Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01360

Experiment: ICP1_phage_235.3_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01355 and CSW01_01360 are separated by 7 nucleotidesCSW01_01360 and CSW01_01365 are separated by 142 nucleotides CSW01_01355: CSW01_01355 - UDP-glucose 4-epimerase, at 266,132 to 267,103 _01355 CSW01_01360: CSW01_01360 - sugar transferase, at 267,111 to 267,665 _01360 CSW01_01365: CSW01_01365 - MBL fold hydrolase, at 267,808 to 269,175 _01365 Position (kb) 267 268Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 266.125 kb on + strandat 266.139 kb on - strandat 266.209 kb on - strandat 266.226 kb on + strandat 266.228 kb on - strandat 266.234 kb on - strand, within CSW01_01355at 266.268 kb on + strand, within CSW01_01355at 266.286 kb on - strand, within CSW01_01355at 266.306 kb on + strand, within CSW01_01355at 266.314 kb on - strand, within CSW01_01355at 266.318 kb on + strand, within CSW01_01355at 266.319 kb on - strand, within CSW01_01355at 266.345 kb on - strand, within CSW01_01355at 266.366 kb on - strand, within CSW01_01355at 266.391 kb on + strand, within CSW01_01355at 266.407 kb on - strand, within CSW01_01355at 266.417 kb on + strand, within CSW01_01355at 266.460 kb on - strand, within CSW01_01355at 266.509 kb on + strand, within CSW01_01355at 266.509 kb on + strand, within CSW01_01355at 266.509 kb on + strand, within CSW01_01355at 266.517 kb on - strand, within CSW01_01355at 266.548 kb on + strand, within CSW01_01355at 266.553 kb on + strand, within CSW01_01355at 266.553 kb on + strand, within CSW01_01355at 266.561 kb on - strand, within CSW01_01355at 266.577 kb on + strand, within CSW01_01355at 266.588 kb on + strand, within CSW01_01355at 266.648 kb on + strand, within CSW01_01355at 266.648 kb on + strand, within CSW01_01355at 266.656 kb on - strand, within CSW01_01355at 266.657 kb on - strand, within CSW01_01355at 266.661 kb on + strand, within CSW01_01355at 266.668 kb on + strand, within CSW01_01355at 266.668 kb on + strand, within CSW01_01355at 266.676 kb on - strand, within CSW01_01355at 266.676 kb on - strand, within CSW01_01355at 266.676 kb on - strand, within CSW01_01355at 266.676 kb on - strand, within CSW01_01355at 266.686 kb on - strand, within CSW01_01355at 266.717 kb on + strand, within CSW01_01355at 266.751 kb on - strand, within CSW01_01355at 266.763 kb on - strand, within CSW01_01355at 266.803 kb on + strand, within CSW01_01355at 266.803 kb on + strand, within CSW01_01355at 266.811 kb on - strand, within CSW01_01355at 266.866 kb on + strand, within CSW01_01355at 266.874 kb on - strand, within CSW01_01355at 266.883 kb on + strand, within CSW01_01355at 266.935 kb on - strand, within CSW01_01355at 266.937 kb on + strand, within CSW01_01355at 266.940 kb on - strand, within CSW01_01355at 266.959 kb on + strand, within CSW01_01355at 266.966 kb on - strand, within CSW01_01355at 266.966 kb on - strand, within CSW01_01355at 266.966 kb on - strand, within CSW01_01355at 266.977 kb on + strand, within CSW01_01355at 266.977 kb on + strand, within CSW01_01355at 267.020 kb on + strandat 267.063 kb on - strandat 267.150 kb on + strandat 267.150 kb on + strandat 267.158 kb on - strandat 267.161 kb on + strandat 267.169 kb on - strand, within CSW01_01360at 267.169 kb on - strand, within CSW01_01360at 267.171 kb on + strand, within CSW01_01360at 267.173 kb on + strand, within CSW01_01360at 267.179 kb on - strand, within CSW01_01360at 267.256 kb on + strand, within CSW01_01360at 267.256 kb on + strand, within CSW01_01360at 267.256 kb on + strand, within CSW01_01360at 267.264 kb on - strand, within CSW01_01360at 267.264 kb on - strand, within CSW01_01360at 267.305 kb on - strand, within CSW01_01360at 267.384 kb on + strand, within CSW01_01360at 267.415 kb on + strand, within CSW01_01360at 267.421 kb on - strand, within CSW01_01360at 267.423 kb on - strand, within CSW01_01360at 267.537 kb on - strand, within CSW01_01360at 267.612 kb on - strandat 267.627 kb on + strandat 267.653 kb on + strandat 267.687 kb on - strandat 267.689 kb on + strandat 267.705 kb on - strandat 267.721 kb on + strandat 267.738 kb on + strandat 267.813 kb on + strandat 267.815 kb on + strandat 267.828 kb on + strandat 267.836 kb on - strandat 267.836 kb on - strandat 267.836 kb on - strandat 267.878 kb on + strandat 267.880 kb on + strandat 267.886 kb on - strandat 267.906 kb on - strandat 267.970 kb on - strand, within CSW01_01365at 267.975 kb on + strand, within CSW01_01365at 267.975 kb on + strand, within CSW01_01365at 267.989 kb on + strand, within CSW01_01365at 267.990 kb on - strand, within CSW01_01365at 267.990 kb on - strand, within CSW01_01365at 267.999 kb on + strand, within CSW01_01365at 268.006 kb on - strand, within CSW01_01365at 268.019 kb on + strand, within CSW01_01365at 268.020 kb on - strand, within CSW01_01365at 268.025 kb on - strand, within CSW01_01365at 268.025 kb on - strand, within CSW01_01365at 268.025 kb on - strand, within CSW01_01365at 268.025 kb on - strand, within CSW01_01365at 268.033 kb on + strand, within CSW01_01365at 268.044 kb on + strand, within CSW01_01365at 268.076 kb on + strand, within CSW01_01365at 268.076 kb on + strand, within CSW01_01365at 268.076 kb on + strand, within CSW01_01365at 268.084 kb on - strand, within CSW01_01365at 268.084 kb on - strand, within CSW01_01365at 268.110 kb on + strand, within CSW01_01365at 268.150 kb on - strand, within CSW01_01365at 268.166 kb on + strand, within CSW01_01365at 268.174 kb on - strand, within CSW01_01365at 268.174 kb on - strand, within CSW01_01365at 268.174 kb on - strand, within CSW01_01365at 268.174 kb on - strand, within CSW01_01365at 268.174 kb on - strand, within CSW01_01365at 268.174 kb on - strand, within CSW01_01365at 268.205 kb on - strand, within CSW01_01365at 268.243 kb on - strand, within CSW01_01365at 