Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03530

Experiment: ICP1_phage_235.3_MOI_rep2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_03525 and CSW01_03530 are separated by 9 nucleotidesCSW01_03530 and CSW01_03535 are separated by 28 nucleotidesCSW01_03535 and CSW01_03540 are separated by 9 nucleotides CSW01_03525: CSW01_03525 - phosphoenolpyruvate-protein phosphotransferase PtsP, at 716,408 to 718,654 _03525 CSW01_03530: CSW01_03530 - sulfite exporter TauE/SafE family protein, at 718,664 to 719,458 _03530 CSW01_03535: CSW01_03535 - prolipoprotein diacylglyceryl transferase, at 719,487 to 720,302 _03535 CSW01_03540: CSW01_03540 - thymidylate synthase, at 720,312 to 721,163 _03540 Position (kb) 718 719 720Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 717.669 kb on - strand, within CSW01_03525at 717.685 kb on + strand, within CSW01_03525at 717.695 kb on - strand, within CSW01_03525at 717.758 kb on - strand, within CSW01_03525at 717.782 kb on + strand, within CSW01_03525at 717.782 kb on + strand, within CSW01_03525at 717.785 kb on - strand, within CSW01_03525at 717.790 kb on - strand, within CSW01_03525at 717.839 kb on - strand, within CSW01_03525at 717.842 kb on - strand, within CSW01_03525at 717.863 kb on + strand, within CSW01_03525at 717.863 kb on + strand, within CSW01_03525at 717.865 kb on + strand, within CSW01_03525at 717.871 kb on + strand, within CSW01_03525at 717.873 kb on - strand, within CSW01_03525at 717.873 kb on - strand, within CSW01_03525at 717.873 kb on - strand, within CSW01_03525at 717.873 kb on - strand, within CSW01_03525at 717.873 kb on - strand, within CSW01_03525at 717.879 kb on - strand, within CSW01_03525at 717.879 kb on - strand, within CSW01_03525at 717.925 kb on + strand, within CSW01_03525at 717.933 kb on - strand, within CSW01_03525at 717.933 kb on - strand, within CSW01_03525at 718.033 kb on + strand, within CSW01_03525at 718.044 kb on + strand, within CSW01_03525at 718.046 kb on - strand, within CSW01_03525at 718.099 kb on + strand, within CSW01_03525at 718.134 kb on + strand, within CSW01_03525at 718.208 kb on - strand, within CSW01_03525at 718.272 kb on + strand, within CSW01_03525at 718.321 kb on + strand, within CSW01_03525at 718.345 kb on + strand, within CSW01_03525at 718.347 kb on + strand, within CSW01_03525at 718.353 kb on - strand, within CSW01_03525at 718.375 kb on - strand, within CSW01_03525at 718.451 kb on + strandat 718.452 kb on + strandat 718.459 kb on - strandat 718.459 kb on - strandat 718.460 kb on - strandat 718.467 kb on + strandat 718.482 kb on + strandat 718.518 kb on + strandat 718.518 kb on + strandat 718.518 kb on + strandat 718.526 kb on - strandat 718.526 kb on - strandat 718.533 kb on + strandat 718.555 kb on + strandat 718.569 kb on - strandat 718.628 kb on - strandat 718.683 kb on - strandat 718.701 kb on + strandat 718.754 kb on - strand, within CSW01_03530at 718.763 kb on + strand, within CSW01_03530at 718.780 kb on + strand, within CSW01_03530at 718.825 kb on + strand, within CSW01_03530at 718.862 kb on - strand, within CSW01_03530at 718.868 kb on + strand, within CSW01_03530at 718.878 kb on + strand, within CSW01_03530at 718.885 kb on + strand, within CSW01_03530at 718.886 kb on - strand, within CSW01_03530at 718.946 kb on + strand, within CSW01_03530at 