Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02630

Experiment: ICP1_phage_235.3_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02620 and CSW01_02625 are separated by 61 nucleotidesCSW01_02625 and CSW01_02630 are separated by 53 nucleotidesCSW01_02630 and CSW01_02635 are separated by 63 nucleotidesCSW01_02635 and CSW01_02640 are separated by 81 nucleotidesCSW01_02640 and CSW01_02645 are separated by 80 nucleotides CSW01_02620: CSW01_02620 - inovirus Gp2 family protein, at 527,045 to 527,689 _02620 CSW01_02625: CSW01_02625 - inovirus Gp2 family protein, at 527,751 to 528,425 _02625 CSW01_02630: CSW01_02630 - inovirus Gp2 family protein, at 528,479 to 529,078 _02630 CSW01_02635: CSW01_02635 - AlpA family transcriptional regulator, at 529,142 to 529,342 _02635 CSW01_02640: CSW01_02640 - ribonuclease H, at 529,424 to 529,864 _02640 CSW01_02645: CSW01_02645 - IS3 family transposase, at 529,945 to 531,136 _02645 Position (kb) 528 529 530Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 527.480 kb on + strand, within CSW01_02620at 527.503 kb on - strand, within CSW01_02620at 527.511 kb on - strand, within CSW01_02620at 527.513 kb on + strand, within CSW01_02620at 527.571 kb on + strand, within CSW01_02620at 527.571 kb on + strand, within CSW01_02620at 527.571 kb on + strand, within CSW01_02620at 527.579 kb on - strand, within CSW01_02620at 527.579 kb on - strand, within CSW01_02620at 527.588 kb on - strand, within CSW01_02620at 527.593 kb on + strand, within CSW01_02620at 527.601 kb on - strand, within CSW01_02620at 527.601 kb on - strand, within CSW01_02620at 527.617 kb on + strand, within CSW01_02620at 527.625 kb on - strandat 527.679 kb on + strandat 527.687 kb on - strandat 527.702 kb on + strandat 527.755 kb on - strandat 527.775 kb on - strandat 527.792 kb on - strandat 527.828 kb on + strand, within CSW01_02625at 527.831 kb on - strand, within CSW01_02625at 527.831 kb on - strand, within CSW01_02625at 527.833 kb on + strand, within CSW01_02625at 527.841 kb on - strand, within CSW01_02625at 527.848 kb on - strand, within CSW01_02625at 527.853 kb on - strand, within CSW01_02625at 527.868 kb on - strand, within CSW01_02625at 527.868 kb on - strand, within CSW01_02625at 527.880 kb on + strand, within CSW01_02625at 527.931 kb on + strand, within CSW01_02625at 527.932 kb on + strand, within CSW01_02625at 527.935 kb on - strand, within CSW01_02625at 527.940 kb on - strand, within CSW01_02625at 527.973 kb on - strand, within CSW01_02625at 528.017 kb on + strand, within CSW01_02625at 528.017 kb on + strand, within CSW01_02625at 528.090 kb on - strand, within CSW01_02625at 528.139 kb on - strand, within CSW01_02625at 528.181 kb on - strand, within CSW01_02625at 528.182 kb on - strand, within CSW01_02625at 528.231 kb on + strand, within CSW01_02625at 528.250 kb on + strand, within CSW01_02625at 528.250 kb on + strand, within CSW01_02625at 528.255 kb on + strand, within CSW01_02625at 528.255 kb on + strand, within CSW01_02625at 528.255 kb on + strand, within CSW01_02625at 528.255 kb on + strand, within CSW01_02625at 528.255 kb on + strand, within CSW01_02625at 528.255 kb on + strand, within