Experiment: ICP1_phage_235.3_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_01260 and CSW01_01265 are separated by 158 nucleotides CSW01_01265 and CSW01_01270 are separated by 441 nucleotides
CSW01_01260: CSW01_01260 - polysaccharide deacetylase, at 243,213 to 244,985
_01260
CSW01_01265: CSW01_01265 - ADP-L-glycero-D-mannoheptose-6-epimerase, at 245,144 to 246,088
_01265
CSW01_01270: CSW01_01270 - mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase, at 246,530 to 247,927
_01270
Position (kb) 245
246
247 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 244.160 kb on + strand, within CSW01_01260 at 244.168 kb on - strand, within CSW01_01260 at 244.227 kb on + strand, within CSW01_01260 at 244.290 kb on - strand, within CSW01_01260 at 244.329 kb on + strand, within CSW01_01260 at 244.337 kb on - strand, within CSW01_01260 at 244.367 kb on - strand, within CSW01_01260 at 244.369 kb on - strand, within CSW01_01260 at 244.374 kb on + strand, within CSW01_01260 at 244.374 kb on + strand, within CSW01_01260 at 244.374 kb on - strand, within CSW01_01260 at 244.382 kb on - strand, within CSW01_01260 at 244.384 kb on - strand, within CSW01_01260 at 244.397 kb on + strand, within CSW01_01260 at 244.397 kb on + strand, within CSW01_01260 at 244.435 kb on + strand, within CSW01_01260 at 244.435 kb on + strand, within CSW01_01260 at 244.550 kb on - strand, within CSW01_01260 at 244.556 kb on - strand, within CSW01_01260 at 244.558 kb on + strand, within CSW01_01260 at 244.591 kb on - strand, within CSW01_01260 at 244.662 kb on + strand, within CSW01_01260 at 244.662 kb on + strand, within CSW01_01260 at 244.687 kb on - strand, within CSW01_01260 at 244.748 kb on - strand, within CSW01_01260 at 244.750 kb on + strand, within CSW01_01260 at 244.750 kb on + strand, within CSW01_01260 at 244.754 kb on - strand, within CSW01_01260 at 244.773 kb on - strand, within CSW01_01260 at 244.851 kb on + strand at 244.866 kb on - strand at 244.868 kb on + strand at 244.905 kb on + strand at 244.913 kb on - strand at 244.917 kb on + strand at 244.937 kb on + strand at 244.945 kb on - strand at 244.962 kb on + strand at 244.962 kb on + strand at 244.970 kb on - strand at 245.024 kb on - strand at 245.100 kb on - strand at 245.112 kb on + strand at 245.119 kb on + strand at 245.119 kb on + strand at 245.127 kb on + strand at 245.127 kb on - strand at 245.128 kb on + strand at 245.129 kb on + strand at 245.129 kb on + strand at 245.129 kb on + strand at 245.129 kb on + strand at 245.129 kb on + strand at 245.129 kb on + strand at 245.129 kb on + strand at 245.129 kb on + strand at 245.129 kb on + strand at 245.129 kb on + strand at 245.129 kb on + strand at 245.129 kb on + strand at 245.129 kb on + strand at 245.129 kb on + strand at 245.129 kb on + strand at 245.129 kb on + strand at 245.129 kb on + strand at 245.129 kb on + strand at 245.129 kb on + strand at 245.129 kb on + strand at 245.129 kb on + strand at 245.129 kb on + strand at 245.129 kb on + strand at 245.136 kb on - strand at 245.137 kb on - strand at 245.137 kb on - strand at 245.137 kb on - strand at 245.137 kb on - strand at 245.137 kb on - strand at 245.137 kb on - strand at 245.137 kb on - strand at 245.137 kb on - strand at 245.137 kb on - strand at 245.137 kb on - strand at 245.137 kb on - strand at 245.137 kb on - strand at 245.137 kb on - strand at 245.137 kb on - strand at 245.137 kb on - strand at 245.137 kb on - strand at 245.137 kb on - strand at 245.137 kb on - strand at 245.137 kb on - strand at 245.137 kb on - strand at 245.137 kb on - strand at 245.137 kb on - strand at 245.137 kb on - strand at 245.137 kb on - strand at 245.137 kb on - strand at 245.137 kb on - strand at 245.137 kb on - strand at 245.137 kb on - strand at 245.137 kb on - strand at 245.151 kb on + strand at 245.193 kb on + strand at 245.193 kb on + strand at 245.193 kb on + strand at 245.201 kb on - strand at 245.201 kb on - strand at 245.201 kb on - strand at 245.236 kb on + strand at 245.265 kb on + strand, within CSW01_01265 at 245.273 kb on - strand, within CSW01_01265 at 245.273 kb on - strand, within CSW01_01265 at 245.273 kb on - strand, within CSW01_01265 at 245.273 kb on - strand, within CSW01_01265 at 245.273 kb on - strand, within CSW01_01265 at 245.291 kb on + strand, within CSW01_01265 at 245.291 kb on + strand, within CSW01_01265 at 245.291 kb on + strand, within CSW01_01265 at 245.291 kb on + strand, within CSW01_01265 at 245.299 kb on - strand, within CSW01_01265 at 245.328 kb on + strand, within CSW01_01265 at 245.378 kb on - strand, within CSW01_01265 at 245.538 kb on + strand, within CSW01_01265 at 245.575 kb on + strand, within CSW01_01265 at 245.609 kb on - strand, within CSW01_01265 at 245.727 kb on + strand, within CSW01_01265 at 245.761 kb on - strand, within CSW01_01265 at 245.781 kb on - strand, within CSW01_01265 at 245.791 kb on + strand, within CSW01_01265 at 245.809 kb on - strand, within CSW01_01265 at 245.912 kb on - strand, within CSW01_01265 at 245.917 kb on - strand, within CSW01_01265 at 246.028 kb on + strand at 246.036 kb on - strand at 246.111 kb on - strand at 246.121 kb on + strand at 246.121 kb on + strand at 246.129 kb on - strand at 246.129 kb on - strand at 246.156 kb on + strand at 246.200 kb on + strand at 246.208 kb on - strand at 246.265 kb on - strand at 246.270 kb on - strand at 246.282 kb on + strand at 246.282 kb on + strand at 246.282 kb on + strand at 246.287 kb on + strand at 246.287 kb on + strand at 246.292 kb on - strand at 246.305 kb on - strand at 246.317 kb on - strand at 246.350 kb on + strand at 246.351 kb on + strand at 246.368 kb on + strand at 246.395 kb on - strand at 246.532 kb on + strand at 246.564 kb on + strand at 246.564 kb on + strand at 246.564 kb on + strand at 246.564 kb on + strand at 246.564 kb on + strand at 246.564 kb on + strand at 246.564 kb on + strand at 246.564 kb on + strand at 246.564 kb on + strand at 246.572 kb on - strand at 246.572 kb on - strand