Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01465

Experiment: ICP1_phage_235.3_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01460 and CSW01_01465 are separated by 221 nucleotidesCSW01_01465 and CSW01_01470 are separated by 12 nucleotides CSW01_01460: CSW01_01460 - TonB-dependent siderophore receptor, at 290,695 to 292,737 _01460 CSW01_01465: CSW01_01465 - ketohydroxyglutarate aldolase, at 292,959 to 293,564 _01465 CSW01_01470: CSW01_01470 - permease, at 293,577 to 294,953 _01470 Position (kb) 292 293 294Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 291.961 kb on + strand, within CSW01_01460at 291.964 kb on + strand, within CSW01_01460at 291.969 kb on - strand, within CSW01_01460at 291.969 kb on - strand, within CSW01_01460at 291.973 kb on + strand, within CSW01_01460at 291.981 kb on - strand, within CSW01_01460at 292.000 kb on - strand, within CSW01_01460at 292.005 kb on - strand, within CSW01_01460at 292.050 kb on - strand, within CSW01_01460at 292.056 kb on + strand, within CSW01_01460at 292.056 kb on + strand, within CSW01_01460at 292.056 kb on + strand, within CSW01_01460at 292.056 kb on + strand, within CSW01_01460at 292.056 kb on + strand, within CSW01_01460at 292.056 kb on + strand, within CSW01_01460at 292.056 kb on + strand, within CSW01_01460at 292.064 kb on - strand, within CSW01_01460at 292.064 kb on - strand, within CSW01_01460at 292.064 kb on - strand, within CSW01_01460at 292.064 kb on - strand, within CSW01_01460at 292.098 kb on - strand, within CSW01_01460at 292.098 kb on - strand, within CSW01_01460at 292.142 kb on + strand, within CSW01_01460at 292.144 kb on + strand, within CSW01_01460at 292.163 kb on + strand, within CSW01_01460at 292.182 kb on - strand, within CSW01_01460at 292.199 kb on + strand, within CSW01_01460at 292.199 kb on + strand, within CSW01_01460at 292.297 kb on + strand, within CSW01_01460at 292.305 kb on + strand, within CSW01_01460at 292.305 kb on + strand, within CSW01_01460at 292.305 kb on + strand, within CSW01_01460at 292.305 kb on + strand, within CSW01_01460at 292.316 kb on - strand, within CSW01_01460at 292.332 kb on - strand, within CSW01_01460at 292.382 kb on + strand, within CSW01_01460at 292.385 kb on - strand, within CSW01_01460at 292.390 kb on + strand, within CSW01_01460at 292.395 kb on - strand, within CSW01_01460at 292.449 kb on + strand, within CSW01_01460at 292.538 kb on + strandat 292.588 kb on - strandat 292.637 kb on - strandat 292.654 kb on + strandat 292.654 kb on + strandat 292.700 kb on + strandat 292.712 kb on + strandat 292.720 kb on - strandat 292.749 kb on - strandat 292.878 kb on - strandat 292.956 kb on + strandat 292.956 kb on + strandat 292.956 kb on + strandat 292.956 kb on + strandat 292.964 kb on - strandat 292.987 kb on - strandat 293.007 kb on - strandat 293.105 kb on + strand, within CSW01_01465at 293.105 kb on + strand, within CSW01_01465at 293.105 kb on + strand, within CSW01_01465at 293.105 kb on + strand, within CSW01_01465at 293.113 kb on - strand, within CSW01_01465at 293.113 kb on - strand, within CSW01_01465at 293.113 kb on - strand, within CSW01_01465at 293.113 kb on - strand, within CSW01_01465at 293.113 kb on - strand, within CSW01_01465at 293.113 kb on - strand, within CSW01_01465at 293.119 kb on + strand, within CSW01_01465at 293.133 kb on - strand, within CSW01_01465at 293.187 kb on - strand, within CSW01_01465at 293.254 kb on + strand, within CSW01_01465at 293.289 kb on + strand, within CSW01_01465at 293.289 kb on + strand, within CSW01_01465at 293.289 kb on + strand, within CSW01_01465at 293.297 kb on - strand, within CSW01_01465at 293.297 kb on - strand, within CSW01_01465at 293.297 kb on - strand, within CSW01_01465at 293.312 kb on + strand, within CSW01_01465at 293.318 kb on - strand, within CSW01_01465at 293.343 kb on - strand, within CSW01_01465at 293.350 kb on + strand, within CSW01_01465at 293.350 kb on + strand, within CSW01_01465at 293.350 kb on + strand, within CSW01_01465at 293.350 kb on + strand, within CSW01_01465at 293.350 kb on + strand, within CSW01_01465at 293.350 kb on + strand, within CSW01_01465at 293.350 kb on + strand, within CSW01_01465at 293.350 kb on + strand, within CSW01_01465at 293.350 kb on + strand, within CSW01_01465at 293.350 kb on + strand, within CSW01_01465at 293.352 kb on + strand, within CSW01_01465at 293.357 kb on + strand, within CSW01_01465at 293.358 kb on - strand, within CSW01_01465at 293.358 kb on - strand, within CSW01_01465at 293.358 kb on - strand, within CSW01_01465at 293.358 kb on - strand, within CSW01_01465at 293.381 kb on + strand, within CSW01_01465at 293.389 kb on - strand, within CSW01_01465at 293.389 kb on - strand, within CSW01_01465at 293.392 kb on + strand, within CSW01_01465at 293.400 kb on - strand, within CSW01_01465at 293.484 kb on - strand, within CSW01_01465at 293.552 kb on + strandat 293.552 kb on + strandat 293.560 kb on - strandat 293.560 kb on - strandat 293.567 kb on + strandat 293.567 kb on + strandat 293.567 kb on + strandat 293.567 kb on + strandat 293.567 kb on + strandat 293.567 kb on - strandat 293.574 kb on - strandat 293.575 kb on - strandat 293.575 kb on - strandat 293.575 kb on - strandat 293.575 kb on - strandat 293.575 kb on - strandat 293.575 kb on - strandat 293.575 kb on - strandat 293.582 kb on + strandat 293.590 kb on - strandat 293.590 kb on - strandat 293.590 kb on - strandat 293.630 kb on - strandat 293.729 kb on + strand, within CSW01_01470at 293.729 kb on + strand, within CSW01_01470at 293.734 kb on - strand, within CSW01_01470at 293.756 kb on + strand, within CSW01_01470at 293.781 kb on - strand, within CSW01_01470at 293.781 kb on - strand, within CSW01_01470at 293.783 kb on + strand, within CSW01_01470at 293.783 kb on + strand, within CSW01_01470at 293.783 kb on + strand, within CSW01_01470at 293.791 kb on - strand, within CSW01_01470at 293.814 kb on - strand, within CSW01_01470at 293.815 kb on - strand, within CSW01_01470at 293.845 kb on + strand, within CSW01_01470at 293.869 kb on - strand, within CSW01_01470at 293.949 kb on - strand, within CSW01_01470at 293.973 kb on - strand, within CSW01_01470at 293.979 kb on + strand, within CSW01_01470at 293.992 kb on + strand, within CSW01_01470at 294.062 kb on - strand, within CSW01_01470at 294.062 kb on - strand, within CSW01_01470at 294.082 kb on - strand, within CSW01_01470at 294.092 kb on - strand, within CSW01_01470at 294.102 kb on - strand, within CSW01_01470at 294.115 kb on + strand, within CSW01_01470at 294.115 kb on + strand, within CSW01_01470at 294.115 kb on + strand, within CSW01_01470at 294.123 kb on - strand, within CSW01_01470at 294.184 kb