Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02310

Experiment: ICP1_phage_235.3_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02300 and CSW01_02305 overlap by 13 nucleotidesCSW01_02305 and CSW01_02310 are separated by 12 nucleotidesCSW01_02310 and CSW01_02315 are separated by 148 nucleotidesCSW01_02315 and CSW01_02320 are separated by 10 nucleotides CSW01_02300: CSW01_02300 - hypothetical protein, at 467,191 to 468,060 _02300 CSW01_02305: CSW01_02305 - hypothetical protein, at 468,048 to 468,533 _02305 CSW01_02310: CSW01_02310 - type 3 dihydrofolate reductase, at 468,546 to 469,043 _02310 CSW01_02315: CSW01_02315 - bis(5'-nucleosyl)-tetraphosphatase (symmetrical), at 469,192 to 470,001 _02315 CSW01_02320: CSW01_02320 - Co2+/Mg2+ efflux protein ApaG, at 470,012 to 470,392 _02320 Position (kb) 468 469 470Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 467.594 kb on + strand, within CSW01_02300at 467.594 kb on + strand, within CSW01_02300at 467.602 kb on - strand, within CSW01_02300at 467.624 kb on + strand, within CSW01_02300at 467.632 kb on - strand, within CSW01_02300at 467.632 kb on - strand, within CSW01_02300at 467.668 kb on - strand, within CSW01_02300at 467.688 kb on - strand, within CSW01_02300at 467.688 kb on - strand, within CSW01_02300at 467.704 kb on + strand, within CSW01_02300at 467.893 kb on + strand, within CSW01_02300at 467.922 kb on + strand, within CSW01_02300at 467.943 kb on + strand, within CSW01_02300at 467.951 kb on - strand, within CSW01_02300at 468.007 kb on - strandat 468.097 kb on - strand, within CSW01_02305at 468.174 kb on + strand, within CSW01_02305at 468.181 kb on + strand, within CSW01_02305at 468.239 kb on - strand, within CSW01_02305at 468.328 kb on - strand, within CSW01_02305at 469.232 kb on + strandat 469.237 kb on + strandat 469.272 kb on - strandat 469.300 kb on + strand, within CSW01_02315at 469.393 kb on - strand, within CSW01_02315at 469.473 kb on - strand, within CSW01_02315at 469.502 kb on - strand, within CSW01_02315at 469.503 kb on + strand, within CSW01_02315at 469.528 kb on + strand, within CSW01_02315at 469.528 kb on + strand, within CSW01_02315at 469.536 kb on - strand, within CSW01_02315at 469.538 kb on + strand, within CSW01_02315at 469.538 kb on + strand, within CSW01_02315at 469.538 kb on + strand, within CSW01_02315at 469.538 kb on + strand, within CSW01_02315at 469.538 kb on + strand, within CSW01_02315at 469.538 kb on + strand, within CSW01_02315at 469.538 kb on + strand, within CSW01_02315at 469.538 kb on + strand, within CSW01_02315at 469.538 kb on + strand, within CSW01_02315at 469.538 kb on + strand, within CSW01_02315at 469.546 kb on - strand, within CSW01_02315at 469.546 kb on - strand, within CSW01_02315at 469.546 kb on - strand, within CSW01_02315at 469.546 kb on - strand, within CSW01_02315at 469.546 kb on - strand, within CSW01_02315at 469.546 kb on - strand, within CSW01_02315at 469.546 kb on - strand, within CSW01_02315at 469.546 kb on - strand, within CSW01_02315at 469.551 kb on + strand, within CSW01_02315at 469.566 kb on + strand, within CSW01_02315at 469.576 kb on + strand, within CSW01_02315at 469.581 kb on + strand, within CSW01_02315at 469.589 kb on - strand, within CSW01_02315at 469.594 kb on + strand, within CSW01_02315at 469.654 kb on - strand, within CSW01_02315at 469.656 kb on + strand, within CSW01_02315at 469.659 kb on - strand, within CSW01_02315at 469.671 kb on - strand, within CSW01_02315at 469.687 kb on + strand, within CSW01_02315at 469.758 kb on + strand, within CSW01_02315at 469.766 kb on - strand, within CSW01_02315at 469.797 kb on - strand, within CSW01_02315at 469.842 kb on - strand, within CSW01_02315at 469.910 kb on + strand, within CSW01_02315at 469.977 kb on - strandat 469.977 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep2
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467,594 + CSW01_02300 0.46 +1.3
467,594 + CSW01_02300 0.46 +0.6
467,602 - CSW01_02300 0.47 +0.6
467,624 + CSW01_02300 0.50 -0.1
467,632 - CSW01_02300 0.51 -2.3
467,632 - CSW01_02300 0.51 -2.6
467,668 - CSW01_02300 0.55 -0.0
467,688 - CSW01_02300 0.57 +0.1
467,688 - CSW01_02300 0.57 +0.4
467,704 + CSW01_02300 0.59 +0.9
467,893 + CSW01_02300 0.81 -0.0
467,922 + CSW01_02300 0.84 +0.2
467,943 + CSW01_02300 0.86 -2.0
467,951 - CSW01_02300 0.87 -3.1
468,007 - +3.5
468,097 - CSW01_02305 0.10 +1.2
468,174 + CSW01_02305 0.26 -1.6
468,181 + CSW01_02305 0.27 +0.4
468,239 - CSW01_02305 0.39 -0.1
468,328 - CSW01_02305 0.58 +0.4
469,232 + -1.5
469,237 + +0.1
469,272 - -2.3
469,300 + CSW01_02315 0.13 -3.9
469,393 - CSW01_02315 0.25 +2.2
469,473 - CSW01_02315 0.35 -3.5
469,502 - CSW01_02315 0.38 -4.3
469,503 + CSW01_02315 0.38 +0.9
469,528 + CSW01_02315 0.41 +0.1
469,528 + CSW01_02315 0.41 -0.3
469,536 - CSW01_02315 0.42 -2.3
469,538 + CSW01_02315 0.43 -1.9
469,538 + CSW01_02315 0.43 -3.5
469,538 + CSW01_02315 0.43 +0.7
469,538 + CSW01_02315 0.43 +1.1
469,538 + CSW01_02315 0.43 +0.3
469,538 + CSW01_02315 0.43 -1.7
469,538 + CSW01_02315 0.43 -1.9
469,538 + CSW01_02315 0.43 -0.9
469,538 + CSW01_02315 0.43 -1.8
469,538 + CSW01_02315 0.43 +0.3
469,546 - CSW01_02315 0.44 +0.9
469,546 - CSW01_02315 0.44 +0.5
469,546 - CSW01_02315 0.44 -0.2
469,546 - CSW01_02315 0.44 +0.7
469,546 - CSW01_02315 0.44 -1.0
469,546 - CSW01_02315 0.44 -1.0
469,546 - CSW01_02315 0.44 +0.4
469,546 - CSW01_02315 0.44 +1.1
469,551 + CSW01_02315 0.44 -0.3
469,566 + CSW01_02315 0.46 +0.7
469,576 + CSW01_02315 0.47 -1.0
469,581 + CSW01_02315 0.48 +0.6
469,589 - CSW01_02315 0.49 -0.5
469,594 + CSW01_02315 0.50 +0.3
469,654 - CSW01_02315 0.57 -2.9
469,656 + CSW01_02315 0.57 -2.5
469,659 - CSW01_02315 0.58 -2.9
469,671 - CSW01_02315 0.59 +1.0
469,687 + CSW01_02315 0.61 +1.9
469,758 + CSW01_02315 0.70 -3.4
469,766 - CSW01_02315 0.71 -3.4
469,797 - CSW01_02315 0.75 -1.0
469,842 - CSW01_02315 0.80 -2.0
469,910 + CSW01_02315 0.89 -2.8
469,977 - +0.5
469,977 - +1.6

Or see this region's nucleotide sequence