Experiment: ICP1_phage_235.3_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_01905 and CSW01_01910 are separated by 122 nucleotides CSW01_01910 and CSW01_01915 are separated by 302 nucleotides CSW01_01915 and CSW01_01920 are separated by 69 nucleotides
CSW01_01905: CSW01_01905 - elongation factor G, at 378,282 to 380,378
_01905
CSW01_01910: CSW01_01910 - elongation factor Tu, at 380,501 to 381,685
_01910
CSW01_01915: CSW01_01915 - bacterioferritin-associated ferredoxin, at 381,988 to 382,176
_01915
CSW01_01920: CSW01_01920 - bacterioferritin, at 382,246 to 382,722
_01920
Position (kb) 380
381
382 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 381.817 kb on + strand at 381.825 kb on - strand at 381.843 kb on - strand at 381.901 kb on + strand at 381.940 kb on + strand at 382.026 kb on - strand, within CSW01_01915 at 382.060 kb on - strand, within CSW01_01915 at 382.082 kb on + strand, within CSW01_01915 at 382.090 kb on - strand, within CSW01_01915 at 382.090 kb on - strand, within CSW01_01915 at 382.092 kb on + strand, within CSW01_01915 at 382.172 kb on + strand at 382.180 kb on - strand at 382.180 kb on - strand at 382.198 kb on + strand at 382.206 kb on - strand at 382.206 kb on - strand at 382.206 kb on - strand at 382.236 kb on + strand at 382.239 kb on - strand at 382.239 kb on - strand at 382.345 kb on + strand, within CSW01_01920 at 382.396 kb on - strand, within CSW01_01920
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep2 remove 381,817 + -0.0 381,825 - -1.7 381,843 - +0.5 381,901 + -4.2 381,940 + +1.3 382,026 - CSW01_01915 0.20 -0.1 382,060 - CSW01_01915 0.38 -0.2 382,082 + CSW01_01915 0.50 +0.6 382,090 - CSW01_01915 0.54 -4.2 382,090 - CSW01_01915 0.54 +0.1 382,092 + CSW01_01915 0.55 -1.5 382,172 + -0.9 382,180 - +0.4 382,180 - -1.8 382,198 + -2.7 382,206 - +0.9 382,206 - -3.0 382,206 - -3.3 382,236 + -1.0 382,239 - -2.9 382,239 - -0.4 382,345 + CSW01_01920 0.21 -0.2 382,396 - CSW01_01920 0.31 -2.4
Or see this region's nucleotide sequence