Experiment: ICP1_phage_235.3_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_02065 and CSW01_02070 are separated by 463 nucleotides CSW01_02070 and CSW01_02075 are separated by 78 nucleotides
CSW01_02065: CSW01_02065 - lysine-sensitive aspartokinase 3, at 411,531 to 412,886
_02065
CSW01_02070: CSW01_02070 - alanine--glyoxylate aminotransferase family protein, at 413,350 to 414,468
_02070
CSW01_02075: CSW01_02075 - ligase, at 414,547 to 416,340
_02075
Position (kb) 413
414
415 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 412.433 kb on - strand, within CSW01_02065 at 412.441 kb on + strand, within CSW01_02065 at 412.443 kb on + strand, within CSW01_02065 at 412.451 kb on - strand, within CSW01_02065 at 412.459 kb on - strand, within CSW01_02065 at 412.492 kb on + strand, within CSW01_02065 at 412.508 kb on + strand, within CSW01_02065 at 412.529 kb on - strand, within CSW01_02065 at 412.566 kb on + strand, within CSW01_02065 at 412.615 kb on + strand, within CSW01_02065 at 412.709 kb on + strand, within CSW01_02065 at 412.709 kb on + strand, within CSW01_02065 at 412.715 kb on - strand, within CSW01_02065 at 412.715 kb on - strand, within CSW01_02065 at 412.757 kb on + strand at 412.757 kb on + strand at 412.757 kb on + strand at 412.757 kb on + strand at 412.757 kb on + strand at 412.757 kb on + strand at 412.757 kb on + strand at 412.757 kb on + strand at 412.757 kb on + strand at 412.757 kb on + strand at 412.757 kb on + strand at 412.757 kb on + strand at 412.757 kb on + strand at 412.757 kb on + strand at 412.757 kb on + strand at 412.757 kb on + strand at 412.757 kb on + strand at 412.757 kb on + strand at 412.757 kb on + strand at 412.757 kb on + strand at 412.765 kb on - strand at 412.765 kb on - strand at 412.765 kb on - strand at 412.765 kb on - strand at 412.765 kb on - strand at 412.765 kb on - strand at 412.765 kb on - strand at 412.765 kb on - strand at 412.765 kb on - strand at 412.765 kb on - strand at 412.765 kb on - strand at 412.765 kb on - strand at 412.824 kb on + strand at 412.824 kb on + strand at 412.847 kb on + strand at 412.902 kb on - strand at 412.934 kb on + strand at 412.941 kb on + strand at 412.941 kb on - strand at 412.942 kb on - strand at 412.949 kb on - strand at 412.949 kb on - strand at 412.970 kb on + strand at 413.043 kb on + strand at 413.043 kb on + strand at 413.094 kb on + strand at 413.125 kb on - strand at 413.263 kb on + strand at 413.263 kb on + strand at 413.271 kb on + strand at 413.271 kb on - strand at 413.271 kb on - strand at 413.271 kb on - strand at 413.271 kb on - strand at 413.271 kb on - strand at 413.272 kb on + strand at 413.290 kb on - strand at 413.308 kb on + strand at 413.316 kb on - strand at 413.330 kb on - strand at 413.393 kb on + strand at 413.393 kb on + strand at 413.401 kb on - strand at 413.489 kb on + strand, within CSW01_02070 