Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02145

Experiment: ICP1_phage_235.3_MOI_rep2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_02140 and CSW01_02145 are separated by 2 nucleotidesCSW01_02145 and CSW01_02150 are separated by 80 nucleotidesCSW01_02150 and CSW01_02155 are separated by 25 nucleotides CSW01_02140: CSW01_02140 - type II secretion system F family protein, at 431,851 to 433,074 _02140 CSW01_02145: CSW01_02145 - MSHA biogenesis protein MshF, at 433,077 to 433,529 _02145 CSW01_02150: CSW01_02150 - MSHA biogenesis protein MshB, at 433,610 to 434,164 _02150 CSW01_02155: CSW01_02155 - MSHA pilin protein MshA, at 434,190 to 434,726 _02155 Position (kb) 433 434Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 432.100 kb on - strand, within CSW01_02140at 432.130 kb on + strand, within CSW01_02140at 432.130 kb on + strand, within CSW01_02140at 432.130 kb on + strand, within CSW01_02140at 432.130 kb on + strand, within CSW01_02140at 432.130 kb on + strand, within CSW01_02140at 432.130 kb on + strand, within CSW01_02140at 432.130 kb on + strand, within CSW01_02140at 432.130 kb on + strand, within CSW01_02140at 432.130 kb on + strand, within CSW01_02140at 432.130 kb on + strand, within CSW01_02140at 432.138 kb on - strand, within CSW01_02140at 432.138 kb on - strand, within CSW01_02140at 432.138 kb on - strand, within CSW01_02140at 432.138 kb on - strand, within CSW01_02140at 432.138 kb on - strand, within CSW01_02140at 432.138 kb on - strand, within CSW01_02140at 432.138 kb on - strand, within CSW01_02140at 432.138 kb on - strand, within CSW01_02140at 432.153 kb on + strand, within CSW01_02140at 432.153 kb on + strand, within CSW01_02140at 432.153 kb on + strand, within CSW01_02140at 432.153 kb on + strand, within CSW01_02140at 432.153 kb on + strand, within CSW01_02140at 432.153 kb on + strand, within CSW01_02140at 432.153 kb on + strand, within CSW01_02140at 432.153 kb on + strand, within CSW01_02140at 432.161 kb on - strand, within CSW01_02140at 432.161 kb on - strand, within CSW01_02140at 432.161 kb on - strand, within CSW01_02140at 432.161 kb on - strand, within CSW01_02140at 432.161 kb on - strand, within CSW01_02140at 432.161 kb on - strand, within CSW01_02140at 432.161 kb on - strand, within CSW01_02140at 432.161 kb on - strand, within CSW01_02140at 432.161 kb on - strand, within CSW01_02140at 432.161 kb on - strand, within CSW01_02140at 432.161 kb on - strand, within CSW01_02140at 432.161 kb on - strand, within CSW01_02140at 432.173 kb on - strand, within CSW01_02140at 432.179 kb on + strand, within CSW01_02140at 432.179 kb on + strand, within CSW01_02140at 432.179 kb on + strand, within CSW01_02140at 432.179 kb on + strand, within CSW01_02140at 432.179 kb on + strand, within CSW01_02140at 432.187 kb on - strand, within CSW01_02140at 432.187 kb on - strand, within CSW01_02140at 432.187 kb on - strand, within CSW01_02140at 432.215 kb on - strand, within CSW01_02140at 432.328 kb on + strand, within CSW01_02140at 432.420 kb on + strand, within CSW01_02140at 432.428 kb on - strand, within CSW01_02140at 432.469 kb on + strand, within CSW01_02140at 432.469 kb on + strand, within CSW01_02140at 432.469 kb on + strand, within CSW01_02140at 432.477 kb on - strand, within CSW01_02140at 432.477 kb on - strand, within CSW01_02140at 432.477 kb on - strand, within CSW01_02140at 432.477 kb on - strand, within CSW01_02140at 432.477 kb on - strand, within CSW01_02140at 432.477 kb on - strand, within CSW01_02140at 432.477 