Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01335

Experiment: ICP1_phage_235.3_MOI_rep2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_01325 and CSW01_01330 are separated by 99 nucleotidesCSW01_01330 and CSW01_01335 are separated by 147 nucleotidesCSW01_01335 and CSW01_01340 are separated by 177 nucleotides CSW01_01325: CSW01_01325 - acetyltransferase, at 259,840 to 260,406 _01325 CSW01_01330: CSW01_01330 - oxidoreductase, at 260,506 to 260,646 _01330 CSW01_01335: CSW01_01335 - ISAs1 family transposase, at 260,794 to 261,921 _01335 CSW01_01340: CSW01_01340 - RfbT protein, at 262,099 to 262,959 _01340 Position (kb) 260 261 262Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4 5 6at 259.870 kb on - strandat 259.926 kb on + strand, within CSW01_01325at 259.968 kb on + strand, within CSW01_01325at 260.037 kb on - strand, within CSW01_01325at 260.045 kb on - strand, within CSW01_01325at 260.450 kb on - strandat 260.623 kb on + strand, within CSW01_01330at 260.629 kb on + strand, within CSW01_01330at 260.662 kb on - strandat 260.702 kb on + strandat 260.765 kb on - strandat 260.868 kb on - strandat 260.897 kb on + strandat 260.922 kb on - strand, within CSW01_01335at 260.985 kb on + strand, within CSW01_01335at 260.985 kb on + strand, within CSW01_01335at 260.985 kb on + strand, within CSW01_01335at 261.086 kb on + strand, within CSW01_01335at 261.086 kb on + strand, within CSW01_01335at 261.086 kb on + strand, within CSW01_01335at 261.086 kb on + strand, within CSW01_01335at 261.086 kb on + strand, within CSW01_01335at 261.094 kb on - strand, within CSW01_01335at 261.094 kb on - strand, within CSW01_01335at 261.148 kb on - strand, within CSW01_01335at 261.151 kb on - strand, within CSW01_01335at 261.196 kb on - strand, within CSW01_01335at 261.286 kb on + strand, within CSW01_01335at 261.286 kb on + strand, within CSW01_01335at 261.294 kb on - strand, within CSW01_01335at 261.393 kb on + strand, within CSW01_01335at 261.617 kb on - strand, within CSW01_01335at 261.667 kb on + strand, within CSW01_01335at 261.692 kb on + strand, within CSW01_01335at 261.700 kb on - strand, within CSW01_01335at 261.705 kb on - strand, within CSW01_01335at 261.711 kb on - strand, within CSW01_01335at 261.712 kb on - strand, within CSW01_01335at 261.764 kb on + strand, within CSW01_01335at 261.771 kb on + strand, within CSW01_01335at 261.778 kb on + strand, within CSW01_01335at 261.783 kb on + strand, within CSW01_01335at 261.837 kb on + strandat 261.837 kb on + strandat 261.870 kb on - strandat 261.896 kb on - strandat 261.911 kb on + strandat 261.912 kb on - strandat 261.931 kb on - strandat 261.954 kb on - strandat 262.016 kb on + strandat 262.016 kb on + strandat 262.146 kb on + strandat 262.161 kb on + strandat 262.161 kb on + strandat 262.161 kb on + strandat 262.161 kb on + strandat 262.161 kb on + strandat 262.161 kb on + strandat 262.161 kb on + strandat 262.161 kb on + strandat 262.169 kb on - strandat 262.169 kb on - strandat 262.169 kb on - strandat 262.250 kb on + strand, within CSW01_01340at 262.257 kb on + strand, within CSW01_01340at 262.258 kb on - strand, within CSW01_01340at 262.258 kb