at 413.489 kb on + strand, within CSW01_02070 at 413.491 kb on - strand, within CSW01_02070 at 413.497 kb on - strand, within CSW01_02070 at 413.497 kb on - strand, within CSW01_02070 at 413.564 kb on - strand, within CSW01_02070 at 413.569 kb on + strand, within CSW01_02070 at 413.652 kb on + strand, within CSW01_02070 at 413.660 kb on - strand, within CSW01_02070 at 413.680 kb on + strand, within CSW01_02070 at 413.688 kb on - strand, within CSW01_02070 at 413.808 kb on - strand, within CSW01_02070 at 413.817 kb on + strand, within CSW01_02070 at 413.826 kb on - strand, within CSW01_02070 at 413.895 kb on + strand, within CSW01_02070 at 413.930 kb on - strand, within CSW01_02070 at 413.930 kb on - strand, within CSW01_02070 at 413.933 kb on - strand, within CSW01_02070 at 413.975 kb on - strand, within CSW01_02070 at 413.979 kb on - strand, within CSW01_02070 at 414.025 kb on + strand, within CSW01_02070 at 414.033 kb on - strand, within CSW01_02070 at 414.063 kb on - strand, within CSW01_02070 at 414.101 kb on - strand, within CSW01_02070 at 414.108 kb on + strand, within CSW01_02070 at 414.116 kb on - strand, within CSW01_02070 at 414.116 kb on - strand, within CSW01_02070 at 414.136 kb on + strand, within CSW01_02070 at 414.168 kb on - strand, within CSW01_02070 at 414.168 kb on - strand, within CSW01_02070 at 414.168 kb on - strand, within CSW01_02070 at 414.169 kb on - strand, within CSW01_02070 at 414.215 kb on + strand, within CSW01_02070 at 414.215 kb on + strand, within CSW01_02070 at 414.216 kb on - strand, within CSW01_02070 at 414.223 kb on - strand, within CSW01_02070 at 414.228 kb on - strand, within CSW01_02070 at 414.304 kb on - strand, within CSW01_02070 at 414.304 kb on - strand, within CSW01_02070 at 414.304 kb on - strand, within CSW01_02070 at 414.328 kb on - strand, within CSW01_02070 at 414.437 kb on + strand at 414.443 kb on - strand at 414.445 kb on - strand at 414.462 kb on + strand at 414.521 kb on - strand at 414.525 kb on + strand at 414.545 kb on + strand at 414.545 kb on + strand at 414.545 kb on + strand at 414.545 kb on + strand at 414.545 kb on + strand at 414.545 kb on + strand at 414.545 kb on + strand at 414.545 kb on + strand at 414.545 kb on + strand at 414.545 kb on + strand at 414.545 kb on + strand at 414.545 kb on + strand at 414.553 kb on - strand at 414.553 kb on - strand at 414.553 kb on - strand at 414.595 kb on + strand at 414.613 kb on + strand at 414.613 kb on + strand at 414.613 kb on + strand at 414.613 kb on + strand at 414.613 kb on + strand at 414.621 kb on - strand at 414.621 kb on - strand at 414.621 kb on - strand at 414.621 kb on - strand at 414.621 kb on - strand at 414.621 kb on - strand at 414.621 kb on - strand at 414.621 kb on - strand at 414.621 kb on - strand at 414.621 kb on - strand at 414.621 kb on - strand at 414.621 kb on - strand at 