - +0.8 738,685 + -2.1 738,685 + +1.0 738,690 + -0.4 738,693 - -0.2 738,727 + CSW01_03620 0.11 +1.8 738,856 - CSW01_03620 0.24 +0.3 738,863 + CSW01_03620 0.25 -2.9 738,863 + CSW01_03620 0.25 +1.2 738,863 + CSW01_03620 0.25 -3.5 738,866 - CSW01_03620 0.25 -2.8 738,870 - CSW01_03620 0.25 -2.6 738,871 - CSW01_03620 0.25 -0.1 738,871 - CSW01_03620 0.25 +0.1 738,876 + CSW01_03620 0.26 +0.1 738,886 + CSW01_03620 0.27 +1.3 738,908 - CSW01_03620 0.29 -2.6 738,908 - CSW01_03620 0.29 +1.7 738,966 + CSW01_03620 0.35 -1.7 738,978 + CSW01_03620 0.36 +1.7 739,046 - CSW01_03620 0.43 -3.1 739,091 + CSW01_03620 0.48 +0.4 739,168 - CSW01_03620 0.55 +3.0 739,213 - CSW01_03620 0.60 +2.2 739,284 - CSW01_03620 0.67 +1.7 739,296 - CSW01_03620 0.68 -1.6 739,401 + CSW01_03620 0.79 -0.4 739,474 - CSW01_03620 0.86 +1.2 739,498 + CSW01_03620 0.89 +0.1 739,554 - -2.1 739,636 - -0.1 739,674 - -0.6 739,693 + -0.7 739,694 + +0.7 739,694 + -0.2 739,702 - +0.6 739,770 + CSW01_03625 0.19 +0.1 739,918 + CSW01_03625 0.39 -0.2 739,928 + CSW01_03625 0.41 -2.0 739,936 - CSW01_03625 0.42 +0.5 739,936 - CSW01_03625 0.42 -0.9 739,936 - CSW01_03625 0.42 -0.1 739,936 - CSW01_03625 0.42 -2.2 739,936 - CSW01_03625 0.42 +1.2 739,936 - CSW01_03625 0.42 +1.1 739,946 + CSW01_03625 0.43 +0.4 739,951 + CSW01_03625 0.44 +0.7 739,951 + CSW01_03625 0.44 -3.5 739,951 + CSW01_03625 0.44 +1.2 739,951 + CSW01_03625 0.44 +0.3 739,951 + CSW01_03625 0.44 -0.6 739,956 + CSW01_03625 0.45 -1.1 739,956 + CSW01_03625 0.45 +0.3 739,959 - CSW01_03625 0.45 +1.7 739,959 - CSW01_03625 0.45 +0.7 739,962 + CSW01_03625 0.46 -0.4 739,972 + CSW01_03625 0.47 +0.2 739,975 - CSW01_03625 0.47 -0.8 740,046 + CSW01_03625 0.57 +0.5 740,046 + CSW01_03625 0.57 -0.6 740,054 - CSW01_03625 0.58 +0.4 740,074 + CSW01_03625 0.61 -0.8 740,111 + CSW01_03625 0.66 -2.0 740,122 + CSW01_03625 0.68 -1.1 740,129 - CSW01_03625 0.69 +0.2 740,130 - CSW01_03625 0.69 -2.8 740,135 - CSW01_03625 0.70 +0.4 740,216 - CSW01_03625 0.81 -0.2 740,216 - CSW01_03625 0.81 +0.2 740,312 + -0.5 740,320 - +1.1 740,341 - +0.8 740,348 + -1.7 740,351 + +0.9 740,415 - -0.6 740,418 + +0.2 740,418 + -0.6 740,426 - +1.2 740,431 + +0.3 740,571 + CSW01_03630 0.13 +0.0 740,602 + CSW01_03630 0.14 -3.8 740,602 + CSW01_03630 0.14 +1.2 740,602 + CSW01_03630 0.14 +0.1 740,602 + CSW01_03630 0.14 +1.0 740,602 + CSW01_03630 0.14 +0.4 740,602 + CSW01_03630 0.14 +1.5 740,610 - CSW01_03630 0.15 -0.7 740,610 - CSW01_03630 0.15 +0.5 740,610 - CSW01_03630 0.15 +0.7 740,610 - CSW01_03630 0.15 +0.4 740,610 - CSW01_03630 0.15 -3.1 740,610 - CSW01_03630 0.15 -0.3 740,610 - CSW01_03630 0.15 -1.1 740,610 - CSW01_03630 0.15 +1.0 740,610 - CSW01_03630 0.15 -0.4 740,677 + CSW01_03630 0.19 +1.0 740,756 + CSW01_03630 0.24 -1.5 740,761 + CSW01_03630 0.24 +0.9 740,794 + CSW01_03630 0.26 +0.3 740,866 + CSW01_03630 0.30 -2.1 740,885 - CSW01_03630 0.31 +2.1 740,928 + CSW01_03630 0.34 -4.2 741,011 + CSW01_03630 0.39 -2.6 741,014 - CSW01_03630 0.39 -0.3 741,019 - CSW01_03630 0.39 +0.7 741,065 + CSW01_03630 0.42 +1.4 741,118 - CSW01_03630 0.45 -1.8 741,142 - CSW01_03630 0.47 +0.1 741,177 + CSW01_03630 0.49 -0.1 741,216 - CSW01_03630 0.51 +1.5 741,241 + CSW01_03630 0.53 +0.3 741,265 + CSW01_03630 0.54 -1.4 741,268 - CSW01_03630 0.54 -0.3 741,304 - CSW01_03630 0.56 -2.1 741,322 + CSW01_03630 0.57 +1.4
Or see this region's nucleotide sequence