Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01400

Experiment: ICP1_phage_235.3_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01395 and CSW01_01400 are separated by 347 nucleotidesCSW01_01400 and CSW01_01405 are separated by 371 nucleotidesCSW01_01405 and CSW01_01410 are separated by 0 nucleotides CSW01_01395: CSW01_01395 - transcriptional regulator, at 274,414 to 275,394 _01395 CSW01_01400: CSW01_01400 - HlyC/CorC family transporter, at 275,742 to 276,800 _01400 CSW01_01405: CSW01_01405 - DNA-binding protein HU-alpha, at 277,172 to 277,444 _01405 CSW01_01410: CSW01_01410 - DUF1481 domain-containing protein, at 277,445 to 278,179 _01410 Position (kb) 275 276 277Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 274.746 kb on - strand, within CSW01_01395at 274.756 kb on + strand, within CSW01_01395at 274.764 kb on - strand, within CSW01_01395at 274.794 kb on - strand, within CSW01_01395at 274.895 kb on + strand, within CSW01_01395at 274.900 kb on + strand, within CSW01_01395at 274.913 kb on + strand, within CSW01_01395at 274.932 kb on + strand, within CSW01_01395at 274.937 kb on + strand, within CSW01_01395at 274.940 kb on - strand, within CSW01_01395at 274.991 kb on - strand, within CSW01_01395at 275.004 kb on + strand, within CSW01_01395at 275.004 kb on + strand, within CSW01_01395at 275.004 kb on + strand, within CSW01_01395at 275.004 kb on + strand, within CSW01_01395at 275.004 kb on + strand, within CSW01_01395at 275.004 kb on + strand, within CSW01_01395at 275.004 kb on + strand, within CSW01_01395at 275.004 kb on + strand, within CSW01_01395at 275.004 kb on + strand, within CSW01_01395at 275.012 kb on - strand, within CSW01_01395at 275.012 kb on - strand, within CSW01_01395at 275.012 kb on - strand, within CSW01_01395at 275.012 kb on - strand, within CSW01_01395at 275.012 kb on - strand, within CSW01_01395at 275.012 kb on - strand, within CSW01_01395at 275.012 kb on - strand, within CSW01_01395at 275.012 kb on - strand, within CSW01_01395at 275.012 kb on - strand, within CSW01_01395at 275.012 kb on - strand, within CSW01_01395at 275.012 kb on - strand, within CSW01_01395at 275.012 kb on - strand, within CSW01_01395at 275.012 kb on - strand, within CSW01_01395at 275.014 kb on + strand, within CSW01_01395at 275.014 kb on + strand, within CSW01_01395at 275.022 kb on - strand, within CSW01_01395at 275.043 kb on - strand, within CSW01_01395at 275.045 kb on - strand, within CSW01_01395at 275.085 kb on + strand, within CSW01_01395at 275.109 kb on - strand, within CSW01_01395at 275.114 kb on - strand, within CSW01_01395at 275.209 kb on + strand, within CSW01_01395at 275.233 kb on + strand, within CSW01_01395at 275.265 kb on - strand, within CSW01_01395at 275.294 kb on + strand, within CSW01_01395at 275.299 kb on + strandat 275.439 kb on - strandat 275.479 kb on + strandat 275.544 kb on + strandat 275.544 kb on + strandat 275.568 kb on + strandat 275.576 kb on - strandat 275.576 kb on - strandat 275.577 kb on - strandat 275.583 kb on + strandat 275.583 kb on + strandat 275.583 kb on + strandat 275.586 kb on - strandat 275.591 kb on - strandat 