kb on - strand, within CSW01_02140at 432.477 kb on - strand, within CSW01_02140at 432.530 kb on - strand, within CSW01_02140at 432.530 kb on - strand, within CSW01_02140at 432.530 kb on - strand, within CSW01_02140at 432.553 kb on + strand, within CSW01_02140at 432.573 kb on + strand, within CSW01_02140at 432.579 kb on + strand, within CSW01_02140at 432.587 kb on - strand, within CSW01_02140at 432.637 kb on + strand, within CSW01_02140at 432.858 kb on - strand, within CSW01_02140at 432.859 kb on + strand, within CSW01_02140at 432.959 kb on + strandat 433.063 kb on + strandat 433.071 kb on - strandat 433.087 kb on + strandat 433.174 kb on + strand, within CSW01_02145at 433.177 kb on - strand, within CSW01_02145at 433.177 kb on - strand, within CSW01_02145at 433.179 kb on + strand, within CSW01_02145at 433.179 kb on + strand, within CSW01_02145at 433.187 kb on - strand, within CSW01_02145at 433.187 kb on - strand, within CSW01_02145at 433.191 kb on + strand, within CSW01_02145at 433.199 kb on - strand, within CSW01_02145at 433.234 kb on - strand, within CSW01_02145at 433.234 kb on - strand, within CSW01_02145at 433.264 kb on + strand, within CSW01_02145at 433.264 kb on + strand, within CSW01_02145at 433.282 kb on - strand, within CSW01_02145at 433.367 kb on + strand, within CSW01_02145at 433.372 kb on + strand, within CSW01_02145at 433.386 kb on + strand, within CSW01_02145at 433.386 kb on + strand, within CSW01_02145at 433.394 kb on - strand, within CSW01_02145at 433.394 kb on - strand, within CSW01_02145at 433.394 kb on - strand, within CSW01_02145at 433.413 kb on + strand, within CSW01_02145at 433.456 kb on + strand, within CSW01_02145at 433.456 kb on + strand, within CSW01_02145at 433.456 kb on + strand, within CSW01_02145at 433.464 kb on + strand, within CSW01_02145at 433.549 kb on + strandat 433.734 kb on + strand, within CSW01_02150at 433.863 kb on + strand, within CSW01_02150at 433.951 kb on - strand, within CSW01_02150at 433.952 kb on + strand, within CSW01_02150at 433.952 kb on + strand, within CSW01_02150at 433.952 kb on + strand, within CSW01_02150at 433.960 kb on - strand, within CSW01_02150at 433.965 kb on - strand, within CSW01_02150at 433.965 kb on - strand, within CSW01_02150at 433.965 kb on - strand, within CSW01_02150at 434.067 kb on + strand, within CSW01_02150at 434.090 kb on - strand, within CSW01_02150at 434.128 kb on + strandat 434.136 kb on - strandat 434.146 kb on - strandat 434.154 kb on + strandat 434.154 kb on - strandat 434.155 kb on - strandat 434.214 kb on + strandat 434.267 kb on + strand, within CSW01_02155at 434.302 kb on - strand, within CSW01_02155at 434.405 kb on - strand, within CSW01_02155at 434.412 kb on + strand, within CSW01_02155at 434.412 kb on + strand, within CSW01_02155at 434.433 kb on + strand, within CSW01_02155at 434.520 kb on - strand, within CSW01_02155at 434.526 kb on + strand, within CSW01_02155

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep2
remove
432,100 - CSW01_02140 0.20 -0.6
432,130 + CSW01_02140 0.23 +1.9
432,130 + CSW01_02140 0.23 -2.2
432,130 + CSW01_02140 0.23 +0.2
432,130 + CSW01_02140 0.23 -2.4
432,130 + CSW01_02140 0.23 -4.0
432,130 + CSW01_02140 0.23 +0.1
432,130 + CSW01_02140 0.23 -3.5
432,130 + CSW01_02140 0.23 +0.7
432,130 + CSW01_02140 0.23 +2.5
432,130 + CSW01_02140 0.23 -1.8
432,138 - CSW01_02140 0.23 +0.8
432,138 - CSW01_02140 0.23 -4.1
432,138 - CSW01_02140 0.23 -3.4
432,138 - CSW01_02140 0.23 +1.6
432,138 - CSW01_02140 0.23 +0.6
432,138 - CSW01_02140 0.23 -5.3
