Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02095

Experiment: ICP1_phage_235.3_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02090 and CSW01_02095 are separated by 291 nucleotidesCSW01_02095 and CSW01_02100 are separated by 114 nucleotides CSW01_02090: CSW01_02090 - helix-turn-helix transcriptional regulator, at 420,419 to 421,063 _02090 CSW01_02095: CSW01_02095 - ssDNA-binding protein, at 421,355 to 421,888 _02095 CSW01_02100: CSW01_02100 - RNase E specificity factor CsrD, at 422,003 to 424,024 _02100 Position (kb) 421 422Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 420.401 kb on + strandat 420.409 kb on - strandat 420.409 kb on - strandat 420.409 kb on - strandat 420.414 kb on - strandat 420.416 kb on - strandat 420.438 kb on + strandat 420.438 kb on + strandat 420.619 kb on + strand, within CSW01_02090at 420.642 kb on + strand, within CSW01_02090at 420.644 kb on - strand, within CSW01_02090at 420.694 kb on - strand, within CSW01_02090at 420.706 kb on + strand, within CSW01_02090at 420.706 kb on + strand, within CSW01_02090at 420.706 kb on + strand, within CSW01_02090at 420.706 kb on + strand, within CSW01_02090at 420.706 kb on + strand, within CSW01_02090at 420.706 kb on + strand, within CSW01_02090at 420.706 kb on + strand, within CSW01_02090at 420.706 kb on + strand, within CSW01_02090at 420.714 kb on - strand, within CSW01_02090at 420.714 kb on - strand, within CSW01_02090at 420.714 kb on - strand, within CSW01_02090at 420.714 kb on - strand, within CSW01_02090at 420.714 kb on - strand, within CSW01_02090at 420.714 kb on - strand, within CSW01_02090at 420.714 kb on - strand, within CSW01_02090at 420.714 kb on - strand, within CSW01_02090at 420.734 kb on + strand, within CSW01_02090at 420.743 kb on + strand, within CSW01_02090at 420.744 kb on + strand, within CSW01_02090at 420.752 kb on - strand, within CSW01_02090at 420.756 kb on + strand, within CSW01_02090at 420.756 kb on + strand, within CSW01_02090at 420.764 kb on - strand, within CSW01_02090at 420.764 kb on - strand, within CSW01_02090at 420.764 kb on - strand, within CSW01_02090at 420.764 kb on - strand, within CSW01_02090at 420.766 kb on + strand, within CSW01_02090at 420.844 kb on + strand, within CSW01_02090at 420.844 kb on + strand, within CSW01_02090at 420.844 kb on + strand, within CSW01_02090at 420.852 kb on - strand, within CSW01_02090at 420.852 kb on - strand, within CSW01_02090at 420.852 kb on - strand, within CSW01_02090at 420.852 kb on - strand, within CSW01_02090at 420.852 kb on - strand, within CSW01_02090at 420.852 kb on - strand, within CSW01_02090at 420.853 kb on - strand, within CSW01_02090at 420.932 kb on + strand, within CSW01_02090at 420.945 kb on + strand, within CSW01_02090at 420.976 kb on + strand, within CSW01_02090at 421.016 kb on - strandat 421.144 kb on + strandat 421.157 kb on + strandat 421.165 kb on - strandat 421.269 kb on - strandat 421.269 kb on - strandat 421.953 kb on + strandat 421.961 kb on + strandat 421.964 kb on - strandat 421.993 kb on + strandat 422.001 kb on - strandat 422.002 kb on - strandat 422.006 kb on + strandat 422.016 kb on + strandat 422.017 kb on + strandat 422.024 kb on - strandat 422.024 kb on - strandat 422.028 kb on + strandat 422.028 kb on + strandat 422.028 kb on + strandat 422.036 kb on - strandat 422.036 kb on - strandat 422.036 kb on - strandat 422.036 kb on - strandat 422.036 kb on - strandat 422.074 kb on + strandat 422.082 kb on - strandat 422.098 kb on - strandat 422.107 kb on + strandat 422.134 kb on + strandat 422.134 kb on + strandat 422.141 kb on - strandat 422.142 kb on - strandat 422.168 kb on - strandat 422.208 kb on + strand, within CSW01_02100at 422.208 kb on + strand, within CSW01_02100at 422.216 kb on - strand, within CSW01_02100at 422.221 kb on - strand, within CSW01_02100at 422.271 kb on + strand, within CSW01_02100at 422.309 kb on + strand, within CSW01_02100at 422.397 kb on + strand, within CSW01_02100at 422.426 kb on - strand, within CSW01_02100at 422.426 kb on - strand, within CSW01_02100at 422.453 kb on - strand, within CSW01_02100at 422.453 kb on - strand, within CSW01_02100at 422.453 kb on - strand, within CSW01_02100at 422.540 kb on - strand, within CSW01_02100at 422.615 kb on + strand, within CSW01_02100at 422.615 kb on + strand, within CSW01_02100at 422.615 kb on + strand, within CSW01_02100at 422.660 kb on - strand, within CSW01_02100at 422.742 kb on - strand, within CSW01_02100at 422.764 kb on + strand, within CSW01_02100at 422.802 kb on - strand, within CSW01_02100at 422.809 kb on + strand, within CSW01_02100at 422.809 kb on + strand, within CSW01_02100at 422.817 kb on - strand, within CSW01_02100at 422.840 kb on - strand, within CSW01_02100at 422.841 kb on - strand, within CSW01_02100at 422.867 kb on - strand, within CSW01_02100at 422.875 kb on + strand, within CSW01_02100at 422.886 kb on + strand, within CSW01_02100