275.591 kb on - strandat 275.598 kb on - strandat 275.598 kb on - strandat 275.604 kb on - strandat 275.614 kb on - strandat 275.668 kb on - strandat 275.717 kb on + strandat 275.760 kb on + strandat 275.862 kb on + strand, within CSW01_01400at 275.868 kb on - strand, within CSW01_01400at 275.882 kb on + strand, within CSW01_01400at 275.890 kb on - strand, within CSW01_01400at 275.890 kb on - strand, within CSW01_01400at 275.898 kb on + strand, within CSW01_01400at 275.898 kb on + strand, within CSW01_01400at 275.898 kb on + strand, within CSW01_01400at 275.898 kb on + strand, within CSW01_01400at 275.903 kb on + strand, within CSW01_01400at 275.906 kb on - strand, within CSW01_01400at 275.906 kb on - strand, within CSW01_01400at 275.906 kb on - strand, within CSW01_01400at 275.906 kb on - strand, within CSW01_01400at 275.911 kb on - strand, within CSW01_01400at 275.911 kb on - strand, within CSW01_01400at 275.911 kb on - strand, within CSW01_01400at 275.961 kb on + strand, within CSW01_01400at 275.968 kb on - strand, within CSW01_01400at 275.979 kb on + strand, within CSW01_01400at 275.979 kb on + strand, within CSW01_01400at 275.979 kb on + strand, within CSW01_01400at 275.979 kb on + strand, within CSW01_01400at 275.979 kb on + strand, within CSW01_01400at 275.986 kb on + strand, within CSW01_01400at 275.994 kb on - strand, within CSW01_01400at 276.065 kb on + strand, within CSW01_01400at 276.065 kb on + strand, within CSW01_01400at 276.065 kb on + strand, within CSW01_01400at 276.073 kb on - strand, within CSW01_01400at 276.073 kb on - strand, within CSW01_01400at 276.073 kb on - strand, within CSW01_01400at 276.073 kb on - strand, within CSW01_01400at 276.085 kb on - strand, within CSW01_01400at 276.109 kb on + strand, within CSW01_01400at 276.134 kb on + strand, within CSW01_01400at 276.349 kb on - strand, within CSW01_01400at 276.368 kb on - strand, within CSW01_01400at 276.412 kb on + strand, within CSW01_01400at 276.420 kb on - strand, within CSW01_01400at 276.420 kb on - strand, within CSW01_01400at 276.432 kb on + strand, within CSW01_01400at 276.432 kb on + strand, within CSW01_01400at 276.432 kb on + strand, within CSW01_01400at 276.464 kb on + strand, within CSW01_01400at 276.492 kb on - strand, within CSW01_01400at 276.492 kb on - strand, within CSW01_01400at 276.502 kb on - strand, within CSW01_01400at 276.503 kb on + strand, within CSW01_01400at 276.520 kb on + strand, within CSW01_01400at 276.520 kb on + strand, within CSW01_01400at 276.520 kb on + strand, within CSW01_01400at 276.520 kb on + strand, within CSW01_01400at 276.520 kb on + strand, within CSW01_01400at 276.520 kb on + strand, within CSW01_01400at 276.520 kb on + strand, within CSW01_01400at 276.520 kb on + strand, within CSW01_01400at 276.520 kb on + strand, within CSW01_01400at 276.520 kb on + strand, within CSW01_01400at 276.523 kb on - strand, within CSW01_01400at 276.523 kb on - strand, within CSW01_01400at 276.525 kb on + strand, within CSW01_01400at 276.525 kb on + strand, within CSW01_01400at 276.528 kb on - strand, within CSW01_01400at 276.528 kb on - strand, within CSW01_01400at 