CSW01_02625at 528.256 kb on - strand, within CSW01_02625at 528.258 kb on - strand, within CSW01_02625at 528.263 kb on - strand, within CSW01_02625at 528.263 kb on - strand, within CSW01_02625at 528.263 kb on - strand, within CSW01_02625at 528.263 kb on - strand, within CSW01_02625at 528.283 kb on + strand, within CSW01_02625at 528.301 kb on + strand, within CSW01_02625at 528.370 kb on - strandat 528.390 kb on + strandat 528.405 kb on - strandat 528.469 kb on + strandat 528.469 kb on + strandat 528.470 kb on + strandat 528.470 kb on + strandat 528.470 kb on + strandat 528.470 kb on + strandat 528.470 kb on + strandat 528.478 kb on - strandat 528.478 kb on - strandat 528.478 kb on - strandat 528.478 kb on - strandat 528.478 kb on - strandat 528.478 kb on - strandat 528.478 kb on - strandat 528.478 kb on - strandat 528.478 kb on - strandat 528.478 kb on - strandat 528.481 kb on + strandat 528.489 kb on - strandat 528.492 kb on - strandat 528.504 kb on + strandat 528.512 kb on - strandat 528.541 kb on + strand, within CSW01_02630at 528.557 kb on - strand, within CSW01_02630at 528.612 kb on - strand, within CSW01_02630at 528.655 kb on + strand, within CSW01_02630at 528.677 kb on + strand, within CSW01_02630at 528.747 kb on - strand, within CSW01_02630at 528.759 kb on - strand, within CSW01_02630at 528.772 kb on - strand, within CSW01_02630at 528.779 kb on + strand, within CSW01_02630at 528.789 kb on + strand, within CSW01_02630at 528.854 kb on - strand, within CSW01_02630at 528.868 kb on + strand, within CSW01_02630at 528.878 kb on + strand, within CSW01_02630at 528.911 kb on + strand, within CSW01_02630at 528.911 kb on + strand, within CSW01_02630at 528.911 kb on + strand, within CSW01_02630at 528.911 kb on + strand, within CSW01_02630at 528.911 kb on + strand, within CSW01_02630at 528.912 kb on - strand, within CSW01_02630at 528.919 kb on - strand, within CSW01_02630at 528.919 kb on - strand, within CSW01_02630at 528.919 kb on - strand, within CSW01_02630at 528.919 kb on - strand, within CSW01_02630at 528.919 kb on - strand, within CSW01_02630at 528.919 kb on - strand, within CSW01_02630at 529.004 kb on + strand, within CSW01_02630at 529.012 kb on - strand, within CSW01_02630at 529.013 kb on + strand, within CSW01_02630at 529.026 kb on - strandat 529.068 kb on + strandat 529.076 kb on - strandat 529.076 kb on - strandat 529.080 kb on - strandat 529.094 kb on + strandat 529.099 kb on + strandat 529.181 kb on + strand, within CSW01_02635at 529.181 kb on + strand, within CSW01_02635at 529.181 kb on + strand, within CSW01_02635at 529.181 kb on + strand, within CSW01_02635at 529.181 kb on + strand, within CSW01_02635at 529.181 kb on + strand, within CSW01_02635at 529.181 kb on + strand, within CSW01_02635at 529.181 kb on + strand, within CSW01_02635at 529.181 kb on + strand, within CSW01_02635at 529.181 kb on + strand, within CSW01_02635at 529.181 kb on + strand, within CSW01_02635at 529.181 kb on + strand, within CSW01_02635at 529.181 kb on + strand, within CSW01_02635at 529.189 kb on - strand, within CSW01_02635at 529.189 kb on - strand, within CSW01_02635at 529.189 kb on - strand, within