Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01385

Experiment: ICP1_phage_235.3_MOI_rep2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_01375 and CSW01_01380 overlap by 1 nucleotidesCSW01_01380 and CSW01_01385 are separated by 73 nucleotidesCSW01_01385 and CSW01_01390 are separated by 362 nucleotides CSW01_01375: CSW01_01375 - IclR family transcriptional regulator, at 270,730 to 271,302 _01375 CSW01_01380: CSW01_01380 - D-2-hydroxyacid dehydrogenase, at 271,302 to 272,225 _01380 CSW01_01385: CSW01_01385 - DUF416 domain-containing protein, at 272,299 to 272,886 _01385 CSW01_01390: CSW01_01390 - mannose-6-phosphate isomerase, class I, at 273,249 to 274,448 _01390 Position (kb) 272 273Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 271.328 kb on + strandat 271.409 kb on - strand, within CSW01_01380at 271.421 kb on + strand, within CSW01_01380at 271.429 kb on - strand, within CSW01_01380at 271.443 kb on + strand, within CSW01_01380at 271.461 kb on - strand, within CSW01_01380at 271.506 kb on + strand, within CSW01_01380at 271.536 kb on + strand, within CSW01_01380at 271.544 kb on - strand, within CSW01_01380at 271.567 kb on + strand, within CSW01_01380at 271.567 kb on + strand, within CSW01_01380at 271.575 kb on - strand, within CSW01_01380at 271.622 kb on - strand, within CSW01_01380at 271.636 kb on + strand, within CSW01_01380at 271.636 kb on + strand, within CSW01_01380at 271.636 kb on + strand, within CSW01_01380at 271.636 kb on + strand, within CSW01_01380at 271.636 kb on + strand, within CSW01_01380at 271.644 kb on - strand, within CSW01_01380at 271.644 kb on - strand, within CSW01_01380at 271.644 kb on - strand, within CSW01_01380at 271.679 kb on - strand, within CSW01_01380at 271.686 kb on - strand, within CSW01_01380at 271.743 kb on - strand, within CSW01_01380at 271.768 kb on - strand, within CSW01_01380at 271.811 kb on - strand, within CSW01_01380at 271.857 kb on - strand, within CSW01_01380at 271.886 kb on + strand, within CSW01_01380at 271.898 kb on + strand, within CSW01_01380at 271.906 kb on - strand, within CSW01_01380at 271.919 kb on + strand, within CSW01_01380at 271.924 kb on + strand, within CSW01_01380at 271.924 kb on + strand, within CSW01_01380at 271.924 kb on + strand, within CSW01_01380at 271.932 kb on - strand, within CSW01_01380at 271.945 kb on + strand, within CSW01_01380at 271.945 kb on + strand, within CSW01_01380at 271.953 kb on - strand, within CSW01_01380at 271.966 kb on + strand, within CSW01_01380at 271.966 kb on + strand, within CSW01_01380at 271.966 kb on + strand, within CSW01_01380at 271.974 kb on - strand, within CSW01_01380at 272.000 kb on + strand, within CSW01_01380at 272.008 kb on - strand, within CSW01_01380at 272.008 kb on - strand, within CSW01_01380at 272.008 kb on - strand, within CSW01_01380at 272.056 kb on + strand, within CSW01_01380at 272.066 kb on + strand, within CSW01_01380at 272.066 kb on + strand, within CSW01_01380at 272.133 kb on - strandat 272.181 kb on - strandat 272.183 kb on - strandat 272.285 kb on + strandat 272.322 kb on - strandat 272.327 kb on - strandat 272.334 kb on + strandat 272.342 kb on - strandat 272.342 kb on - strandat 272.377 kb on - strand, within CSW01_01385at 