at 246.572 kb on - strand at 246.572 kb on - strand at 246.572 kb on - strand at 246.572 kb on - strand at 246.572 kb on - strand at 246.587 kb on + strand at 246.588 kb on - strand at 246.624 kb on + strand at 246.629 kb on + strand at 246.684 kb on - strand, within CSW01_01270 at 246.765 kb on - strand, within CSW01_01270 at 246.790 kb on - strand, within CSW01_01270 at 246.790 kb on - strand, within CSW01_01270 at 246.794 kb on + strand, within CSW01_01270 at 246.794 kb on - strand, within CSW01_01270 at 246.920 kb on + strand, within CSW01_01270 at 246.928 kb on + strand, within CSW01_01270 at 246.928 kb on + strand, within CSW01_01270 at 246.928 kb on + strand, within CSW01_01270 at 246.928 kb on + strand, within CSW01_01270 at 246.928 kb on - strand, within CSW01_01270 at 246.936 kb on - strand, within CSW01_01270 at 246.936 kb on - strand, within CSW01_01270 at 246.936 kb on - strand, within CSW01_01270 at 246.991 kb on - strand, within CSW01_01270 at 246.991 kb on - strand, within CSW01_01270 at 246.991 kb on - strand, within CSW01_01270 at 247.011 kb on + strand, within CSW01_01270 at 247.011 kb on + strand, within CSW01_01270 at 247.012 kb on + strand, within CSW01_01270 at 247.012 kb on + strand, within CSW01_01270 at 247.013 kb on - strand, within CSW01_01270 at 247.019 kb on - strand, within CSW01_01270 at 247.019 kb on - strand, within CSW01_01270 at 247.068 kb on - strand, within CSW01_01270 at 247.087 kb on - strand, within CSW01_01270
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep2 remove 244,160 + CSW01_01260 0.53 +4.0 244,168 - CSW01_01260 0.54 +4.6 244,227 + CSW01_01260 0.57 +5.0 244,290 - CSW01_01260 0.61 +4.9 244,329 + CSW01_01260 0.63 +4.6 244,337 - CSW01_01260 0.63 +4.5 244,367 - CSW01_01260 0.65 +5.2 244,369 - CSW01_01260 0.65 +5.0 244,374 + CSW01_01260 0.65 +3.7 244,374 + CSW01_01260 0.65 +4.4 244,374 - CSW01_01260 0.65 +4.4 244,382 - CSW01_01260 0.66 +5.0 244,384 - CSW01_01260 0.66 +5.3 244,397 + CSW01_01260 0.67 +4.7 244,397 + CSW01_01260 0.67 +4.8 244,435 + CSW01_01260 0.69 +3.8 244,435 + CSW01_01260 0.69 +4.5 244,550 - CSW01_01260 0.75 +4.6 244,556 - CSW01_01260 0.76 +4.3 244,558 + CSW01_01260 0.76 +4.5 244,591 - CSW01_01260 0.78 +4.6 244,662 + CSW01_01260 0.82 +5.4 244,662 + CSW01_01260 0.82 +5.3 244,687 - CSW01_01260 0.83 +4.9 244,748 - CSW01_01260 0.87 +5.1 244,750 + CSW01_01260 0.87 +4.6 244,750 + CSW01_01260 0.87 +3.9 244,754 - CSW01_01260 0.87 +5.5 244,773 - CSW01_01260 0.88 +5.3 244,851 + +5.2 244,866 - +4.8 244,868 + +5.2 244,905 + +5.1 244,913 - +4.8 244,917 + +4.6 244,937 + +4.1 244,945 - +4.8 244,962 + +4.4 244,962 + +5.1 244,970 - +5.1 245,024 - +0.8 245,100 - +1.3 245,112 + +4.6 245,119 + +4.7 245,119 + +4.6 245,127 + +3.6 245,127 - +0.9 245,128 + +4.4 245,129 + +4.2 245,129 + +3.6 245,129 + +4.4 245,129 + +4.4 245,129 + +4.4 245,129 + +4.4 245,129 + +4.5 245,129 + +4.9 245,129 + +4.3 245,129 + +4.4 245,129 + +5.1 245,129 + +4.4 245,129 + +4.8 245,129 + +4.1 245,129 + +4.7 245,129 + +4.6 