Experiment: ICP1_phage_235.3_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_02840 and CSW01_02845 are separated by 267 nucleotides CSW01_02845 and CSW01_02850 are separated by 383 nucleotides
CSW01_02840: CSW01_02840 - DNA mismatch repair protein MutS, at 564,573 to 567,161
_02840
CSW01_02845: CSW01_02845 - cysteine synthase CysM, at 567,429 to 568,316
_02845
CSW01_02850: CSW01_02850 - sulfate ABC transporter substrate-binding protein, at 568,700 to 569,701
_02850
Position (kb) 567
568
569 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 566.476 kb on - strand, within CSW01_02840 at 566.556 kb on + strand, within CSW01_02840 at 566.564 kb on - strand, within CSW01_02840 at 566.695 kb on - strand, within CSW01_02840 at 566.780 kb on - strand, within CSW01_02840 at 566.818 kb on + strand, within CSW01_02840 at 566.818 kb on + strand, within CSW01_02840 at 566.818 kb on + strand, within CSW01_02840 at 566.826 kb on - strand, within CSW01_02840 at 566.826 kb on - strand, within CSW01_02840 at 566.828 kb on + strand, within CSW01_02840 at 566.914 kb on + strand at 566.957 kb on - strand at 566.999 kb on + strand at 566.999 kb on + strand at 566.999 kb on + strand at 566.999 kb on + strand at 567.007 kb on - strand at 567.007 kb on - strand at 567.007 kb on - strand at 567.022 kb on + strand at 567.065 kb on - strand at 567.107 kb on + strand at 567.133 kb on - strand at 567.190 kb on + strand at 567.198 kb on - strand at 567.204 kb on - strand at 567.241 kb on + strand at 567.249 kb on - strand at 567.267 kb on - strand at 567.277 kb on + strand at 567.282 kb on - strand at 567.300 kb on + strand at 567.300 kb on + strand at 567.307 kb on + strand at 567.307 kb on + strand at 567.307 kb on + strand at 567.307 kb on + strand at 567.307 kb on + strand at 567.315 kb on - strand at 567.315 kb on - strand at 567.315 kb on - strand at 567.315 kb on - strand at 567.317 kb on + strand at 567.354 kb on - strand at 567.360 kb on - strand at 567.379 kb on + strand at 567.402 kb on + strand at 567.478 kb on + strand at 567.547 kb on - strand, within CSW01_02845 at 567.582 kb on + strand, within CSW01_02845 at 567.582 kb on + strand, within CSW01_02845 at 567.712 kb on - strand, within CSW01_02845 at 567.735 kb on - strand, within CSW01_02845 at 567.874 kb on - strand, within CSW01_02845 at 567.879 kb on - strand, within CSW01_02845 at 567.879 kb on - strand, within CSW01_02845 at 567.906 kb on + strand, within CSW01_02845 at 567.927 kb on + strand, within CSW01_02845 at 567.957 kb on + strand, within CSW01_02845 at 567.965 kb on - strand, within CSW01_02845 at 567.965 kb on - strand, within CSW01_02845 at 567.965 kb on - strand, within CSW01_02845 at 567.991 kb on - strand, within CSW01_02845 at 568.002 kb on + strand, within CSW01_02845 at 568.010 kb on - strand, within CSW01_02845 at 568.019 kb on + strand, within CSW01_02845 at 568.019 kb on + strand, within CSW01_02845 at 568.061 kb on - strand, within CSW01_02845 at 568.075 kb on + strand, within CSW01_02845 at 568.088 kb on - strand, within CSW01_02845 at 568.141 kb on - strand, within CSW01_02845 at 568.180 kb on + strand, within CSW01_02845 at 568.180 kb on + strand, within CSW01_02845 at 568.180 kb on + strand, within CSW01_02845 at 568.188 kb on - strand, within CSW01_02845 at 568.188 kb on - strand, within CSW01_02845 at 568.232 kb on + strand at 568.241 kb on + strand at 568.246 kb on + strand at 568.246 kb on + strand at 568.254 kb on - strand at 568.274 kb on - strand at 568.292 kb on + strand at 568.292 kb on + strand at 568.298 kb on - strand at 568.300 kb on - strand at 568.300 kb on - strand at 568.308 kb on + strand at 568.318 kb on + strand at 568.365 kb on - strand at 568.441 kb on + strand at 568.474 kb on + strand at 568.567 kb on - strand at 568.653 kb on + strand at 568.653 kb on + strand at 568.653 kb on + strand at 568.800 kb on + strand at 568.818 kb on - strand, within CSW01_02850 at 568.818 kb on - strand, within CSW01_02850 at 568.818 kb on - strand, within CSW01_02850 at 568.832 kb on - strand, within CSW01_02850 at 568.880 kb on - strand, within CSW01_02850 at 568.880 kb on - strand, within CSW01_02850 at 568.909 kb on - strand, within CSW01_02850 at 568.919 kb on + strand, within CSW01_02850 at 568.988 kb on + strand, within CSW01_02850 at 569.087 kb on - strand, within CSW01_02850 at 569.158 kb on - strand, within CSW01_02850 at 569.183 kb on + strand, within CSW01_02850 at 569.183 kb on + strand, within CSW01_02850 at 569.183 kb on + strand, within CSW01_02850 at 569.183 kb on + strand, within CSW01_02850 at 569.191 kb on - strand, within CSW01_02850 at 569.191 kb on - strand, within CSW01_02850 at 569.215 kb on + strand, within CSW01_02850 at 569.215 kb on + strand, within CSW01_02850 at 569.223 kb on - strand, within CSW01_02850 at 569.223 kb on - strand, within CSW01_02850 at 569.223 kb on - strand, within CSW01_02850 at 569.228 kb on - strand, within CSW01_02850 at 569.280 kb on - strand, within CSW01_02850
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep2 remove 566,476 - CSW01_02840 0.74 +1.3 566,556 + CSW01_02840 0.77 -2.2 566,564 - CSW01_02840 0.77 -0.7 566,695 - CSW01_02840 0.82 +1.2 566,780 - CSW01_02840 0.85 +1.9 566,818 + CSW01_02840 0.87 +0.5 566,818 + CSW01_02840 0.87 +1.7 566,818 + CSW01_02840 0.87 +1.9 566,826 - CSW01_02840 0.87 -1.4 566,826 - CSW01_02840 0.87 -0.3 566,828 + CSW01_02840 0.87 -0.2 566,914 + -2.8 566,957 - -0.1 566,999 + -0.5 566,999 + -0.4 566,999 + -2.5 566,999 + +1.0 567,007 - -0.2 567,007 - +0.0 567,007 - -1.5 567,022 + -0.2 567,065 - -2.1 567,107 + +2.1 567,133 - -1.2 567,190 + -3.0 567,198 - +0.0 567,204 - +1.2 567,241 + +1.0 567,249 - +1.1 567,267 - -4.1 567,277 + +0.4 567,282 - +0.5 567,300 + +0.9 567,300 + -1.2 567,307 + -0.5 567,307 + +0.1 567,307 + +0.5 567,307 + -1.6 567,307 + -0.1 567,315 - +1.0 567,315 - -0.1 567,315 - -3.4 567,315 - +1.7 567,317 + +1.4 567,354 - -0.3 567,360 - +0.9 567,379 + -0.3 567,402 + -2.2 567,478 + -2.5 567,547 - CSW01_02845 0.13 -1.9 567,582 + CSW01_02845 0.17 -1.3 567,582 + CSW01_02845 0.17 +0.2 567,712 - CSW01_02845 0.32 -0.8 567,735 - CSW01_02845 0.34 -2.6 567,874 - CSW01_02845 0.50 +0.8 567,879 - CSW01_02845 0.51 -1.5 567,879 - CSW01_02845 0.51 +1.5 567,906 + CSW01_02845 0.54 +1.6 567,927 + CSW01_02845 0.56 -0.4 567,957 + CSW01_02845 0.59 +1.1 567,965 - CSW01_02845 0.60 +0.3 567,965 - CSW01_02845 0.60 -0.5 567,965 - CSW01_02845 0.60 -2.5 567,991 - CSW01_02845 0.63 -0.5 568,002 + CSW01_02845 0.65 -0.9 568,010 - CSW01_02845 0.65 +0.9 568,019 + CSW01_02845 0.66 -1.6 568,019 + CSW01_02845 0.66 -0.2 568,061 - CSW01_02845 0.71 +1.5 568,075 + CSW01_02845 0.73 +0.7 568,088 - CSW01_02845 0.74 +0.6 568,141 - CSW01_02845 0.80 +1.6 568,180 + CSW01_02845 0.85 +0.1 568,180 + CSW01_02845 0.85 +0.7 568,180 + CSW01_02845 0.85 +0.8 568,188 - CSW01_02845 0.85 +0.4 568,188 - CSW01_02845 0.85 +2.0 568,232 + +0.6 568,241 + +0.4 568,246 + -0.8 568,246 + -2.4 568,254 - -1.9 568,274 - +0.9 568,292 + +0.9 568,292 + +0.6 568,298 - -0.5 568,300 - -1.6 568,300 - -1.8 568,308 + -0.5 568,318 + -0.1 568,365 - -1.9 568,441 + -1.6 568,474 + +0.5 568,567 - -1.3 568,653 + -2.3 568,653 + -3.3 568,653 + +0.4 568,800 + -2.8 568,818 - CSW01_02850 0.12 -1.9 568,818 - CSW01_02850 0.12 +0.4 568,818 - CSW01_02850 0.12 -1.0 568,832 - CSW01_02850 0.13 -0.7 568,880 - CSW01_02850 0.18 -2.6 568,880 - CSW01_02850 0.18 -1.4 568,909 - CSW01_02850 0.21 -0.6 568,919 + CSW01_02850 0.22 +0.4 568,988 + CSW01_02850 0.29 +1.6 569,087 - CSW01_02850 0.39 +1.5 569,158 - CSW01_02850 0.46 +0.0 569,183 + CSW01_02850 0.48 -2.1 569,183 + CSW01_02850 0.48 +0.6 569,183 + CSW01_02850 0.48 -0.5 569,183 + CSW01_02850 0.48 +2.7 569,191 - CSW01_02850 0.49 +1.5 569,191 - CSW01_02850 0.49 +1.2 569,215 + CSW01_02850 0.51 -0.4 569,215 + CSW01_02850 0.51 +0.0 569,223 - CSW01_02850 0.52 +1.1 569,223 - CSW01_02850 0.52 -0.6 569,223 - CSW01_02850 0.52 -1.9 569,228 - CSW01_02850 0.53 +0.9 569,280 - CSW01_02850 0.58 +0.0
Or see this region's nucleotide sequence