276.528 kb on - strand, within CSW01_01400at 276.528 kb on - strand, within CSW01_01400at 276.528 kb on - strand, within CSW01_01400at 276.528 kb on - strand, within CSW01_01400at 276.528 kb on - strand, within CSW01_01400at 276.528 kb on - strand, within CSW01_01400at 276.528 kb on - strand, within CSW01_01400at 276.528 kb on - strand, within CSW01_01400at 276.528 kb on - strand, within CSW01_01400at 276.528 kb on - strand, within CSW01_01400at 276.528 kb on - strand, within CSW01_01400at 276.530 kb on + strand, within CSW01_01400at 276.530 kb on + strand, within CSW01_01400at 276.530 kb on + strand, within CSW01_01400at 276.533 kb on - strand, within CSW01_01400at 276.538 kb on - strand, within CSW01_01400at 276.538 kb on - strand, within CSW01_01400at 276.538 kb on - strand, within CSW01_01400at 276.538 kb on - strand, within CSW01_01400at 276.586 kb on + strand, within CSW01_01400at 276.586 kb on + strand, within CSW01_01400at 276.586 kb on + strand, within CSW01_01400at 276.586 kb on + strand, within CSW01_01400at 276.594 kb on - strand, within CSW01_01400at 276.594 kb on - strand, within CSW01_01400at 276.594 kb on - strand, within CSW01_01400at 276.594 kb on - strand, within CSW01_01400at 276.594 kb on - strand, within CSW01_01400at 276.620 kb on - strand, within CSW01_01400at 276.625 kb on - strand, within CSW01_01400at 276.647 kb on + strand, within CSW01_01400at 276.648 kb on - strand, within CSW01_01400at 276.681 kb on + strand, within CSW01_01400at 276.698 kb on + strandat 276.698 kb on + strandat 276.706 kb on - strandat 276.706 kb on - strandat 276.708 kb on + strandat 276.718 kb on + strandat 276.721 kb on - strandat 276.721 kb on - strandat 276.721 kb on - strandat 276.721 kb on - strandat 276.721 kb on - strandat 276.721 kb on - strandat 276.726 kb on - strandat 276.750 kb on + strandat 276.820 kb on - strandat 276.835 kb on - strandat 276.911 kb on - strandat 277.015 kb on + strandat 277.102 kb on - strandat 277.102 kb on - strandat 277.108 kb on - strandat 277.158 kb on - strandat 277.258 kb on + strand, within CSW01_01405at 277.264 kb on + strand, within CSW01_01405at 277.363 kb on + strand, within CSW01_01405at 277.416 kb on + strand, within CSW01_01405at 277.447 kb on + strandat 277.455 kb on - strandat 277.455 kb on - strandat 277.455 kb on - strandat 277.455 kb on - strandat 277.460 kb on - strandat 277.553 kb on - strand, within CSW01_01410at 277.558 kb on + strand, within CSW01_01410at 277.571 kb on - strand, within CSW01_01410at 277.631 kb on + strand, within CSW01_01410at 277.631 kb on + strand, within CSW01_01410at 277.631 kb on + strand, within CSW01_01410at 277.639 kb on - strand, within CSW01_01410at 277.658 kb on + strand, within CSW01_01410at 277.658 kb on + strand, within CSW01_01410at 277.658 kb on + strand, within CSW01_01410at 277.658 kb on + strand, within CSW01_01410at 277.658 kb on + strand, within CSW01_01410at 277.666 kb on - strand, within CSW01_01410at 277.710 kb on + strand, within CSW01_01410at 277.727 kb on - strand, within CSW01_01410at 277.729 kb on - strand, within CSW01_01410at 277.741 kb on + strand, within CSW01_01410at 277.754 kb on + strand, within CSW01_01410