245,129 + +4.7 245,129 + +4.3 245,129 + +4.2 245,129 + +4.4 245,129 + +4.0 245,129 + +4.7 245,129 + +4.2 245,136 - +0.8 245,137 - +0.3 245,137 - +1.3 245,137 - -3.7 245,137 - -1.7 245,137 - -0.2 245,137 - +0.3 245,137 - -0.1 245,137 - -0.7 245,137 - -0.4 245,137 - +0.3 245,137 - +0.3 245,137 - +0.9 245,137 - +0.6 245,137 - -4.1 245,137 - +0.4 245,137 - +1.1 245,137 - +1.1 245,137 - -3.6 245,137 - -1.0 245,137 - -3.5 245,137 - +1.3 245,137 - +0.4 245,137 - -0.6 245,137 - +0.7 245,137 - -0.5 245,137 - +1.1 245,137 - -0.1 245,137 - +0.0 245,137 - -1.5 245,151 + +2.3 245,193 + +2.1 245,193 + +2.7 245,193 + +3.3 245,201 - +4.6 245,201 - +3.7 245,201 - +2.9 245,236 + +3.1 245,265 + CSW01_01265 0.13 +3.8 245,273 - CSW01_01265 0.14 +1.3 245,273 - CSW01_01265 0.14 +3.4 245,273 - CSW01_01265 0.14 +1.3 245,273 - CSW01_01265 0.14 +2.5 245,273 - CSW01_01265 0.14 +0.0 245,291 + CSW01_01265 0.16 +3.2 245,291 + CSW01_01265 0.16 +5.3 245,291 + CSW01_01265 0.16 +3.5 245,291 + CSW01_01265 0.16 +3.8 245,299 - CSW01_01265 0.16 +2.8 245,328 + CSW01_01265 0.19 +4.1 245,378 - CSW01_01265 0.25 +2.5 245,538 + CSW01_01265 0.42 +3.8 245,575 + CSW01_01265 0.46 +4.9 245,609 - CSW01_01265 0.49 +3.1 245,727 + CSW01_01265 0.62 +4.3 245,761 - CSW01_01265 0.65 +3.1 245,781 - CSW01_01265 0.67 +2.9 245,791 + CSW01_01265 0.68 +2.9 245,809 - CSW01_01265 0.70 +2.5 245,912 - CSW01_01265 0.81 +4.5 245,917 - CSW01_01265 0.82 +4.2 246,028 + +2.3 246,036 - +2.6 246,111 - +3.2 246,121 + +0.7 246,121 + +0.7 246,129 - +0.9 246,129 - +0.2 246,156 + -1.2 246,200 + -2.8 246,208 - +3.7 246,265 - +1.6 246,270 - -4.2 246,282 + +0.5 246,282 + +1.0 246,282 + -0.6 246,287 + -0.0 246,287 + -0.4 246,292 - -2.1 246,305 - -3.6 246,317 - +2.1 246,350 + -0.3 246,351 + +0.5 246,368 + -1.9 246,395 - -0.4 246,532 + +5.0 246,564 + +5.4 246,564 + +4.9 246,564 + +5.7 246,564 + +5.3 246,564 + +5.3 246,564 + +4.7 246,564 + +4.4 246,564 + +5.6 246,564 + +5.0 246,572 - +5.1 246,572 - +5.3 246,572 - +5.8 246,572 - +5.5 246,572 - +5.4 246,572 - +5.5 246,572 - +5.8 246,587 + +4.6 246,588 - +5.4 246,624 + +5.3 246,629 + +5.0 246,684 - CSW01_01270 0.11 +5.0 246,765 - CSW01_01270 0.17 +5.3 246,790 - CSW01_01270 0.19 +5.2 246,790 - CSW01_01270 0.19 +5.0 246,794 + CSW01_01270 0.19 +4.9 246,794 - CSW01_01270 0.19 +5.5 246,920 + CSW01_01270 0.28 +5.1 246,928 + CSW01_01270 0.28 +5.6 246,928 + CSW01_01270 0.28 +5.0 246,928 + CSW01_01270 0.28 +4.9 246,928 + CSW01_01270 0.28 +4.8 246,928 - CSW01_01270 0.28 +5.5 246,936 - CSW01_01270 0.29 +4.8 246,936 - CSW01_01270 0.29 +4.6 246,936 - CSW01_01270 0.29 +5.5 246,991 - CSW01_01270 0.33 +5.2 246,991 - CSW01_01270 0.33 +5.2 246,991 - CSW01_01270 0.33 +5.0 247,011 + CSW01_01270 0.34 +4.8 247,011 + CSW01_01270 0.34 +5.1 247,012 + CSW01_01270 0.34 +5.1 247,012 + CSW01_01270 0.34 +5.0 247,013 - CSW01_01270 0.35 +4.7 247,019 - CSW01_01270 0.35 +5.2 247,019 - CSW01_01270 0.35 +5.3 247,068 - CSW01_01270 0.38 +5.4 247,087 - CSW01_01270 0.40 +5.5
Or see this region's nucleotide sequence