414.631 kb on - strand at 414.691 kb on + strand at 414.699 kb on - strand at 414.717 kb on + strand at 414.717 kb on + strand at 414.786 kb on - strand, within CSW01_02075 at 414.822 kb on + strand, within CSW01_02075 at 414.825 kb on - strand, within CSW01_02075 at 414.827 kb on + strand, within CSW01_02075 at 414.899 kb on - strand, within CSW01_02075 at 414.904 kb on - strand, within CSW01_02075 at 414.943 kb on + strand, within CSW01_02075 at 414.951 kb on - strand, within CSW01_02075 at 414.979 kb on + strand, within CSW01_02075 at 414.984 kb on + strand, within CSW01_02075 at 414.994 kb on + strand, within CSW01_02075 at 415.010 kb on + strand, within CSW01_02075 at 415.010 kb on + strand, within CSW01_02075 at 415.018 kb on - strand, within CSW01_02075 at 415.018 kb on - strand, within CSW01_02075 at 415.059 kb on + strand, within CSW01_02075 at 415.059 kb on + strand, within CSW01_02075 at 415.067 kb on - strand, within CSW01_02075 at 415.123 kb on + strand, within CSW01_02075 at 415.131 kb on - strand, within CSW01_02075 at 415.185 kb on - strand, within CSW01_02075 at 415.276 kb on - strand, within CSW01_02075 at 415.349 kb on + strand, within CSW01_02075 at 415.349 kb on + strand, within CSW01_02075 at 415.349 kb on + strand, within CSW01_02075 at 415.349 kb on + strand, within CSW01_02075 at 415.349 kb on + strand, within CSW01_02075 at 415.349 kb on + strand, within CSW01_02075 at 415.349 kb on + strand, within CSW01_02075 at 415.349 kb on + strand, within CSW01_02075 at 415.349 kb on + strand, within CSW01_02075 at 415.349 kb on + strand, within CSW01_02075 at 415.349 kb on + strand, within CSW01_02075 at 415.349 kb on + strand, within CSW01_02075 at 415.349 kb on + strand, within CSW01_02075 at 415.349 kb on + strand, within CSW01_02075 at 415.349 kb on + strand, within CSW01_02075 at 415.349 kb on + strand, within CSW01_02075 at 415.349 kb on + strand, within CSW01_02075 at 415.349 kb on + strand, within CSW01_02075 at 415.357 kb on - strand, within CSW01_02075 at 415.357 kb on - strand, within CSW01_02075 at 415.357 kb on - strand, within CSW01_02075 at 415.357 kb on - strand, within CSW01_02075 at 415.357 kb on - strand, within CSW01_02075 at 415.357 kb on - strand, within CSW01_02075 at 415.357 kb on - strand, within CSW01_02075 at 415.357 kb on - strand, within CSW01_02075 at 415.357 kb on - strand, within CSW01_02075 at 415.357 kb on - strand, within CSW01_02075 at 415.357 kb on - strand, within CSW01_02075 at 415.357 kb on - strand, within CSW01_02075 at 415.357 kb on - strand, within CSW01_02075 at 415.357 kb on - strand, within CSW01_02075 at 415.357 kb on - strand, within CSW01_02075 at 415.357 kb on - strand, within CSW01_02075 at 415.392 kb on - strand, within CSW01_02075 at 415.416 kb on + strand, within CSW01_02075 at 415.416 kb on + strand, within CSW01_02075 at 415.424 kb on - strand, within CSW01_02075 at 415.424 kb on - strand, within CSW01_02075 at 415.424 kb on - strand, within CSW01_02075 at 415.424 kb on - strand, within CSW01_02075 at 415.451 kb on - strand, within CSW01_02075