on - strand, within CSW01_01340at 262.282 kb on + strand, within CSW01_01340at 262.285 kb on - strand, within CSW01_01340at 262.299 kb on + strand, within CSW01_01340at 262.307 kb on - strand, within CSW01_01340at 262.340 kb on - strand, within CSW01_01340at 262.343 kb on + strand, within CSW01_01340at 262.365 kb on + strand, within CSW01_01340at 262.373 kb on - strand, within CSW01_01340at 262.373 kb on - strand, within CSW01_01340at 262.373 kb on - strand, within CSW01_01340at 262.405 kb on - strand, within CSW01_01340at 262.459 kb on - strand, within CSW01_01340at 262.506 kb on - strand, within CSW01_01340at 262.554 kb on - strand, within CSW01_01340at 262.657 kb on - strand, within CSW01_01340at 262.795 kb on + strand, within CSW01_01340at 262.798 kb on - strand, within CSW01_01340at 262.891 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep2
remove
259,870 - +5.5
259,926 + CSW01_01325 0.15 +5.4
259,968 + CSW01_01325 0.23 +5.3
260,037 - CSW01_01325 0.35 +6.0
260,045 - CSW01_01325 0.36 +4.7
260,450 - -0.1
260,623 + CSW01_01330 0.83 -0.3
260,629 + CSW01_01330 0.87 +0.0
260,662 - +0.1
260,702 + +1.6
260,765 - +2.4
260,868 - -0.1
260,897 + +0.1
260,922 - CSW01_01335 0.11 -2.6
260,985 + CSW01_01335 0.17 +0.1
260,985 + CSW01_01335 0.17 -5.1
260,985 + CSW01_01335 0.17 +0.2
261,086 + CSW01_01335 0.26 -0.6
261,086 + CSW01_01335 0.26 -1.3
261,086 + CSW01_01335 0.26 -1.0
261,086 + CSW01_01335 0.26 +0.2
261,086 + CSW01_01335 0.26 -0.6
261,094 - CSW01_01335 0.27 +0.6
261,094 - CSW01_01335 0.27 -2.5
261,148 - CSW01_01335 0.31 -0.0
261,151 - CSW01_01335 0.32 -2.9
261,196 - CSW01_01335 0.36 -2.3
261,286 + CSW01_01335 0.44 +0.2
261,286 + CSW01_01335 0.44 +0.1
261,294 - CSW01_01335 0.44 -3.5
261,393 + CSW01_01335 0.53 +0.4
261,617 - CSW01_01335 0.73 +0.0
261,667 + CSW01_01335 0.77 -2.7
261,692 + CSW01_01335 0.80 -3.7
261,700 - CSW01_01335 0.80 -0.6
261,705 - CSW01_01335 0.81 +1.0
261,711 - CSW01_01335 0.81 -2.9
261,712 - CSW01_01335 0.81 +0.9
261,764 + CSW01_01335 0.86 -1.9
261,771 + CSW01_01335 0.87 +0.3
261,778 + CSW01_01335 0.87 -0.3
261,783 + CSW01_01335 0.88 +2.3
261,837 + -4.4
261,837 + -1.0
261,870 - -0.3
261,896 - -2.7
261,911 + +1.0
261,912 - -0.7
261,931 - +1.1
261,954 - +0.5
262,016 + -0.8
262,016 + -1.0
262,146 + +1.3
262,161 + -0.7
262,161 + -1.2
262,161 + -0.3
262,161 + -0.6
262,161 + -4.3
262,161 + -3.8
262,161 + +0.1
262,161 + +0.4
262,169 - +1.5
262,169 - -1.6
262,169 - -1.2
262,250 + CSW01_01340 0.18 +1.4
262,257 + CSW01_01340 0.18 +1.0
262,258 - CSW01_01340 0.18 +2.2
262,258 - CSW01_01340 0.18 +1.8
262,282 + CSW01_01340 0.21 +1.2
262,285 - CSW01_01340 0.22 -1.3
262,299 + CSW01_01340 0.23 -1.7
262,307 - CSW01_01340 0.24 -0.7
262,340 - CSW01_01340 0.28 +1.9
262,343 + CSW01_01340 0.28 +0.4
262,365 + CSW01_01340 0.31 -0.1
262,373 - CSW01_01340 0.32 +0.4
262,373 - CSW01_01340 0.32 +1.7
262,373 - CSW01_01340 0.32 +1.2
262,405 - CSW01_01340 0.36 -0.6
262,459 - CSW01_01340 0.42 -0.8
262,506 - CSW01_01340 0.47 -0.7
262,554 - CSW01_01340 0.53 -0.1
262,657 - CSW01_01340 0.65 -0.6
262,795 + CSW01_01340 0.81 -2.0
262,798 - CSW01_01340 0.81 +0.7
262,891 + -3.4

Or see this region's nucleotide sequence