Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01085

Experiment: ICP1_phage_235.3_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01080 and CSW01_01085 are separated by 26 nucleotidesCSW01_01085 and CSW01_01090 are separated by 42 nucleotidesCSW01_01090 and CSW01_01095 overlap by 19 nucleotides CSW01_01080: CSW01_01080 - Fe(3+)-hydroxamate ABC transporter permease FhuB, at 210,453 to 212,414 _01080 CSW01_01085: CSW01_01085 - MurR/RpiR family transcriptional regulator, at 212,441 to 213,289 _01085 CSW01_01090: CSW01_01090 - hypothetical protein, at 213,332 to 213,523 _01090 CSW01_01095: CSW01_01095 - N-acetylmuramic acid 6-phosphate etherase, at 213,505 to 214,422 _01095 Position (kb) 212 213 214Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 211.447 kb on + strand, within CSW01_01080at 211.477 kb on - strand, within CSW01_01080at 211.482 kb on - strand, within CSW01_01080at 211.491 kb on + strand, within CSW01_01080at 211.499 kb on - strand, within CSW01_01080at 211.509 kb on + strand, within CSW01_01080at 211.509 kb on + strand, within CSW01_01080at 211.528 kb on + strand, within CSW01_01080at 211.534 kb on - strand, within CSW01_01080at 211.555 kb on + strand, within CSW01_01080at 211.580 kb on + strand, within CSW01_01080at 211.643 kb on - strand, within CSW01_01080at 211.678 kb on - strand, within CSW01_01080at 211.719 kb on - strand, within CSW01_01080at 211.743 kb on + strand, within CSW01_01080at 211.783 kb on + strand, within CSW01_01080at 211.786 kb on + strand, within CSW01_01080at 211.791 kb on + strand, within CSW01_01080at 211.793 kb on + strand, within CSW01_01080at 211.895 kb on + strand, within CSW01_01080at 211.895 kb on + strand, within CSW01_01080at 211.895 kb on + strand, within CSW01_01080at 211.895 kb on + strand, within CSW01_01080at 211.895 kb on + strand, within CSW01_01080at 211.895 kb on + strand, within CSW01_01080at 211.895 kb on + strand, within CSW01_01080at 211.895 kb on + strand, within CSW01_01080at 211.895 kb on + strand, within CSW01_01080at 211.903 kb on - strand, within CSW01_01080at 211.903 kb on - strand, within CSW01_01080at 211.903 kb on - strand, within CSW01_01080at 211.912 kb on + strand, within CSW01_01080at 211.935 kb on + strand, within CSW01_01080at 211.992 kb on - strand, within CSW01_01080at 212.001 kb on + strand, within CSW01_01080at 212.009 kb on - strand, within CSW01_01080at 212.011 kb on + strand, within CSW01_01080at 212.011 kb on + strand, within CSW01_01080at 212.019 kb on - strand, within CSW01_01080at 212.026 kb on + strand, within CSW01_01080at 212.026 kb on + strand, within CSW01_01080at 212.026 kb on + strand, within CSW01_01080at 212.026 kb on + strand, within CSW01_01080at 212.026 kb on + strand, within CSW01_01080at 212.026 kb on + strand, within CSW01_01080at 212.032 kb on - strand, within CSW01_01080at 212.034 kb on - strand, within CSW01_01080at 212.034 kb on - strand, within CSW01_01080at 212.034 kb on - strand, within CSW01_01080at 212.054 kb on - strand, within CSW01_01080at 212.059 kb on + strand, within CSW01_01080at 212.059 kb on + strand, within CSW01_01080at 212.067 kb on - strand, within CSW01_01080at 212.067 kb on - strand, within CSW01_01080at 212.067 kb on - strand, within CSW01_01080at 212.067 kb on - strand, within CSW01_01080at 212.125 kb on + strand, within CSW01_01080at 212.125 kb on + strand, within CSW01_01080at 212.132 kb on - strand, within CSW01_01080at 212.133 kb on - strand, within CSW01_01080at 212.133 kb on - strand, within CSW01_01080at 212.138 kb on + strand, within CSW01_01080at 212.153 kb on + strand, within CSW01_01080at 212.153 kb on + strand, within CSW01_01080at 212.153 kb on + strand, within CSW01_01080at 212.153 kb on + strand, within CSW01_01080at 212.153 kb on + strand, within CSW01_01080at 212.153 kb on + strand, within CSW01_01080at 212.161 kb on - strand, within CSW01_01080at 212.161 kb on - strand, within CSW01_01080at 212.161 kb on - strand, within CSW01_01080at 212.161 kb on - strand, within CSW01_01080at 212.161 kb on - strand, within CSW01_01080at 212.161 kb on - strand, within CSW01_01080at 212.161 kb on - strand, within CSW01_01080at 212.161 kb on - strand, within CSW01_01080at 212.175 kb on + strand, within CSW01_01080at 212.181 kb on + strand, within CSW01_01080at 212.273 kb on + strandat 212.291 kb on + strandat 212.293 kb on + strandat 212.305 kb on + strandat 212.305 kb on + strandat 212.310 kb on + strandat 212.329 kb on - strandat 212.417 kb on - strandat 212.422 kb on + strandat 212.422 