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep2 remove 412,433 - CSW01_02065 0.67 +0.7 412,441 + CSW01_02065 0.67 -0.6 412,443 + CSW01_02065 0.67 +0.5 412,451 - CSW01_02065 0.68 -0.6 412,459 - CSW01_02065 0.68 +1.3 412,492 + CSW01_02065 0.71 -0.8 412,508 + CSW01_02065 0.72 -2.1 412,529 - CSW01_02065 0.74 -2.2 412,566 + CSW01_02065 0.76 -0.9 412,615 + CSW01_02065 0.80 -4.3 412,709 + CSW01_02065 0.87 +0.2 412,709 + CSW01_02065 0.87 -1.7 412,715 - CSW01_02065 0.87 +1.0 412,715 - CSW01_02065 0.87 +0.9 412,757 + -1.6 412,757 + -2.7 412,757 + +1.7 412,757 + -0.4 412,757 + -2.9 412,757 + -0.7 412,757 + +0.7 412,757 + +0.5 412,757 + -2.8 412,757 + -2.6 412,757 + -1.4 412,757 + -0.7 412,757 + -0.4 412,757 + +0.3 412,757 + +0.4 412,757 + +1.2 412,757 + +0.5 412,757 + +0.1 412,757 + -0.4 412,757 + -0.2 412,765 - +0.4 412,765 - -0.0 412,765 - +0.6 412,765 - +1.1 412,765 - -1.9 412,765 - -3.6 412,765 - +1.8 412,765 - -1.8 412,765 - +0.8 412,765 - -0.1 412,765 - -0.3 412,765 - +1.0 412,824 + -4.4 412,824 + -2.5 412,847 + +1.0 412,902 - +0.5 412,934 + -1.3 412,941 + -2.9 412,941 - +0.3 412,942 - -0.5 412,949 - +1.6 412,949 - +0.2 412,970 + -4.3 413,043 + +0.4 413,043 + -2.3 413,094 + -1.9 413,125 - +1.4 413,263 + +0.2 413,263 + -2.7 413,271 + -3.6 413,271 - +1.8 413,271 - +1.3 413,271 - -4.1 413,271 - -0.9 413,271 - -3.5 413,272 + -1.3 413,290 - -0.8 413,308 + +0.1 413,316 - -0.4 413,330 - -0.0 413,393 + +0.8 413,393 + +1.0 413,401 - -2.6 413,489 + CSW01_02070 0.12 +0.8 413,489 + CSW01_02070 0.12 -0.1 413,491 - CSW01_02070 0.13 -2.3 413,497 - CSW01_02070 0.13 +1.2 413,497 - CSW01_02070 0.13 +1.9 413,564 - CSW01_02070 0.19 +1.5 413,569 + CSW01_02070 0.20 +0.2 413,652 + CSW01_02070 0.27 -1.7 413,660 - CSW01_02070 0.28 -0.4 413,680 + CSW01_02070 0.29 -3.6 413,688 - CSW01_02070 0.30 +1.3 413,808 - CSW01_02070 0.41 +0.7 413,817 + CSW01_02070 0.42 +0.9 413,826 - CSW01_02070 0.43 +0.3 413,895 + CSW01_02070 0.49 +1.2 413,930 - CSW01_02070 0.52 +1.6 413,930 - CSW01_02070 0.52 -0.9 413,933 - CSW01_02070 0.52 +1.1 413,975 - CSW01_02070 0.56 +0.3 413,979 - CSW01_02070 0.56 -3.4 414,025 + CSW01_02070 0.60 -0.1 414,033 - CSW01_02070 0.61 +0.2 414,063 - CSW01_02070 0.64 -3.2 414,101 - CSW01_02070 0.67 +0.1 414,108 + CSW01_02070 0.68 -0.3 414,116 - CSW01_02070 0.68 +1.5 414,116 - CSW01_02070 0.68 -1.8 414,136 + CSW01_02070 0.70 -1.9 414,168 - CSW01_02070 0.73 -2.6 414,168 - CSW01_02070 0.73 +1.3 414,168 - CSW01_02070 0.73 +1.1 414,169 - CSW01_02070 0.73 -0.1 414,215 + CSW01_02070 0.77 +0.7 414,215 + CSW01_02070 0.77 +0.6 414,216 - CSW01_02070 0.77 +1.7 414,223 - CSW01_02070 0.78 -0.8 414,228 - CSW01_02070 0.78 +1.0 414,304 - CSW01_02070 0.85 -1.9 414,304 - CSW01_02070 0.85 +1.2 414,304 - CSW01_02070 0.85 -0.3 414,328 - CSW01_02070 0.87 +2.4 414,437 + +0.7 414,443 - +0.0 414,445 - -4.8 414,462 + -0.6 414,521 - -0.6 414,525 + +1.8 414,545 + -2.5 414,545 + +0.3 414,545 + -4.1 414,545 + -1.3 414,545 + +0.1 414,545 + -0.2 414,545 + +0.8 414,545 + -2.0 414,545 + -2.9 414,545 + -0.6 414,545 + +0.2 414,545 + -1.3 414,553 - +0.5 414,553 - +0.7 414,553 - -0.2 414,595 + +0.6 414,613 + -0.2 414,613 + -1.7 414,613 + -0.9 414,613 + +0.2 414,613 + -2.9 414,621 - -1.1 414,621 - -3.1 414,621 - +1.5 414,621 - -2.0 414,621 - -3.5 414,621 - +1.6 414,621 - +0.7 414,621 - +1.3 414,621 - -3.7 414,621 - +1.6 414,621 - -1.3 414,621 - +0.3 414,631 - -0.0 414,691 + -1.5 414,699 - -4.2 414,717 + +1.1 414,717 + -2.8 414,786 - CSW01_02075 0.13 -0.6 414,822 + CSW01_02075 0.15 +0.7 414,825 - CSW01_02075 0.15 +1.1 414,827 + CSW01_02075 0.16 -1.3 414,899 - CSW01_02075 0.20 -2.1 414,904 - CSW01_02075 0.20 +0.6 414,943 + CSW01_02075 0.22 -3.6 414,951 - CSW01_02075 0.23 -3.3 414,979 + CSW01_02075 0.24 +0.1 414,984 + CSW01_02075 0.24 +0.1 414,994 + CSW01_02075 0.25 -4.3 415,010 + CSW01_02075 0.26 +0.3 415,010 + CSW01_02075 0.26 -2.9 415,018 - CSW01_02075 0.26 -1.2 415,018 - CSW01_02075 0.26 +0.6 415,059 + CSW01_02075 0.29 -2.2 415,059 + CSW01_02075 0.29 -2.7 415,067 - CSW01_02075 0.29 -0.0 415,123 + CSW01_02075 0.32 -3.7 415,131 - CSW01_02075 0.33 +0.2 415,185 - CSW01_02075 0.36 +0.1 415,276 - CSW01_02075 0.41 -2.8 415,349 + CSW01_02075 0.45 -2.9 415,349 + CSW01_02075 0.45 -1.3 415,349 + CSW01_02075 0.45 +0.3 415,349 + CSW01_02075 0.45 +1.1 415,349 + CSW01_02075 0.45 +0.8 415,349 + CSW01_02075 0.45 -3.7 415,349 + CSW01_02075 0.45 +1.0 415,349 + CSW01_02075 0.45 -0.8 415,349 + CSW01_02075 0.45 +0.5 415,349 + CSW01_02075 0.45 +0.6 415,349 + CSW01_02075 0.45 +1.1 415,349 + CSW01_02075 0.45 -0.2 415,349 + CSW01_02075 0.45 +1.1 415,349 + CSW01_02075 0.45 +0.0 415,349 + CSW01_02075 0.45 -2.7 415,349 + CSW01_02075 0.45 +0.6 415,349 + CSW01_02075 0.45 +1.0 415,349 + CSW01_02075 0.45 -0.1 415,357 - CSW01_02075 0.45 -0.7 415,357 - CSW01_02075 0.45 +0.6 415,357 - CSW01_02075 0.45 +0.1 415,357 - CSW01_02075 0.45 -1.8 415,357 - CSW01_02075 0.45 +1.2 415,357 - CSW01_02075 0.45 +0.9 415,357 - CSW01_02075 0.45 -0.7 415,357 - CSW01_02075 0.45 -0.3 415,357 - CSW01_02075 0.45 +0.7 415,357 - CSW01_02075 0.45 -3.5 415,357 - CSW01_02075 0.45 -1.4 415,357 - CSW01_02075 0.45 -0.6 415,357 - CSW01_02075 0.45 +0.5 415,357 - CSW01_02075 0.45 +0.7 415,357 - CSW01_02075 0.45 +1.4 415,357 - CSW01_02075 0.45 -2.9 415,392 - CSW01_02075 0.47 +0.6 415,416 + CSW01_02075 0.48 -0.8 415,416 + CSW01_02075 0.48 -3.5 415,424 - CSW01_02075 0.49 +0.4 415,424 - CSW01_02075 0.49 -0.5 415,424 - CSW01_02075 0.49 +0.3 415,424 - CSW01_02075 0.49 +0.6 415,451 - CSW01_02075 0.50 -0.1
Or see this region's nucleotide sequence