Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03595

Experiment: ICP1_phage_235.3_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03590 and CSW01_03595 are separated by 136 nucleotidesCSW01_03595 and CSW01_03600 are separated by 252 nucleotidesCSW01_03600 and CSW01_03605 are separated by 15 nucleotides CSW01_03590: CSW01_03590 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 731,455 to 732,405 _03590 CSW01_03595: CSW01_03595 - carbon starvation protein A, at 732,542 to 734,026 _03595 CSW01_03600: CSW01_03600 - DUF2799 domain-containing protein, at 734,279 to 734,620 _03600 CSW01_03605: CSW01_03605 - sodium:proton antiporter, at 734,636 to 736,435 _03605 Position (kb) 732 733 734 735Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 732.568 kb on - strandat 732.596 kb on + strandat 732.604 kb on - strandat 732.626 kb on + strandat 732.626 kb on + strandat 732.633 kb on + strandat 732.639 kb on + strandat 732.701 kb on + strand, within CSW01_03595at 732.704 kb on + strand, within CSW01_03595at 732.717 kb on - strand, within CSW01_03595at 732.727 kb on - strand, within CSW01_03595at 732.727 kb on - strand, within CSW01_03595at 732.732 kb on + strand, within CSW01_03595at 732.732 kb on + strand, within CSW01_03595at 732.732 kb on + strand, within CSW01_03595at 732.732 kb on + strand, within CSW01_03595at 732.732 kb on + strand, within CSW01_03595at 732.740 kb on - strand, within CSW01_03595at 732.740 kb on - strand, within CSW01_03595at 732.740 kb on - strand, within CSW01_03595at 732.740 kb on - strand, within CSW01_03595at 732.740 kb on - strand, within CSW01_03595at 732.753 kb on + strand, within CSW01_03595at 732.756 kb on - strand, within CSW01_03595at 732.875 kb on + strand, within CSW01_03595at 732.875 kb on + strand, within CSW01_03595at 732.875 kb on + strand, within CSW01_03595at 732.875 kb on + strand, within CSW01_03595at 732.880 kb on + strand, within CSW01_03595at 732.880 kb on + strand, within CSW01_03595at 732.883 kb on + strand, within CSW01_03595at 732.888 kb on - strand, within CSW01_03595at 732.888 kb on - strand, within CSW01_03595at 732.909 kb on + strand, within CSW01_03595at 732.931 kb on + strand, within CSW01_03595at 732.953 kb on - strand, within CSW01_03595at 733.118 kb on - strand, within CSW01_03595at 733.147 kb on + strand, within CSW01_03595at 733.163 kb on - strand, within CSW01_03595at 733.166 kb on - strand, within CSW01_03595at 733.176 kb on - strand, within CSW01_03595at 733.296 kb on + strand, within CSW01_03595at 733.304 kb on - strand, within CSW01_03595at 733.368 kb on - strand, within CSW01_03595at 733.375 kb on + strand, within CSW01_03595at 733.392 kb on - strand, within CSW01_03595at 733.409 kb on + strand, within CSW01_03595at 733.409 kb on + strand, within CSW01_03595at 733.570 kb on + strand, within CSW01_03595at 733.616 kb on - strand, within CSW01_03595at 733.674 kb on - strand, within CSW01_03595at 733.696 kb on - strand, within CSW01_03595at 733.723 kb on + strand, within CSW01_03595at 733.728 kb on + strand, within CSW01_03595at 733.728 kb on + strand, within CSW01_03595at 733.784 kb on - strand, within CSW01_03595at 733.809 kb on + strand, within CSW01_03595at 733.839 kb on - strand, within CSW01_03595at 733.891 kb on - strandat 734.017 kb on - strandat 734.018 kb on - strandat 734.177 kb on - strandat 734.230 kb on - strandat 734.268 kb on - strandat 734.304 kb on + strandat 734.304 kb on + strandat 734.304 kb on + strandat 734.304 kb on + strandat 734.304 kb on + strandat 734.304 kb on + strandat 734.312 kb on - strandat 734.312 kb on - strandat 734.312 kb on - strandat 734.312 kb on - strandat 734.312 kb on - strandat 734.312 kb on - strandat 734.356 kb on - strand, within CSW01_03600at 734.397 kb on + strand, within CSW01_03600at 734.397 kb on + strand, within CSW01_03600at 734.397 kb on + strand, within CSW01_03600at 734.397 kb on + strand, within CSW01_03600at 734.397 kb on + strand, within CSW01_03600at 734.397 kb on + strand, within CSW01_03600at 734.397 kb on + strand, within CSW01_03600at 734.397 kb on + strand, within CSW01_03600at 734.402 kb on + strand, within CSW01_03600at 734.405 kb on + strand, within CSW01_03600at 734.405 kb on - strand, within CSW01_03600at 734.405 kb on - strand, within CSW01_03600at 734.405 kb on - strand, within CSW01_03600at 734.405 kb on - strand, within CSW01_03600at 734.405 kb on - strand, within CSW01_03600at 734.405 kb on - strand, within CSW01_03600at 734.405 kb on - strand, within CSW01_03600at 734.405 kb on - strand, within CSW01_03600at 734.405 kb on - strand, within CSW01_03600at 734.405 kb on - strand, within CSW01_03600at 734.405 kb on - strand, within CSW01_03600at 734.421 kb on + strand, within CSW01_03600at 734.429 kb on - strand, within CSW01_03600at 734.556 kb on + strand, within CSW01_03600at 734.556 kb on + strand, within CSW01_03600at 734.556 kb on + strand, within CSW01_03600at 734.564 kb on - strand, within CSW01_03600at 734.564 kb on - strand, within CSW01_03600at 734.564 kb on - strand, within CSW01_03600at 734.587 kb on - strandat 734.621 kb on + strandat 734.665 kb on - strandat 734.665 kb on - strandat 734.665 kb on - strandat 734.675 kb on - strandat 734.803 kb on - strandat 734.868 kb on + strand, within CSW01_03605at 734.884 kb on + strand, within CSW01_03605at 734.896 kb on + strand, within CSW01_03605at 734.896 kb on + strand, within CSW01_03605at 734.896 kb on + strand, within CSW01_03605at 734.898 kb on + strand, within CSW01_03605at 734.904 kb on - strand, within CSW01_03605at 734.904 kb on - strand, within CSW01_03605at 734.904 kb on - strand, within CSW01_03605at 734.904 kb on - strand, within CSW01_03605at 734.904 kb on - strand, within CSW01_03605at 734.906 kb on - strand, within CSW01_03605at 734.914 kb on - strand, within CSW01_03605at 734.914 kb on - strand, within CSW01_03605at 734.914 kb on - strand, within CSW01_03605at 734.914 kb on - strand, within CSW01_03605at 734.982 kb on - strand, within CSW01_03605at 735.020 kb on - strand, within CSW01_03605

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep2
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732,568 - +0.6
732,596 + -1.8
732,604 - -0.9
732,626 + +0.9
732,626 + -2.1
732,633 + +1.5
732,639 + -3.7
732,701 + CSW01_03595 0.11 +0.1
732,704 + CSW01_03595 0.11 -2.5
732,717 - CSW01_03595 0.12 -1.4
732,727 - CSW01_03595 0.12 -0.5
732,727 - CSW01_03595 0.12 -1.9
732,732 + CSW01_03595 0.13 +1.8
732,732 + CSW01_03595 0.13 +1.4
732,732 + CSW01_03595 0.13 -0.6
732,732 + CSW01_03595 0.13 +0.4
732,732 + CSW01_03595 0.13 -0.3