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep2
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274,746 - CSW01_01395 0.34 +0.2
274,756 + CSW01_01395 0.35 -1.7
274,764 - CSW01_01395 0.36 -1.7
274,794 - CSW01_01395 0.39 -3.8
274,895 + CSW01_01395 0.49 +0.6
274,900 + CSW01_01395 0.50 +0.5
274,913 + CSW01_01395 0.51 -3.1
274,932 + CSW01_01395 0.53 -0.8
274,937 + CSW01_01395 0.53 +0.5
274,940 - CSW01_01395 0.54 -0.2
274,991 - CSW01_01395 0.59 -3.8
275,004 + CSW01_01395 0.60 -0.7
275,004 + CSW01_01395 0.60 -0.2
275,004 + CSW01_01395 0.60 +0.3
275,004 + CSW01_01395 0.60 -1.0
275,004 + CSW01_01395 0.60 -0.4
275,004 + CSW01_01395 0.60 +0.5
275,004 + CSW01_01395 0.60 +0.7
275,004 + CSW01_01395 0.60 +1.3
275,004 + CSW01_01395 0.60 +0.8
275,012 - CSW01_01395 0.61 +1.2
275,012 - CSW01_01395 0.61 +0.5
275,012 - CSW01_01395 0.61 -3.4
275,012 - CSW01_01395 0.61 -0.2
275,012 - CSW01_01395 0.61 +0.7
275,012 - CSW01_01395 0.61 -0.6
275,012 - CSW01_01395 0.61 +1.3
275,012 - CSW01_01395 0.61 -4.0
275,012 - CSW01_01395 0.61 +0.2
275,012 - CSW01_01395 0.61 -0.1
275,012 - CSW01_01395 0.61 +2.0
275,012 - CSW01_01395 0.61 -0.4
275,012 - CSW01_01395 0.61 -2.2
275,014 + CSW01_01395 0.61 -0.2
275,014 + CSW01_01395 0.61 +1.0
275,022 - CSW01_01395 0.62 -2.3
275,043 - CSW01_01395 0.64 +0.9
275,045 - CSW01_01395 0.64 +0.8
275,085 + CSW01_01395 0.68 -1.4
275,109 - CSW01_01395 0.71 +0.6
275,114 - CSW01_01395 0.71 -0.9
275,209 + CSW01_01395 0.81 +0.5
275,233 + CSW01_01395 0.83 -1.6
275,265 - CSW01_01395 0.87 -0.2
275,294 + CSW01_01395 0.90 -3.1
275,299 + -2.4
275,439 - -1.5
275,479 + +0.5
275,544 + +1.0
275,544 + +1.0
275,568 + -1.8
275,576 - -0.2
275,576 - +1.6
275,577 - +1.8
275,583 + -2.1
275,583 + +1.2
275,583 + -0.6
275,586 - +0.6
275,591 - -1.1
275,591 - +1.7
275,598 - +0.7
275,598 - -0.4
275,604 - -0.4
275,614 - -2.8
275,668 - -3.3
275,717 + -0.1
275,760 + -0.3
275,862 + CSW01_01400 0.11 -0.9
275,868 - CSW01_01400 0.12 +0.5
275,882 + CSW01_01400 0.13 -0.5
275,890 - CSW01_01400 0.14 +1.5
275,890 - CSW01_01400 0.14 +1.4
275,898 + CSW01_01400 0.15 +1.0
275,898 + CSW01_01400 0.15 +1.1
275,898 + CSW01_01400 0.15 +0.3
275,898 + CSW01_01400 0.15 -0.7
275,903 + CSW01_01400 0.15 -2.9
275,906 - CSW01_01400 0.15 +0.6
275,906 - CSW01_01400 0.15 +0.3
275,906 - CSW01_01400 0.15 +0.3
275,906 - CSW01_01400 0.15 -0.8
275,911 - CSW01_01400 0.16 +0.1
275,911 - CSW01_01400 0.16 +0.2
275,911 - CSW01_01400 0.16 -4.1
275,961 + CSW01_01400 0.21 -2.3
275,968 - CSW01_01400 0.21 -2.1
275,979 + CSW01_01400 0.22 -0.2
275,979 + CSW01_01400 0.22 -2.5
275,979 + CSW01_01400 0.22 +0.5
275,979 + CSW01_01400 0.22 -0.1
275,979 + CSW01_01400 0.22 -2.2
275,986 + CSW01_01400 0.23 +0.3
275,994 - CSW01_01400 0.24 -0.0
276,065 + CSW01_01400 0.31 +0.5
276,065 + CSW01_01400 0.31 -2.4
276,065 + CSW01_01400 0.31 +0.3
276,073 - CSW01_01400 0.31 +0.3
276,073 - CSW01_01400 0.31 +0.3
276,073 - CSW01_01400 0.31 +0.7
276,073 - CSW01_01400 0.31 +1.9
276,085 - CSW01_01400 0.32 +1.3
276,109 + CSW01_01400 0.35 -3.2
276,134 + CSW01_01400 0.37 +1.9
276,349 - CSW01_01400 0.57 +3.7