272.425 kb on + strand, within CSW01_01385at 272.434 kb on + strand, within CSW01_01385at 272.449 kb on + strand, within CSW01_01385at 272.449 kb on + strand, within CSW01_01385at 272.623 kb on - strand, within CSW01_01385at 272.688 kb on + strand, within CSW01_01385at 272.688 kb on + strand, within CSW01_01385at 272.694 kb on - strand, within CSW01_01385at 272.706 kb on - strand, within CSW01_01385at 272.747 kb on - strand, within CSW01_01385at 272.764 kb on + strand, within CSW01_01385at 272.764 kb on + strand, within CSW01_01385at 272.764 kb on + strand, within CSW01_01385at 272.772 kb on - strand, within CSW01_01385at 272.772 kb on - strand, within CSW01_01385at 272.813 kb on + strand, within CSW01_01385at 272.813 kb on + strand, within CSW01_01385at 272.821 kb on - strand, within CSW01_01385at 272.821 kb on - strand, within CSW01_01385at 272.837 kb on + strandat 272.923 kb on - strandat 273.058 kb on + strandat 273.058 kb on + strandat 273.058 kb on + strandat 273.068 kb on + strandat 273.076 kb on - strandat 273.076 kb on - strandat 273.086 kb on + strandat 273.117 kb on - strandat 273.246 kb on + strandat 273.246 kb on + strandat 273.254 kb on - strandat 273.289 kb on + strandat 273.289 kb on + strandat 273.311 kb on + strandat 273.311 kb on + strandat 273.316 kb on + strandat 273.316 kb on + strandat 273.316 kb on + strandat 273.316 kb on + strandat 273.316 kb on + strandat 273.319 kb on - strandat 273.319 kb on - strandat 273.324 kb on - strandat 273.383 kb on + strand, within CSW01_01390at 273.383 kb on + strand, within CSW01_01390at 273.383 kb on + strand, within CSW01_01390at 273.391 kb on - strand, within CSW01_01390at 273.395 kb on + strand, within CSW01_01390at 273.395 kb on + strand, within CSW01_01390at 273.490 kb on + strand, within CSW01_01390at 273.490 kb on + strand, within CSW01_01390at 273.500 kb on - strand, within CSW01_01390at 273.507 kb on - strand, within CSW01_01390at 273.659 kb on + strand, within CSW01_01390at 273.659 kb on + strand, within CSW01_01390at 273.664 kb on + strand, within CSW01_01390at 273.667 kb on - strand, within CSW01_01390at 273.667 kb on - strand, within CSW01_01390at 273.667 kb on - strand, within CSW01_01390at 273.674 kb on + strand, within CSW01_01390at 273.674 kb on + strand, within CSW01_01390at 273.681 kb on - strand, within CSW01_01390at 273.709 kb on + strand, within CSW01_01390at 273.748 kb on - strand, within CSW01_01390at 273.782 kb on - strand, within CSW01_01390at 273.784 kb on + strand, within CSW01_01390at 273.785 kb on + strand, within CSW01_01390at 273.792 kb on - strand, within CSW01_01390at 273.793 kb on - strand, within CSW01_01390at 273.793 kb on - strand, within CSW01_01390at 273.886 kb on + strand, within CSW01_01390

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep2
remove
271,328 + +0.9
271,409 - CSW01_01380 0.12 -0.1
271,421 + CSW01_01380 0.13 +0.8
271,429 - CSW01_01380 0.14 +0.4
271,443 + CSW01_01380 0.15 +0.9
271,461 - CSW01_01380 0.17 +0.6
271,506 + CSW01_01380 0.22 +1.5
271,536 + CSW01_01380 0.25 -2.3
271,544 - CSW01_01380 0.26 +1.9
271,567 + CSW01_01380 0.29 -2.0
271,567 + CSW01_01380 0.29 -0.4
271,575 - CSW01_01380 0.30 +0.6
271,622 - CSW01_01380 0.35 +0.0
271,636 + CSW01_01380 0.36 -1.3