CSW01_02635at 529.189 kb on - strand, within CSW01_02635at 529.189 kb on - strand, within CSW01_02635at 529.189 kb on - strand, within CSW01_02635at 529.189 kb on - strand, within CSW01_02635at 529.189 kb on - strand, within CSW01_02635at 529.189 kb on - strand, within CSW01_02635at 529.189 kb on - strand, within CSW01_02635at 529.189 kb on - strand, within CSW01_02635at 529.215 kb on - strand, within CSW01_02635at 529.332 kb on + strandat 529.449 kb on + strandat 529.457 kb on - strandat 529.476 kb on - strand, within CSW01_02640at 529.481 kb on - strand, within CSW01_02640at 529.493 kb on - strand, within CSW01_02640at 529.516 kb on - strand, within CSW01_02640at 529.535 kb on - strand, within CSW01_02640at 529.545 kb on - strand, within CSW01_02640at 529.574 kb on - strand, within CSW01_02640at 529.588 kb on - strand, within CSW01_02640at 529.598 kb on + strand, within CSW01_02640at 529.598 kb on + strand, within CSW01_02640at 529.650 kb on - strand, within CSW01_02640at 529.688 kb on + strand, within CSW01_02640at 529.688 kb on + strand, within CSW01_02640at 529.694 kb on + strand, within CSW01_02640at 529.702 kb on - strand, within CSW01_02640at 529.761 kb on + strand, within CSW01_02640at 529.824 kb on - strandat 529.887 kb on + strandat 529.896 kb on - strandat 529.932 kb on - strandat 529.996 kb on + strandat 530.015 kb on + strandat 530.015 kb on + strandat 530.030 kb on + strandat 530.038 kb on - strandat 530.044 kb on + strandat 530.048 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep2
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527,480 + CSW01_02620 0.67 -4.7
527,503 - CSW01_02620 0.71 -1.0
527,511 - CSW01_02620 0.72 +0.6
527,513 + CSW01_02620 0.73 -1.6
527,571 + CSW01_02620 0.82 -1.4
527,571 + CSW01_02620 0.82 +1.1
527,571 + CSW01_02620 0.82 -3.5
527,579 - CSW01_02620 0.83 +1.7
527,579 - CSW01_02620 0.83 -2.0
527,588 - CSW01_02620 0.84 +0.4
527,593 + CSW01_02620 0.85 -0.0
527,601 - CSW01_02620 0.86 +0.9
527,601 - CSW01_02620 0.86 +0.7
527,617 + CSW01_02620 0.89 +1.8
527,625 - -2.5
527,679 + -2.8
527,687 - -0.7
527,702 + +0.8
527,755 - -0.1
527,775 - +1.6
527,792 - +0.8
527,828 + CSW01_02625 0.11 +1.2
527,831 - CSW01_02625 0.12 +1.6
527,831 - CSW01_02625 0.12 -2.5
527,833 + CSW01_02625 0.12 +0.8
527,841 - CSW01_02625 0.13 -1.1
527,848 - CSW01_02625 0.14 -0.0
527,853 - CSW01_02625 0.15 -1.6
527,868 - CSW01_02625 0.17 +0.3
527,868 - CSW01_02625 0.17 +1.0
527,880 + CSW01_02625 0.19 +0.9
527,931 + CSW01_02625 0.27 +0.8
527,932 + CSW01_02625 0.27 +1.0
527,935 - CSW01_02625 0.27 +0.9
527,940 - CSW01_02625 0.28 +0.2
527,973 - CSW01_02625 0.33 -0.3
528,017 + CSW01_02625 0.39 -2.2
528,017 + CSW01_02625 0.39 +0.9
528,090 - CSW01_02625 0.50 +0.2
528,139 - CSW01_02625 0.57 -0.9
528,181 - CSW01_02625 0.64 +0.2
528,182 - CSW01_02625 0.64 -0.0
528,231 + CSW01_02625 0.71 -2.2
528,250 + CSW01_02625 0.74 +0.8
528,250 + CSW01_02625 0.74 -2.8
528,255 + CSW01_02625 0.75 -0.4
528,255 + CSW01_02625 0.75 -0.3
528,255 + CSW01_02625 0.75 -0.0
528,255 + CSW01_02625 0.75 +0.3
528,255 + CSW01_02625 0.75 -0.2
528,255 + CSW01_02625 0.75 +0.1
528,256 - CSW01_02625 0.75 -0.1
528,258 - CSW01_02625 0.75 -2.7