719.005 kb on - strand, within CSW01_03530at 719.012 kb on - strand, within CSW01_03530at 719.017 kb on + strand, within CSW01_03530at 719.017 kb on + strand, within CSW01_03530at 719.017 kb on + strand, within CSW01_03530at 719.019 kb on + strand, within CSW01_03530at 719.025 kb on - strand, within CSW01_03530at 719.030 kb on + strand, within CSW01_03530at 719.032 kb on + strand, within CSW01_03530at 719.083 kb on + strand, within CSW01_03530at 719.084 kb on - strand, within CSW01_03530at 719.116 kb on + strand, within CSW01_03530at 719.133 kb on + strand, within CSW01_03530at 719.265 kb on + strand, within CSW01_03530at 719.281 kb on - strand, within CSW01_03530at 719.281 kb on - strand, within CSW01_03530at 719.281 kb on - strand, within CSW01_03530at 719.293 kb on - strand, within CSW01_03530at 719.391 kb on + strandat 719.452 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep2
remove
717,669 - CSW01_03525 0.56 +0.8
717,685 + CSW01_03525 0.57 +0.6
717,695 - CSW01_03525 0.57 -2.1
717,758 - CSW01_03525 0.60 -0.0
717,782 + CSW01_03525 0.61 -0.9
717,782 + CSW01_03525 0.61 -2.0
717,785 - CSW01_03525 0.61 -2.1
717,790 - CSW01_03525 0.62 +0.8
717,839 - CSW01_03525 0.64 -3.0
717,842 - CSW01_03525 0.64 -1.9
717,863 + CSW01_03525 0.65 +2.2
717,863 + CSW01_03525 0.65 +1.4
717,865 + CSW01_03525 0.65 -2.2
717,871 + CSW01_03525 0.65 +0.5
717,873 - CSW01_03525 0.65 -0.1
717,873 - CSW01_03525 0.65 -1.3
717,873 - CSW01_03525 0.65 -1.2
717,873 - CSW01_03525 0.65 -0.4
717,873 - CSW01_03525 0.65 +1.1
717,879 - CSW01_03525 0.65 -0.3
717,879 - CSW01_03525 0.65 +0.7
717,925 + CSW01_03525 0.68 +1.0
717,933 - CSW01_03525 0.68 -3.8
717,933 - CSW01_03525 0.68 -3.4
718,033 + CSW01_03525 0.72 -1.3
718,044 + CSW01_03525 0.73 +0.4
718,046 - CSW01_03525 0.73 +0.5
718,099 + CSW01_03525 0.75 +0.5
718,134 + CSW01_03525 0.77 -1.0
718,208 - CSW01_03525 0.80 +0.9
718,272 + CSW01_03525 0.83 +0.8
718,321 + CSW01_03525 0.85 -1.5
718,345 + CSW01_03525 0.86 -0.5
718,347 + CSW01_03525 0.86 -1.2
718,353 - CSW01_03525 0.87 +0.2
718,375 - CSW01_03525 0.88 +1.4
718,451 + +0.0
718,452 + -1.3
718,459 - -0.1
718,459 - -2.4
718,460 - +0.4
718,467 + -0.3
718,482 + +0.3
718,518 + +1.0
718,518 + -0.4
718,518 + +1.0
718,526 - -0.1
718,526 - -0.8
718,533 + +1.2
718,555 + +0.8
718,569 - -0.4
718,628 - -0.5
718,683 - +0.5
718,701 + +0.4
718,754 - CSW01_03530 0.11 -0.9
718,763 + CSW01_03530 0.12 -1.7
718,780 + CSW01_03530 0.15 -2.3
718,825 + CSW01_03530 0.20 -1.5
718,862 - CSW01_03530 0.25 -1.7
718,868 + CSW01_03530 0.26 -3.6
718,878 + CSW01_03530 0.27 -3.8
718,885 + CSW01_03530 0.28 +1.3
718,886 - CSW01_03530 0.28 -4.2
718,946 + CSW01_03530 0.35 -1.7
719,005 - CSW01_03530 0.43 -2.7
719,012 - CSW01_03530 0.44 -3.2
719,017 + CSW01_03530 0.44 -1.2
719,017 + CSW01_03530 0.44 +1.8
719,017 + CSW01_03530 0.44 -0.6
719,019 + CSW01_03530 0.45 -3.2
719,025 - CSW01_03530 0.45 +0.9
719,030 + CSW01_03530 0.46 +0.1
719,032 + CSW01_03530 0.46 +0.6
719,083 + CSW01_03530 0.53 +0.5
719,084 - CSW01_03530 0.53 +0.6
719,116 + CSW01_03530 0.57 -2.6
719,133 + CSW01_03530 0.59 -0.4
719,265 + CSW01_03530 0.76 +0.6
719,281 - CSW01_03530 0.78 +1.6
719,281 - CSW01_03530 0.78 -2.3
719,281 - CSW01_03530 0.78 +0.7
719,293 - CSW01_03530 0.79 -1.4
719,391 + -4.3
719,452 - -3.3

Or see this region's nucleotide sequence