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep2
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420,401 + +0.1
420,409 - +0.6
420,409 - +1.5
420,409 - -2.3
420,414 - -0.2
420,416 - +0.1
420,438 + +0.5
420,438 + -0.2
420,619 + CSW01_02090 0.31 -3.8
420,642 + CSW01_02090 0.35 -1.0
420,644 - CSW01_02090 0.35 -0.0
420,694 - CSW01_02090 0.43 -0.1
420,706 + CSW01_02090 0.44 -2.0
420,706 + CSW01_02090 0.44 +0.1
420,706 + CSW01_02090 0.44 -3.0
420,706 + CSW01_02090 0.44 +1.0
420,706 + CSW01_02090 0.44 -2.1
420,706 + CSW01_02090 0.44 +0.3
420,706 + CSW01_02090 0.44 -2.7
420,706 + CSW01_02090 0.44 -2.7
420,714 - CSW01_02090 0.46 -0.3
420,714 - CSW01_02090 0.46 -1.5
420,714 - CSW01_02090 0.46 +0.7
420,714 - CSW01_02090 0.46 -3.0
420,714 - CSW01_02090 0.46 +1.1
420,714 - CSW01_02090 0.46 -0.2
420,714 - CSW01_02090 0.46 +0.3
420,714 - CSW01_02090 0.46 -3.2
420,734 + CSW01_02090 0.49 +0.8
420,743 + CSW01_02090 0.50 -3.1
420,744 + CSW01_02090 0.50 -0.2
420,752 - CSW01_02090 0.52 +1.0
420,756 + CSW01_02090 0.52 +0.6
420,756 + CSW01_02090 0.52 -3.0
420,764 - CSW01_02090 0.53 -1.2
420,764 - CSW01_02090 0.53 -1.8
420,764 - CSW01_02090 0.53 -1.7
420,764 - CSW01_02090 0.53 +0.2
420,766 + CSW01_02090 0.54 +1.1
420,844 + CSW01_02090 0.66 -1.4
420,844 + CSW01_02090 0.66 -1.5
420,844 + CSW01_02090 0.66 -0.3
420,852 - CSW01_02090 0.67 -2.9
420,852 - CSW01_02090 0.67 -3.5
420,852 - CSW01_02090 0.67 +0.6
420,852 - CSW01_02090 0.67 +0.3
420,852 - CSW01_02090 0.67 -2.7
420,852 - CSW01_02090 0.67 -3.8
420,853 - CSW01_02090 0.67 -1.8
420,932 + CSW01_02090 0.80 -1.6
420,945 + CSW01_02090 0.82 +0.7
420,976 + CSW01_02090 0.86 -3.9
421,016 - +0.6
421,144 + -0.9
421,157 + +1.0
421,165 - -0.4
421,269 - -1.5
421,269 - +0.8
421,953 + -1.2
421,961 + -1.5
421,964 - -0.2
421,993 + +0.9
422,001 - -3.2
422,002 - -1.1
422,006 + -4.0
422,016 + -0.1
422,017 + +0.7
422,024 - -0.7
422,024 - -1.2
422,028 + -0.7
422,028 + -1.4
422,028 + +0.1
422,036 - -4.0
422,036 - -1.5
422,036 - +0.2
422,036 - -2.7
422,036 - +1.0
422,074 + -1.0
422,082 - -2.4
422,098 - -0.7
422,107 + +0.4
422,134 + +1.1
422,134 + -1.3
422,141 - -3.0
422,142 - +0.5
422,168 - +1.1
422,208 + CSW01_02100 0.10 +0.8
422,208 + CSW01_02100 0.10 +0.9
422,216 - CSW01_02100 0.11 +0.4
422,221 - CSW01_02100 0.11 +0.8
422,271 + CSW01_02100 0.13 +1.0
422,309 + CSW01_02100 0.15 +1.1
422,397 + CSW01_02100 0.19 +0.1
422,426 - CSW01_02100 0.21 -1.6
422,426 - CSW01_02100 0.21 -2.4
422,453 - CSW01_02100 0.22 -4.6
422,453 - CSW01_02100 0.22 -0.8
422,453 - CSW01_02100 0.22 -3.5
422,540 - CSW01_02100 0.27 -0.2
422,615 + CSW01_02100 0.30 -3.5
422,615 + CSW01_02100 0.30 -4.2
422,615 + CSW01_02100 0.30 -1.1
422,660 - CSW01_02100 0.32 -3.2
422,742 - CSW01_02100 0.37 -0.9
422,764 + CSW01_02100 0.38 -3.2
422,802 - CSW01_02100 0.40 -3.1
422,809 + CSW01_02100 0.40 -2.0
422,809 + CSW01_02100 0.40 +0.7
422,817 - CSW01_02100 0.40 +0.4
422,840 - CSW01_02100 0.41 -0.4
422,841 - CSW01_02100 0.41 +0.0
422,867 - CSW01_02100 0.43 -2.0
422,875 + CSW01_02100 0.43 -1.1
422,886 + CSW01_02100 0.44 -2.9

Or see this region's nucleotide sequence