528,263 - CSW01_02625 0.76 -3.0
528,263 - CSW01_02625 0.76 +1.1
528,263 - CSW01_02625 0.76 +1.8
528,263 - CSW01_02625 0.76 +0.1
528,283 + CSW01_02625 0.79 +0.7
528,301 + CSW01_02625 0.81 -2.0
528,370 - -2.3
528,390 + +0.6
528,405 - -0.5
528,469 + +1.1
528,469 + +0.9
528,470 + +0.9
528,470 + +0.4
528,470 + +0.2
528,470 + +1.4
528,470 + -3.0
528,478 - +0.9
528,478 - -2.7
528,478 - -1.5
528,478 - +1.0
528,478 - -1.3
528,478 - -2.9
528,478 - -1.2
528,478 - +0.9
528,478 - -2.4
528,478 - +0.1
528,481 + +1.0
528,489 - -0.2
528,492 - -2.1
528,504 + -0.7
528,512 - +1.0
528,541 + CSW01_02630 0.10 +0.6
528,557 - CSW01_02630 0.13 -4.7
528,612 - CSW01_02630 0.22 -0.4
528,655 + CSW01_02630 0.29 -0.5
528,677 + CSW01_02630 0.33 +0.3
528,747 - CSW01_02630 0.45 +0.6
528,759 - CSW01_02630 0.47 +1.3
528,772 - CSW01_02630 0.49 -0.5
528,779 + CSW01_02630 0.50 -0.3
528,789 + CSW01_02630 0.52 +1.1
528,854 - CSW01_02630 0.62 -0.2
528,868 + CSW01_02630 0.65 +0.3
528,878 + CSW01_02630 0.67 +0.0
528,911 + CSW01_02630 0.72 +0.6
528,911 + CSW01_02630 0.72 +1.2
528,911 + CSW01_02630 0.72 -0.9
528,911 + CSW01_02630 0.72 -1.0
528,911 + CSW01_02630 0.72 -0.4
528,912 - CSW01_02630 0.72 -0.9
528,919 - CSW01_02630 0.73 +0.7
528,919 - CSW01_02630 0.73 -2.7
528,919 - CSW01_02630 0.73 +0.7
528,919 - CSW01_02630 0.73 +0.2
528,919 - CSW01_02630 0.73 -0.3
528,919 - CSW01_02630 0.73 -1.7
529,004 + CSW01_02630 0.88 -0.6
529,012 - CSW01_02630 0.89 +0.2
529,013 + CSW01_02630 0.89 -1.3
529,026 - -0.1
529,068 + -0.4
529,076 - -0.2
529,076 - +0.5
529,080 - +0.5
529,094 + -0.3
529,099 + +1.5
529,181 + CSW01_02635 0.19 +0.0
529,181 + CSW01_02635 0.19 -3.3
529,181 + CSW01_02635 0.19 -1.1
529,181 + CSW01_02635 0.19 -0.9
529,181 + CSW01_02635 0.19 +0.3
529,181 + CSW01_02635 0.19 +1.1
529,181 + CSW01_02635 0.19 +0.7
529,181 + CSW01_02635 0.19 +0.8
529,181 + CSW01_02635 0.19 +0.4
529,181 + CSW01_02635 0.19 +0.4
529,181 + CSW01_02635 0.19 +0.1
529,181 + CSW01_02635 0.19 -0.2
529,181 + CSW01_02635 0.19 -1.6
529,189 - CSW01_02635 0.23 +1.0
529,189 - CSW01_02635 0.23 +0.3
529,189 - CSW01_02635 0.23 -0.7
529,189 - CSW01_02635 0.23 -0.1
529,189 - CSW01_02635 0.23 +0.5
529,189 - CSW01_02635 0.23 -0.5
529,189 - CSW01_02635 0.23 -2.7
529,189 - CSW01_02635 0.23 +0.3
529,189 - CSW01_02635 0.23 -1.1
529,189 - CSW01_02635 0.23 -3.1
529,189 - CSW01_02635 0.23 -0.6
529,215 - CSW01_02635 0.36 -1.4
529,332 + +1.2
529,449 + -0.5
529,457 - +0.1
529,476 - CSW01_02640 0.12 -1.5
529,481 - CSW01_02640 0.13 +0.4
529,493 - CSW01_02640 0.16 -3.9
529,516 - CSW01_02640 0.21 -0.0
529,535 - CSW01_02640 0.25 -0.2
529,545 - CSW01_02640 0.27 +2.6
529,574 - CSW01_02640 0.34 +2.0
529,588 - CSW01_02640 0.37 -1.8
529,598 + CSW01_02640 0.39 +0.4
529,598 + CSW01_02640 0.39 -0.3
529,650 - CSW01_02640 0.51 +0.6
529,688 + CSW01_02640 0.60 -3.6
529,688 + CSW01_02640 0.60 -0.1
529,694 + CSW01_02640 0.61 +0.0
529,702 - CSW01_02640 0.63 -2.3
529,761 + CSW01_02640 0.76 -0.1
529,824 - +0.6
529,887 + +0.3
529,896 - -1.4
529,932 - +1.3
529,996 + -3.1
530,015 + +0.1
530,015 + +0.1
530,030 + +0.2
530,038 - +0.5
530,044 + -2.8
530,048 - +0.4

Or see this region's nucleotide sequence