Experiment: ICP1_phage_235.3_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_02875 and CSW01_02880 are separated by 132 nucleotides CSW01_02880 and CSW01_02885 are separated by 172 nucleotides
CSW01_02875: CSW01_02875 - DNA recombination/repair protein RecA, at 573,437 to 574,501
_02875
CSW01_02880: CSW01_02880 - regulatory protein RecX, at 574,634 to 575,092
_02880
CSW01_02885: CSW01_02885 - alanine--tRNA ligase, at 575,265 to 577,847
_02885
Position (kb) 574
575
576 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 573.691 kb on + strand, within CSW01_02875 at 573.692 kb on + strand, within CSW01_02875 at 573.692 kb on + strand, within CSW01_02875 at 573.692 kb on + strand, within CSW01_02875 at 573.700 kb on - strand, within CSW01_02875 at 573.700 kb on - strand, within CSW01_02875 at 573.832 kb on - strand, within CSW01_02875 at 573.835 kb on + strand, within CSW01_02875 at 573.843 kb on - strand, within CSW01_02875 at 573.857 kb on + strand, within CSW01_02875 at 573.965 kb on - strand, within CSW01_02875 at 573.993 kb on - strand, within CSW01_02875 at 574.111 kb on - strand, within CSW01_02875 at 574.203 kb on - strand, within CSW01_02875 at 574.232 kb on + strand, within CSW01_02875 at 574.232 kb on + strand, within CSW01_02875 at 574.232 kb on + strand, within CSW01_02875 at 574.232 kb on + strand, within CSW01_02875 at 574.240 kb on - strand, within CSW01_02875 at 574.255 kb on + strand, within CSW01_02875 at 574.260 kb on + strand, within CSW01_02875 at 574.268 kb on - strand, within CSW01_02875 at 574.308 kb on + strand, within CSW01_02875 at 574.414 kb on + strand at 574.495 kb on + strand at 574.523 kb on + strand at 574.592 kb on + strand at 574.637 kb on + strand at 574.638 kb on + strand at 574.676 kb on + strand at 574.676 kb on + strand at 574.786 kb on + strand, within CSW01_02880 at 574.817 kb on - strand, within CSW01_02880 at 574.848 kb on - strand, within CSW01_02880 at 574.848 kb on - strand, within CSW01_02880 at 574.848 kb on - strand, within CSW01_02880 at 574.850 kb on + strand, within CSW01_02880 at 574.863 kb on - strand, within CSW01_02880 at 574.926 kb on + strand, within CSW01_02880 at 574.945 kb on + strand, within CSW01_02880 at 575.030 kb on - strand, within CSW01_02880 at 575.051 kb on - strand at 575.066 kb on + strand at 575.075 kb on + strand at 575.083 kb on - strand at 575.096 kb on + strand at 575.104 kb on - strand at 575.142 kb on - strand at 575.189 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep2 remove 573,691 + CSW01_02875 0.24 -2.2 573,692 + CSW01_02875 0.24 -3.0 573,692 + CSW01_02875 0.24 -2.1 573,692 + CSW01_02875 0.24 -2.1 573,700 - CSW01_02875 0.25 -2.2 573,700 - CSW01_02875 0.25 -0.4 573,832 - CSW01_02875 0.37 -1.0 573,835 + CSW01_02875 0.37 -2.7 573,843 - CSW01_02875 0.38 -3.1 573,857 + CSW01_02875 0.39 -0.2 573,965 - CSW01_02875 0.50 +0.6 573,993 - CSW01_02875 0.52 -2.6 574,111 - CSW01_02875 0.63 -2.0 574,203 - CSW01_02875 0.72 -2.8 574,232 + CSW01_02875 0.75 -2.0 574,232 + CSW01_02875 0.75 -1.7 574,232 + CSW01_02875 0.75 -2.5 574,232 + CSW01_02875 0.75 -2.5 574,240 - CSW01_02875 0.75 +0.6 574,255 + CSW01_02875 0.77 -3.0 574,260 + CSW01_02875 0.77 -2.1 574,268 - CSW01_02875 0.78 -2.7 574,308 + CSW01_02875 0.82 -0.7 574,414 + +2.9 574,495 + +1.0 574,523 + +0.5 574,592 + +1.3 574,637 + +0.4 574,638 + -0.6 574,676 + -1.1 574,676 + -1.9 574,786 + CSW01_02880 0.33 +1.0 574,817 - CSW01_02880 0.40 -0.2 574,848 - CSW01_02880 0.47 +0.7 574,848 - CSW01_02880 0.47 +0.5 574,848 - CSW01_02880 0.47 +0.2 574,850 + CSW01_02880 0.47 +0.1 574,863 - CSW01_02880 0.50 +0.3 574,926 + CSW01_02880 0.64 -0.4 574,945 + CSW01_02880 0.68 +0.2 575,030 - CSW01_02880 0.86 +0.4 575,051 - -1.8 575,066 + -0.7 575,075 + -0.1 575,083 - -0.2 575,096 + +0.7 575,104 - -1.7 575,142 - +1.9 575,189 + -0.1
Or see this region's nucleotide sequence