732,740 - CSW01_03595 0.13 -0.0
732,740 - CSW01_03595 0.13 -3.2
732,740 - CSW01_03595 0.13 -2.0
732,740 - CSW01_03595 0.13 -0.7
732,740 - CSW01_03595 0.13 +1.0
732,753 + CSW01_03595 0.14 -0.1
732,756 - CSW01_03595 0.14 +1.2
732,875 + CSW01_03595 0.22 -0.9
732,875 + CSW01_03595 0.22 +0.6
732,875 + CSW01_03595 0.22 -4.0
732,875 + CSW01_03595 0.22 +0.3
732,880 + CSW01_03595 0.23 +2.1
732,880 + CSW01_03595 0.23 +1.2
732,883 + CSW01_03595 0.23 +1.1
732,888 - CSW01_03595 0.23 +0.1
732,888 - CSW01_03595 0.23 +0.5
732,909 + CSW01_03595 0.25 -0.7
732,931 + CSW01_03595 0.26 -0.3
732,953 - CSW01_03595 0.28 -3.9
733,118 - CSW01_03595 0.39 +0.5
733,147 + CSW01_03595 0.41 +0.9
733,163 - CSW01_03595 0.42 -0.3
733,166 - CSW01_03595 0.42 -1.7
733,176 - CSW01_03595 0.43 +0.2
733,296 + CSW01_03595 0.51 +1.7
733,304 - CSW01_03595 0.51 -0.2
733,368 - CSW01_03595 0.56 +0.2
733,375 + CSW01_03595 0.56 -0.7
733,392 - CSW01_03595 0.57 +0.4
733,409 + CSW01_03595 0.58 -2.7
733,409 + CSW01_03595 0.58 -3.2
733,570 + CSW01_03595 0.69 +0.0
733,616 - CSW01_03595 0.72 +0.7
733,674 - CSW01_03595 0.76 +1.2
733,696 - CSW01_03595 0.78 -1.5
733,723 + CSW01_03595 0.80 -1.0
733,728 + CSW01_03595 0.80 +0.7
733,728 + CSW01_03595 0.80 -1.7
733,784 - CSW01_03595 0.84 +0.9
733,809 + CSW01_03595 0.85 +1.0
733,839 - CSW01_03595 0.87 -0.1
733,891 - +2.1
734,017 - -4.5
734,018 - -0.3
734,177 - -0.7
734,230 - +0.5
734,268 - +0.1
734,304 + +3.1
734,304 + +1.9
734,304 + +0.6
734,304 + -0.2
734,304 + -3.2
734,304 + -3.5
734,312 - +1.3
734,312 - -0.8
734,312 - +1.1
734,312 - -0.0
734,312 - -2.1
734,312 - +2.0
734,356 - CSW01_03600 0.23 +0.2
734,397 + CSW01_03600 0.35 +1.2
734,397 + CSW01_03600 0.35 -1.2
734,397 + CSW01_03600 0.35 +2.1
734,397 + CSW01_03600 0.35 +0.9
734,397 + CSW01_03600 0.35 -2.2
734,397 + CSW01_03600 0.35 -0.0
734,397 + CSW01_03600 0.35 +0.1
734,397 + CSW01_03600 0.35 -2.6
734,402 + CSW01_03600 0.36 +1.2
734,405 + CSW01_03600 0.37 +1.0
734,405 - CSW01_03600 0.37 -0.1
734,405 - CSW01_03600 0.37 +0.1
734,405 - CSW01_03600 0.37 +0.3
734,405 - CSW01_03600 0.37 +0.5
734,405 - CSW01_03600 0.37 -0.8
734,405 - CSW01_03600 0.37 -1.0
734,405 - CSW01_03600 0.37 -0.2
734,405 - CSW01_03600 0.37 +1.0
734,405 - CSW01_03600 0.37 -1.2
734,405 - CSW01_03600 0.37 +1.3
734,405 - CSW01_03600 0.37 +0.9
734,421 + CSW01_03600 0.42 -0.1
734,429 - CSW01_03600 0.44 +0.8
734,556 + CSW01_03600 0.81 +0.7
734,556 + CSW01_03600 0.81 +0.8
734,556 + CSW01_03600 0.81 -0.3
734,564 - CSW01_03600 0.83 +2.1
734,564 - CSW01_03600 0.83 +0.6
734,564 - CSW01_03600 0.83 -0.3
734,587 - -3.2
734,621 + -0.1
734,665 - -1.6
734,665 - +1.1
734,665 - -1.1
734,675 - +1.3
734,803 - +0.8
734,868 + CSW01_03605 0.13 +1.4
734,884 + CSW01_03605 0.14 +1.3
734,896 + CSW01_03605 0.14 -1.5
734,896 + CSW01_03605 0.14 +0.9
734,896 + CSW01_03605 0.14 +1.5
734,898 + CSW01_03605 0.15 +1.1
734,904 - CSW01_03605 0.15 -1.5
734,904 - CSW01_03605 0.15 +0.8
734,904 - CSW01_03605 0.15 +0.6
734,904 - CSW01_03605 0.15 -2.4
734,904 - CSW01_03605 0.15 +0.7
734,906 - CSW01_03605 0.15 +1.3
734,914 - CSW01_03605 0.15 -2.0
734,914 - CSW01_03605 0.15 +0.8
734,914 - CSW01_03605 0.15 -1.7
734,914 - CSW01_03605 0.15 +0.4
734,982 - CSW01_03605 0.19 +0.8
735,020 - CSW01_03605 0.21 +1.3

Or see this region's nucleotide sequence