on - strand, within CSW01_01470at 294.220 kb on + strand, within CSW01_01470at 294.224 kb on + strand, within CSW01_01470at 294.234 kb on + strand, within CSW01_01470at 294.235 kb on + strand, within CSW01_01470at 294.242 kb on - strand, within CSW01_01470at 294.242 kb on - strand, within CSW01_01470at 294.242 kb on - strand, within CSW01_01470at 294.242 kb on - strand, within CSW01_01470at 294.243 kb on - strand, within CSW01_01470at 294.243 kb on - strand, within CSW01_01470at 294.260 kb on + strand, within CSW01_01470at 294.260 kb on + strand, within CSW01_01470at 294.268 kb on - strand, within CSW01_01470at 294.268 kb on - strand, within CSW01_01470at 294.352 kb on + strand, within CSW01_01470at 294.415 kb on + strand, within CSW01_01470at 294.420 kb on + strand, within CSW01_01470at 294.433 kb on - strand, within CSW01_01470at 294.458 kb on + strand, within CSW01_01470at 294.465 kb on + strand, within CSW01_01470at 294.466 kb on - strand, within CSW01_01470at 294.466 kb on - strand, within CSW01_01470at 294.466 kb on - strand, within CSW01_01470at 294.466 kb on - strand, within CSW01_01470at 294.466 kb on - strand, within CSW01_01470at 294.468 kb on + strand, within CSW01_01470at 294.490 kb on + strand, within CSW01_01470at 294.490 kb on + strand, within CSW01_01470at 294.507 kb on + strand, within CSW01_01470

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep2
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291,961 + CSW01_01460 0.62 +1.1
291,964 + CSW01_01460 0.62 -1.9
291,969 - CSW01_01460 0.62 +0.9
291,969 - CSW01_01460 0.62 +0.9
291,973 + CSW01_01460 0.63 +1.3
291,981 - CSW01_01460 0.63 -0.2
292,000 - CSW01_01460 0.64 +1.2
292,005 - CSW01_01460 0.64 +0.7
292,050 - CSW01_01460 0.66 +0.1
292,056 + CSW01_01460 0.67 +0.8
292,056 + CSW01_01460 0.67 +0.7
292,056 + CSW01_01460 0.67 -3.2
292,056 + CSW01_01460 0.67 -4.4
292,056 + CSW01_01460 0.67 +0.2
292,056 + CSW01_01460 0.67 -1.5
292,056 + CSW01_01460 0.67 -4.2
292,064 - CSW01_01460 0.67 -3.7
292,064 - CSW01_01460 0.67 -2.1
292,064 - CSW01_01460 0.67 -2.2
292,064 - CSW01_01460 0.67 +0.0
292,098 - CSW01_01460 0.69 +1.6
292,098 - CSW01_01460 0.69 +1.1
292,142 + CSW01_01460 0.71 -1.3
292,144 + CSW01_01460 0.71 -3.1
292,163 + CSW01_01460 0.72 +0.2
292,182 - CSW01_01460 0.73 +0.4
292,199 + CSW01_01460 0.74 +0.0
292,199 + CSW01_01460 0.74 +0.2
292,297 + CSW01_01460 0.78 -1.3
292,305 + CSW01_01460 0.79 -0.1
292,305 + CSW01_01460 0.79 -0.1
292,305 + CSW01_01460 0.79 +0.3
292,305 + CSW01_01460 0.79 +0.5
292,316 - CSW01_01460 0.79 -2.7
292,332 - CSW01_01460 0.80 -1.9
292,382 + CSW01_01460 0.83 +1.7
292,385 - CSW01_01460 0.83 +0.5
292,390 + CSW01_01460 0.83 +0.3
292,395 - CSW01_01460 0.83 +1.1
292,449 + CSW01_01460 0.86 +0.2
292,538 + +0.3
292,588 - +0.9
292,637 - +1.3
292,654 + +2.1
292,654 + -3.5
292,700 + -1.8
292,712 + -2.1
292,720 - +0.2
292,749 - +1.6
292,878 - +1.6
292,956 + +1.3
292,956 + -0.5
292,956 + +0.1
292,956 + +2.5
292,964 - -0.2
292,987 - +1.6
293,007 - +1.2
293,105 + CSW01_01465 0.24 -0.6
293,105 + CSW01_01465 0.24 -3.4
293,105 + CSW01_01465 0.24 -0.3
293,105 + CSW01_01465 0.24 -3.2
293,113 - CSW01_01465 0.25 -2.0
293,113 - CSW01_01465 0.25 -3.5
293,113 - CSW01_01465 0.25 +0.3
293,113 - CSW01_01465 0.25 +0.1
293,113 - CSW01_01465 0.25 -0.2
293,113 - CSW01_01465 0.25 +1.9