268.248 kb on + strand, within CSW01_01365at 268.256 kb on - strand, within CSW01_01365at 268.342 kb on + strand, within CSW01_01365at 268.455 kb on + strand, within CSW01_01365at 268.455 kb on + strand, within CSW01_01365at 268.460 kb on + strand, within CSW01_01365at 268.460 kb on + strand, within CSW01_01365at 268.462 kb on + strand, within CSW01_01365at 268.462 kb on + strand, within CSW01_01365at 268.462 kb on + strand, within CSW01_01365at 268.465 kb on + strand, within CSW01_01365at 268.465 kb on + strand, within CSW01_01365at 268.465 kb on + strand, within CSW01_01365at 268.468 kb on - strand, within CSW01_01365at 268.468 kb on - strand, within CSW01_01365at 268.472 kb on + strand, within CSW01_01365at 268.478 kb on - strand, within CSW01_01365at 268.478 kb on - strand, within CSW01_01365at 268.480 kb on - strand, within CSW01_01365at 268.480 kb on - strand, within CSW01_01365at 268.480 kb on - strand, within CSW01_01365at 268.480 kb on - strand, within CSW01_01365at 268.572 kb on + strand, within CSW01_01365at 268.577 kb on + strand, within CSW01_01365at 268.577 kb on + strand, within CSW01_01365at 268.590 kb on + strand, within CSW01_01365

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep2
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266,125 + +0.1
266,139 - -2.9
266,209 - -1.9
266,226 + -2.1
266,228 - -0.4
266,234 - CSW01_01355 0.10 +1.2
266,268 + CSW01_01355 0.14 +1.5
266,286 - CSW01_01355 0.16 -0.4
266,306 + CSW01_01355 0.18 +2.4
266,314 - CSW01_01355 0.19 +1.3
266,318 + CSW01_01355 0.19 +0.8
266,319 - CSW01_01355 0.19 +1.2
266,345 - CSW01_01355 0.22 +0.2
266,366 - CSW01_01355 0.24 +1.1
266,391 + CSW01_01355 0.27 +0.9
266,407 - CSW01_01355 0.28 +1.7
266,417 + CSW01_01355 0.29 -1.0
266,460 - CSW01_01355 0.34 +0.1
266,509 + CSW01_01355 0.39 +0.7
266,509 + CSW01_01355 0.39 +0.5
266,509 + CSW01_01355 0.39 +0.5
266,517 - CSW01_01355 0.40 -3.7
266,548 + CSW01_01355 0.43 -2.3
266,553 + CSW01_01355 0.43 -1.2
266,553 + CSW01_01355 0.43 -3.6
266,561 - CSW01_01355 0.44 +0.6
266,577 + CSW01_01355 0.46 +0.9
266,588 + CSW01_01355 0.47 +1.8
266,648 + CSW01_01355 0.53 +1.2
266,648 + CSW01_01355 0.53 +1.4
266,656 - CSW01_01355 0.54 -2.0
266,657 - CSW01_01355 0.54 +1.5
266,661 + CSW01_01355 0.54 -0.8
266,668 + CSW01_01355 0.55 -2.5
266,668 + CSW01_01355 0.55 +0.1
266,676 - CSW01_01355 0.56 -2.5
266,676 - CSW01_01355 0.56 -1.9
266,676 - CSW01_01355 0.56 -2.3
266,676 - CSW01_01355 0.56 -2.0
266,686 - CSW01_01355 0.57 -1.0
266,717 + CSW01_01355 0.60 -2.2
266,751 - CSW01_01355 0.64 +0.3
266,763 - CSW01_01355 0.65 +0.3
266,803 + CSW01_01355 0.69 +0.4
266,803 + CSW01_01355 0.69 -0.8
266,811 - CSW01_01355 0.70 +0.7
266,866 + CSW01_01355 0.76 +0.4
266,874 - CSW01_01355 0.76 -3.3
266,883 + CSW01_01355 0.77 +0.9
266,935 - CSW01_01355 0.83 +0.3
266,937 + CSW01_01355 0.83 +0.9
266,940 - CSW01_01355 0.83 +0.2
266,959 + CSW01_01355 0.85 +0.9
266,966 - CSW01_01355 0.86 -0.1