432,138 - CSW01_02140 0.23 -0.7
432,138 - CSW01_02140 0.23 -0.4
432,153 + CSW01_02140 0.25 +0.3
432,153 + CSW01_02140 0.25 -0.9
432,153 + CSW01_02140 0.25 -0.1
432,153 + CSW01_02140 0.25 -2.7
432,153 + CSW01_02140 0.25 -1.4
432,153 + CSW01_02140 0.25 -0.3
432,153 + CSW01_02140 0.25 -0.6
432,153 + CSW01_02140 0.25 -0.2
432,161 - CSW01_02140 0.25 -0.8
432,161 - CSW01_02140 0.25 -0.0
432,161 - CSW01_02140 0.25 +1.2
432,161 - CSW01_02140 0.25 -0.3
432,161 - CSW01_02140 0.25 -0.7
432,161 - CSW01_02140 0.25 -1.5
432,161 - CSW01_02140 0.25 +0.4
432,161 - CSW01_02140 0.25 +0.0
432,161 - CSW01_02140 0.25 -0.5
432,161 - CSW01_02140 0.25 -3.7
432,161 - CSW01_02140 0.25 -3.4
432,161 - CSW01_02140 0.25 -3.7
432,173 - CSW01_02140 0.26 +1.0
432,179 + CSW01_02140 0.27 -1.2
432,179 + CSW01_02140 0.27 -4.5
432,179 + CSW01_02140 0.27 +0.3
432,179 + CSW01_02140 0.27 -3.4
432,179 + CSW01_02140 0.27 -0.6
432,187 - CSW01_02140 0.27 -0.4
432,187 - CSW01_02140 0.27 +0.8
432,187 - CSW01_02140 0.27 -3.9
432,215 - CSW01_02140 0.30 -2.1
432,328 + CSW01_02140 0.39 +0.6
432,420 + CSW01_02140 0.46 +0.5
432,428 - CSW01_02140 0.47 +0.3
432,469 + CSW01_02140 0.50 +1.9
432,469 + CSW01_02140 0.50 -0.5
432,469 + CSW01_02140 0.50 +0.8
432,477 - CSW01_02140 0.51 +0.8
432,477 - CSW01_02140 0.51 -0.8
432,477 - CSW01_02140 0.51 -1.1
432,477 - CSW01_02140 0.51 -3.6
432,477 - CSW01_02140 0.51 -2.2
432,477 - CSW01_02140 0.51 -3.8
432,477 - CSW01_02140 0.51 +1.1
432,477 - CSW01_02140 0.51 -1.8
432,530 - CSW01_02140 0.55 +0.6
432,530 - CSW01_02140 0.55 -2.7
432,530 - CSW01_02140 0.55 +0.3
432,553 + CSW01_02140 0.57 -0.4
432,573 + CSW01_02140 0.59 -1.5
432,579 + CSW01_02140 0.59 -0.7
432,587 - CSW01_02140 0.60 -0.1
432,637 + CSW01_02140 0.64 -0.7
432,858 - CSW01_02140 0.82 +0.6
432,859 + CSW01_02140 0.82 +0.7
432,959 + -0.3
433,063 + +1.1
433,071 - -1.6
433,087 + +1.2
433,174 + CSW01_02145 0.21 +0.8
433,177 - CSW01_02145 0.22 -3.2
433,177 - CSW01_02145 0.22 +0.4
433,179 + CSW01_02145 0.23 -0.6
433,179 + CSW01_02145 0.23 -4.0
433,187 - CSW01_02145 0.24 +0.8
433,187 - CSW01_02145 0.24 -2.8
433,191 + CSW01_02145 0.25 -3.9
433,199 - CSW01_02145 0.27 -1.8
433,234 - CSW01_02145 0.35 +0.4
433,234 - CSW01_02145 0.35 +0.0
433,264 + CSW01_02145 0.41 +1.4
433,264 + CSW01_02145 0.41 +1.5
433,282 - CSW01_02145 0.45 +1.3
433,367 + CSW01_02145 0.64 +1.2
433,372 + CSW01_02145 0.65 +0.9
433,386 + CSW01_02145 0.68 -0.4
433,386 + CSW01_02145 0.68 +1.1
433,394 - CSW01_02145 0.70 -1.4
433,394 - CSW01_02145 0.70 -0.5
433,394 - CSW01_02145 0.70 +0.5
433,413 + CSW01_02145 0.74 -2.9
433,456 + CSW01_02145 0.84 -3.0
433,456 + CSW01_02145 0.84 -0.4
433,456 + CSW01_02145 0.84 +1.1
433,464 + CSW01_02145 0.85 +1.0
433,549 + +1.2
433,734 + CSW01_02150 0.22 +1.0
433,863 + CSW01_02150 0.46 +1.3
433,951 - CSW01_02150 0.61 -1.6
433,952 + CSW01_02150 0.62 +0.4
433,952 + CSW01_02150 0.62 +0.7
433,952 + CSW01_02150 0.62 +0.2
433,960 - CSW01_02150 0.63 -2.8
433,965 - CSW01_02150 0.64 -3.4
433,965 - CSW01_02150 0.64 -0.2
433,965 - CSW01_02150 0.64 -2.6
434,067 + CSW01_02150 0.82 -0.1
434,090 - CSW01_02150 0.86 -0.1
434,128 + +1.2
434,136 - -1.6
434,146 - -0.1
434,154 + +0.5
434,154 - -0.8
434,155 - -3.4
434,214 + -0.1
434,267 + CSW01_02155 0.14 -3.2
434,302 - CSW01_02155 0.21 +0.4
434,405 - CSW01_02155 0.40 -3.4
434,412 + CSW01_02155 0.41 -0.8
434,412 + CSW01_02155 0.41 +0.9
434,433 + CSW01_02155 0.45 +1.0
434,520 - CSW01_02155 0.61 -0.4
434,526 + CSW01_02155 0.63 +1.0

Or see this region's nucleotide sequence