276,368 - CSW01_01400 0.59 -0.1
276,412 + CSW01_01400 0.63 +1.1
276,420 - CSW01_01400 0.64 -2.1
276,420 - CSW01_01400 0.64 -2.4
276,432 + CSW01_01400 0.65 +0.2
276,432 + CSW01_01400 0.65 -1.6
276,432 + CSW01_01400 0.65 -0.5
276,464 + CSW01_01400 0.68 -3.0
276,492 - CSW01_01400 0.71 -0.6
276,492 - CSW01_01400 0.71 +0.7
276,502 - CSW01_01400 0.72 +1.4
276,503 + CSW01_01400 0.72 -0.2
276,520 + CSW01_01400 0.73 -1.5
276,520 + CSW01_01400 0.73 -0.5
276,520 + CSW01_01400 0.73 +1.5
276,520 + CSW01_01400 0.73 +1.6
276,520 + CSW01_01400 0.73 +1.0
276,520 + CSW01_01400 0.73 -0.3
276,520 + CSW01_01400 0.73 -3.3
276,520 + CSW01_01400 0.73 +0.2
276,520 + CSW01_01400 0.73 -0.8
276,520 + CSW01_01400 0.73 -0.9
276,523 - CSW01_01400 0.74 -1.2
276,523 - CSW01_01400 0.74 -0.1
276,525 + CSW01_01400 0.74 -0.5
276,525 + CSW01_01400 0.74 -0.7
276,528 - CSW01_01400 0.74 -0.1
276,528 - CSW01_01400 0.74 -0.4
276,528 - CSW01_01400 0.74 -0.8
276,528 - CSW01_01400 0.74 +1.3
276,528 - CSW01_01400 0.74 -2.9
276,528 - CSW01_01400 0.74 +2.9
276,528 - CSW01_01400 0.74 -1.3
276,528 - CSW01_01400 0.74 +1.0
276,528 - CSW01_01400 0.74 +1.1
276,528 - CSW01_01400 0.74 -2.8
276,528 - CSW01_01400 0.74 +1.8
276,528 - CSW01_01400 0.74 -0.9
276,528 - CSW01_01400 0.74 +0.5
276,530 + CSW01_01400 0.74 -0.5
276,530 + CSW01_01400 0.74 -0.8
276,530 + CSW01_01400 0.74 -1.1
276,533 - CSW01_01400 0.75 +0.4
276,538 - CSW01_01400 0.75 -0.6
276,538 - CSW01_01400 0.75 -1.5
276,538 - CSW01_01400 0.75 -3.7
276,538 - CSW01_01400 0.75 +0.1
276,586 + CSW01_01400 0.80 -3.3
276,586 + CSW01_01400 0.80 +1.5
276,586 + CSW01_01400 0.80 -1.6
276,586 + CSW01_01400 0.80 -2.9
276,594 - CSW01_01400 0.80 -1.5
276,594 - CSW01_01400 0.80 -2.1
276,594 - CSW01_01400 0.80 +3.1
276,594 - CSW01_01400 0.80 -0.1
276,594 - CSW01_01400 0.80 -0.4
276,620 - CSW01_01400 0.83 -0.3
276,625 - CSW01_01400 0.83 +1.0
276,647 + CSW01_01400 0.85 -0.4
276,648 - CSW01_01400 0.86 +1.0
276,681 + CSW01_01400 0.89 +1.1
276,698 + +0.5
276,698 + +1.4
276,706 - +0.5
276,706 - +1.5
276,708 + +0.1
276,718 + +0.5
276,721 - -2.1
276,721 - +0.7
276,721 - -0.3
276,721 - +0.5
276,721 - -0.5
276,721 - -2.0
276,726 - +0.2
276,750 + -0.6
276,820 - +0.4
276,835 - -2.9
276,911 - +2.0
277,015 + -1.6
277,102 - -3.8
277,102 - +2.3
277,108 - +1.6
277,158 - +0.5
277,258 + CSW01_01405 0.32 +0.8
277,264 + CSW01_01405 0.34 +1.2
277,363 + CSW01_01405 0.70 +0.9
277,416 + CSW01_01405 0.89 +1.5
277,447 + +0.8
277,455 - -2.9
277,455 - +1.3
277,455 - -0.7
277,455 - +0.2
277,460 - +1.6
277,553 - CSW01_01410 0.15 -1.5
277,558 + CSW01_01410 0.15 -0.2
277,571 - CSW01_01410 0.17 +0.7
277,631 + CSW01_01410 0.25 -3.5
277,631 + CSW01_01410 0.25 -0.3
277,631 + CSW01_01410 0.25 -0.6
277,639 - CSW01_01410 0.26 -4.2
277,658 + CSW01_01410 0.29 -3.2
277,658 + CSW01_01410 0.29 +1.5
277,658 + CSW01_01410 0.29 +0.2
277,658 + CSW01_01410 0.29 -3.5
277,658 + CSW01_01410 0.29 +0.9
277,666 - CSW01_01410 0.30 -3.6
277,710 + CSW01_01410 0.36 -0.1
277,727 - CSW01_01410 0.38 +0.4
277,729 - CSW01_01410 0.39 -1.1
277,741 + CSW01_01410 0.40 +1.5
277,754 + CSW01_01410 0.42 -0.8

Or see this region's nucleotide sequence