266,966 - CSW01_01355 0.86 +1.8
266,966 - CSW01_01355 0.86 +0.3
266,977 + CSW01_01355 0.87 +3.2
266,977 + CSW01_01355 0.87 -0.2
267,020 + +1.1
267,063 - +3.3
267,150 + +4.9
267,150 + +5.0
267,158 - +6.0
267,161 + +4.7
267,169 - CSW01_01360 0.10 +4.6
267,169 - CSW01_01360 0.10 +4.8
267,171 + CSW01_01360 0.11 +5.0
267,173 + CSW01_01360 0.11 +4.8
267,179 - CSW01_01360 0.12 +4.5
267,256 + CSW01_01360 0.26 +4.9
267,256 + CSW01_01360 0.26 +5.2
267,256 + CSW01_01360 0.26 +5.0
267,264 - CSW01_01360 0.28 +3.9
267,264 - CSW01_01360 0.28 +5.0
267,305 - CSW01_01360 0.35 +5.0
267,384 + CSW01_01360 0.49 +5.1
267,415 + CSW01_01360 0.55 +4.7
267,421 - CSW01_01360 0.56 +5.1
267,423 - CSW01_01360 0.56 +5.2
267,537 - CSW01_01360 0.77 +4.5
267,612 - +5.1
267,627 + +5.0
267,653 + +4.6
267,687 - +0.9
267,689 + +1.9
267,705 - +0.5
267,721 + +1.4
267,738 + -2.2
267,813 + +0.6
267,815 + +0.3
267,828 + +0.2
267,836 - -1.8
267,836 - -0.8
267,836 - +1.8
267,878 + -2.2
267,880 + -0.1
267,886 - -2.4
267,906 - -0.0
267,970 - CSW01_01365 0.12 -3.0
267,975 + CSW01_01365 0.12 +0.6
267,975 + CSW01_01365 0.12 -3.6
267,989 + CSW01_01365 0.13 +0.2
267,990 - CSW01_01365 0.13 +0.0
267,990 - CSW01_01365 0.13 +1.9
267,999 + CSW01_01365 0.14 +0.8
268,006 - CSW01_01365 0.14 +0.2
268,019 + CSW01_01365 0.15 +0.2
268,020 - CSW01_01365 0.15 -3.4
268,025 - CSW01_01365 0.16 -0.2
268,025 - CSW01_01365 0.16 -2.2
268,025 - CSW01_01365 0.16 +0.6
268,025 - CSW01_01365 0.16 +0.9
268,033 + CSW01_01365 0.16 +1.2
268,044 + CSW01_01365 0.17 -2.9
268,076 + CSW01_01365 0.20 +0.4
268,076 + CSW01_01365 0.20 +0.6
268,076 + CSW01_01365 0.20 +0.8
268,084 - CSW01_01365 0.20 +1.2
268,084 - CSW01_01365 0.20 -0.3
268,110 + CSW01_01365 0.22 -3.6
268,150 - CSW01_01365 0.25 +0.2
268,166 + CSW01_01365 0.26 -1.7
268,174 - CSW01_01365 0.27 +0.5
268,174 - CSW01_01365 0.27 +1.7
268,174 - CSW01_01365 0.27 -1.1
268,174 - CSW01_01365 0.27 -0.1
268,174 - CSW01_01365 0.27 +0.2
268,174 - CSW01_01365 0.27 -0.1
268,205 - CSW01_01365 0.29 -3.1
268,243 - CSW01_01365 0.32 +1.0
268,248 + CSW01_01365 0.32 -0.1
268,256 - CSW01_01365 0.33 -0.1
268,342 + CSW01_01365 0.39 -2.5
268,455 + CSW01_01365 0.47 -2.7
268,455 + CSW01_01365 0.47 -1.3
268,460 + CSW01_01365 0.48 -2.1
268,460 + CSW01_01365 0.48 +1.3
268,462 + CSW01_01365 0.48 +0.3
268,462 + CSW01_01365 0.48 +0.7
268,462 + CSW01_01365 0.48 -2.5
268,465 + CSW01_01365 0.48 +0.7
268,465 + CSW01_01365 0.48 +0.1
268,465 + CSW01_01365 0.48 +1.0
268,468 - CSW01_01365 0.48 -1.3
268,468 - CSW01_01365 0.48 +1.6
268,472 + CSW01_01365 0.49 -0.4
268,478 - CSW01_01365 0.49 +0.2
268,478 - CSW01_01365 0.49 -2.7
268,480 - CSW01_01365 0.49 -1.7
268,480 - CSW01_01365 0.49 +0.8
268,480 - CSW01_01365 0.49 -0.9
268,480 - CSW01_01365 0.49 +1.1
268,572 + CSW01_01365 0.56 +0.8
268,577 + CSW01_01365 0.56 -2.8
268,577 + CSW01_01365 0.56 +0.3
268,590 + CSW01_01365 0.57 -0.9

Or see this region's nucleotide sequence