271,636 + CSW01_01380 0.36 +0.6
271,636 + CSW01_01380 0.36 -0.6
271,636 + CSW01_01380 0.36 +0.8
271,636 + CSW01_01380 0.36 +1.2
271,644 - CSW01_01380 0.37 -0.1
271,644 - CSW01_01380 0.37 -3.2
271,644 - CSW01_01380 0.37 +0.8
271,679 - CSW01_01380 0.41 +0.9
271,686 - CSW01_01380 0.42 +0.7
271,743 - CSW01_01380 0.48 +0.4
271,768 - CSW01_01380 0.50 -0.1
271,811 - CSW01_01380 0.55 -0.6
271,857 - CSW01_01380 0.60 -0.9
271,886 + CSW01_01380 0.63 -1.9
271,898 + CSW01_01380 0.65 -0.5
271,906 - CSW01_01380 0.65 +1.1
271,919 + CSW01_01380 0.67 -2.9
271,924 + CSW01_01380 0.67 +2.0
271,924 + CSW01_01380 0.67 +1.3
271,924 + CSW01_01380 0.67 +1.2
271,932 - CSW01_01380 0.68 -0.2
271,945 + CSW01_01380 0.70 -3.1
271,945 + CSW01_01380 0.70 -0.6
271,953 - CSW01_01380 0.70 -1.2
271,966 + CSW01_01380 0.72 +1.2
271,966 + CSW01_01380 0.72 +1.0
271,966 + CSW01_01380 0.72 -1.3
271,974 - CSW01_01380 0.73 +1.0
272,000 + CSW01_01380 0.76 -0.1
272,008 - CSW01_01380 0.76 -3.0
272,008 - CSW01_01380 0.76 +1.9
272,008 - CSW01_01380 0.76 +1.1
272,056 + CSW01_01380 0.82 -1.7
272,066 + CSW01_01380 0.83 -1.0
272,066 + CSW01_01380 0.83 +0.9
272,133 - -1.9
272,181 - +0.1
272,183 - +1.8
272,285 + +0.9
272,322 - -0.3
272,327 - -1.5
272,334 + -2.1
272,342 - -4.7
272,342 - -1.3
272,377 - CSW01_01385 0.13 +0.6
272,425 + CSW01_01385 0.21 -1.1
272,434 + CSW01_01385 0.23 -0.4
272,449 + CSW01_01385 0.26 +0.9
272,449 + CSW01_01385 0.26 -2.3
272,623 - CSW01_01385 0.55 +1.1
272,688 + CSW01_01385 0.66 +1.8
272,688 + CSW01_01385 0.66 -1.0
272,694 - CSW01_01385 0.67 +1.1
272,706 - CSW01_01385 0.69 -3.3
272,747 - CSW01_01385 0.76 -2.0
272,764 + CSW01_01385 0.79 -1.3
272,764 + CSW01_01385 0.79 +0.8
272,764 + CSW01_01385 0.79 -3.2
272,772 - CSW01_01385 0.80 -1.4
272,772 - CSW01_01385 0.80 +0.7
272,813 + CSW01_01385 0.87 -0.5
272,813 + CSW01_01385 0.87 -2.9
272,821 - CSW01_01385 0.89 +0.7
272,821 - CSW01_01385 0.89 -0.5
272,837 + -1.7
272,923 - -4.4
273,058 + -1.1
273,058 + +1.7
273,058 + +1.9
273,068 + -0.4
273,076 - +0.7
273,076 - -3.2
273,086 + -0.1
273,117 - +0.3
273,246 + -1.0
273,246 + -0.5
273,254 - +2.4
273,289 + +3.5
273,289 + +3.4
273,311 + +3.6
273,311 + +3.6
273,316 + +4.5
273,316 + +4.1
273,316 + +3.4
273,316 + +2.5
273,316 + +2.4
273,319 - +4.2
273,319 - +3.2
273,324 - +4.1
273,383 + CSW01_01390 0.11 +3.2
273,383 + CSW01_01390 0.11 +3.7
273,383 + CSW01_01390 0.11 +3.7
273,391 - CSW01_01390 0.12 +3.4
273,395 + CSW01_01390 0.12 +3.6
273,395 + CSW01_01390 0.12 +3.1
273,490 + CSW01_01390 0.20 +3.2
273,490 + CSW01_01390 0.20 +3.4
273,500 - CSW01_01390 0.21 +3.4
273,507 - CSW01_01390 0.21 +3.7
273,659 + CSW01_01390 0.34 +4.2
273,659 + CSW01_01390 0.34 +3.3
273,664 + CSW01_01390 0.35 +2.8
273,667 - CSW01_01390 0.35 +2.8
273,667 - CSW01_01390 0.35 +3.0
273,667 - CSW01_01390 0.35 +3.4
273,674 + CSW01_01390 0.35 +3.1
273,674 + CSW01_01390 0.35 +3.3
273,681 - CSW01_01390 0.36 +3.9
273,709 + CSW01_01390 0.38 +3.4
273,748 - CSW01_01390 0.42 +2.7
273,782 - CSW01_01390 0.44 +3.4
273,784 + CSW01_01390 0.45 +3.5
273,785 + CSW01_01390 0.45 +3.1
273,792 - CSW01_01390 0.45 +2.5
273,793 - CSW01_01390 0.45 +3.9
273,793 - CSW01_01390 0.45 +2.6
273,886 + CSW01_01390 0.53 +2.7

Or see this region's nucleotide sequence