293,119 + CSW01_01465 0.26 +0.0
293,133 - CSW01_01465 0.29 -0.7
293,187 - CSW01_01465 0.38 -0.4
293,254 + CSW01_01465 0.49 +0.7
293,289 + CSW01_01465 0.54 +0.5
293,289 + CSW01_01465 0.54 -1.3
293,289 + CSW01_01465 0.54 +0.6
293,297 - CSW01_01465 0.56 -2.6
293,297 - CSW01_01465 0.56 -2.1
293,297 - CSW01_01465 0.56 -2.0
293,312 + CSW01_01465 0.58 +0.4
293,318 - CSW01_01465 0.59 -2.0
293,343 - CSW01_01465 0.63 +0.3
293,350 + CSW01_01465 0.65 -0.4
293,350 + CSW01_01465 0.65 +0.5
293,350 + CSW01_01465 0.65 -1.8
293,350 + CSW01_01465 0.65 -3.4
293,350 + CSW01_01465 0.65 -0.6
293,350 + CSW01_01465 0.65 +0.1
293,350 + CSW01_01465 0.65 +0.7
293,350 + CSW01_01465 0.65 -2.5
293,350 + CSW01_01465 0.65 -2.2
293,350 + CSW01_01465 0.65 -2.4
293,352 + CSW01_01465 0.65 -2.5
293,357 + CSW01_01465 0.66 +3.1
293,358 - CSW01_01465 0.66 -0.9
293,358 - CSW01_01465 0.66 -0.7
293,358 - CSW01_01465 0.66 -2.7
293,358 - CSW01_01465 0.66 +1.7
293,381 + CSW01_01465 0.70 -0.4
293,389 - CSW01_01465 0.71 +0.8
293,389 - CSW01_01465 0.71 -2.6
293,392 + CSW01_01465 0.71 -1.0
293,400 - CSW01_01465 0.73 +0.1
293,484 - CSW01_01465 0.87 -1.5
293,552 + +1.3
293,552 + -4.2
293,560 - -2.7
293,560 - +0.6
293,567 + +0.3
293,567 + -1.1
293,567 + -3.6
293,567 + +1.1
293,567 + -0.6
293,567 - +0.4
293,574 - -1.9
293,575 - +4.4
293,575 - +2.3
293,575 - +0.2
293,575 - +2.9
293,575 - -0.7
293,575 - +1.1
293,575 - +2.4
293,582 + -0.3
293,590 - +0.6
293,590 - +0.2
293,590 - -0.9
293,630 - +1.1
293,729 + CSW01_01470 0.11 -2.0
293,729 + CSW01_01470 0.11 +1.7
293,734 - CSW01_01470 0.11 +1.7
293,756 + CSW01_01470 0.13 +0.3
293,781 - CSW01_01470 0.15 +1.3
293,781 - CSW01_01470 0.15 +0.2
293,783 + CSW01_01470 0.15 -1.8
293,783 + CSW01_01470 0.15 +0.0
293,783 + CSW01_01470 0.15 +0.9
293,791 - CSW01_01470 0.16 -2.2
293,814 - CSW01_01470 0.17 -2.0
293,815 - CSW01_01470 0.17 -1.1
293,845 + CSW01_01470 0.19 +0.1
293,869 - CSW01_01470 0.21 -0.2
293,949 - CSW01_01470 0.27 -3.8
293,973 - CSW01_01470 0.29 +1.5
293,979 + CSW01_01470 0.29 +0.1
293,992 + CSW01_01470 0.30 -4.6
294,062 - CSW01_01470 0.35 -1.3
294,062 - CSW01_01470 0.35 -1.8
294,082 - CSW01_01470 0.37 +0.7
294,092 - CSW01_01470 0.37 -0.9
294,102 - CSW01_01470 0.38 -2.3
294,115 + CSW01_01470 0.39 +0.5
294,115 + CSW01_01470 0.39 +1.1
294,115 + CSW01_01470 0.39 +0.8
294,123 - CSW01_01470 0.40 +2.2
294,184 - CSW01_01470 0.44 +1.1
294,220 + CSW01_01470 0.47 -1.7
294,224 + CSW01_01470 0.47 -2.8
294,234 + CSW01_01470 0.48 +0.9
294,235 + CSW01_01470 0.48 +1.6
294,242 - CSW01_01470 0.48 -0.4
294,242 - CSW01_01470 0.48 -0.4
294,242 - CSW01_01470 0.48 +1.7
294,242 - CSW01_01470 0.48 -4.5
294,243 - CSW01_01470 0.48 +1.3
294,243 - CSW01_01470 0.48 -0.6
294,260 + CSW01_01470 0.50 +0.8
294,260 + CSW01_01470 0.50 +0.6
294,268 - CSW01_01470 0.50 +0.2
294,268 - CSW01_01470 0.50 -4.3
294,352 + CSW01_01470 0.56 +2.8
294,415 + CSW01_01470 0.61 -3.7
294,420 + CSW01_01470 0.61 +0.5
294,433 - CSW01_01470 0.62 -0.1
294,458 + CSW01_01470 0.64 +0.4
294,465 + CSW01_01470 0.64 -0.5
294,466 - CSW01_01470 0.65 -1.5
294,466 - CSW01_01470 0.65 -2.1
294,466 - CSW01_01470 0.65 -0.4
294,466 - CSW01_01470 0.65 -2.5
294,466 - CSW01_01470 0.65 -0.1
294,468 + CSW01_01470 0.65 -0.1
294,490 + CSW01_01470 0.66 -3.8
294,490 + CSW01_01470 0.66 -0.1
294,507 + CSW01_01470 0.68 +1.9

Or see this region's nucleotide sequence