kb on + strandat 212.422 kb on + strandat 212.422 kb on + strandat 212.445 kb on - strandat 212.452 kb on + strandat 212.503 kb on - strandat 212.506 kb on + strandat 212.509 kb on + strandat 212.509 kb on + strandat 212.509 kb on + strandat 212.509 kb on + strandat 212.517 kb on - strandat 212.551 kb on - strand, within CSW01_01085at 212.579 kb on - strand, within CSW01_01085at 212.598 kb on + strand, within CSW01_01085at 212.606 kb on - strand, within CSW01_01085at 212.606 kb on - strand, within CSW01_01085at 212.606 kb on - strand, within CSW01_01085at 212.664 kb on - strand, within CSW01_01085at 212.697 kb on - strand, within CSW01_01085at 212.746 kb on + strand, within CSW01_01085at 212.746 kb on + strand, within CSW01_01085at 212.754 kb on - strand, within CSW01_01085at 212.770 kb on - strand, within CSW01_01085at 212.787 kb on + strand, within CSW01_01085at 212.795 kb on - strand, within CSW01_01085at 212.809 kb on + strand, within CSW01_01085at 212.809 kb on + strand, within CSW01_01085at 212.820 kb on + strand, within CSW01_01085at 212.820 kb on + strand, within CSW01_01085at 212.828 kb on - strand, within CSW01_01085at 212.838 kb on - strand, within CSW01_01085at 212.857 kb on + strand, within CSW01_01085at 212.860 kb on - strand, within CSW01_01085at 212.865 kb on - strand, within CSW01_01085at 212.929 kb on + strand, within CSW01_01085at 212.970 kb on + strand, within CSW01_01085at 212.978 kb on - strand, within CSW01_01085at 213.018 kb on + strand, within CSW01_01085at 213.040 kb on - strand, within CSW01_01085at 213.040 kb on - strand, within CSW01_01085at 213.040 kb on - strand, within CSW01_01085at 213.063 kb on + strand, within CSW01_01085at 213.098 kb on + strand, within CSW01_01085at 213.149 kb on + strand, within CSW01_01085at 213.189 kb on + strand, within CSW01_01085at 213.280 kb on - strandat 213.523 kb on - strandat 213.523 kb on - strandat 213.554 kb on + strandat 213.562 kb on - strandat 213.562 kb on - strandat 213.562 kb on - strandat 213.576 kb on + strandat 213.576 kb on + strandat 213.695 kb on - strand, within CSW01_01095at 213.762 kb on + strand, within CSW01_01095at 213.792 kb on + strand, within CSW01_01095at 213.792 kb on - strand, within CSW01_01095at 213.802 kb on + strand, within CSW01_01095at 213.814 kb on + strand, within CSW01_01095at 213.827 kb on - strand, within CSW01_01095at 213.878 kb on + strand, within CSW01_01095at 213.891 kb on - strand, within CSW01_01095at 213.925 kb on + strand, within CSW01_01095at 213.929 kb on - strand, within CSW01_01095at 213.930 kb on + strand, within CSW01_01095at 213.950 kb on + strand, within CSW01_01095at 213.973 kb on + strand, within CSW01_01095at 213.974 kb on - strand, within CSW01_01095at 213.981 kb on - strand, within CSW01_01095at 213.990 kb on + strand, within CSW01_01095at 213.994 kb on + strand, within CSW01_01095at 213.996 kb on - strand, within CSW01_01095at 214.002 kb on - strand, within CSW01_01095at 214.017 kb on - strand, within CSW01_01095at 214.027 kb on - strand, within CSW01_01095at 214.052 kb on - strand, within CSW01_01095at 214.052 kb on - strand, within CSW01_01095at 214.180 kb on + strand, within CSW01_01095at 214.188 kb on - strand, within CSW01_01095at 214.188 kb on - strand, within CSW01_01095at 214.203 kb on + strand, within CSW01_01095at 214.215 kb on - strand, within CSW01_01095at 214.245 kb on + strand, within CSW01_01095at 214.264 kb on + strand, within CSW01_01095

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep2
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211,447 + CSW01_01080 0.51 +1.4
211,477 - CSW01_01080 0.52 -2.3
211,482 - CSW01_01080 0.52 -0.7
211,491 + CSW01_01080 0.53 +1.0
211,499 - CSW01_01080 0.53 +0.7
211,509 + CSW01_01080 0.54 +0.6
211,509 + CSW01_01080 0.54 +3.6
211,528 + CSW01_01080 0.55 -0.6
211,534 - CSW01_01080 0.55 +0.5
211,555 + CSW01_01080 0.56 +0.1
211,580 + CSW01_01080 0.57 +1.4
211,643 - CSW01_01080 0.61 +0.2
211,678 - CSW01_01080 0.62 -0.0
211,719 - CSW01_01080 0.65 -4.2
211,743 + CSW01_01080 0.66 -2.1
211,783 + CSW01_01080 0.68 -1.1
211,786 + CSW01_01080 0.68 -1.6
211,791 + CSW01_01080 0.68 +0.0
211,793 + CSW01_01080 0.68 -0.7
211,895 + CSW01_01080 0.73 +0.8
211,895 + CSW01_01080 0.73 +0.1
211,895 + CSW01_01080 0.73 -0.6
211,895 + CSW01_01080 0.73 -0.7
211,895 + CSW01_01080 0.73 +0.9
211,895 + CSW01_01080 0.73 -2.0
211,895 + CSW01_01080 0.73 +1.3
211,895 + CSW01_01080 0.73 +0.1
211,895 + CSW01_01080 0.73 +1.7
211,903 - CSW01_01080 0.74 -1.9
211,903 - CSW01_01080 0.74 -2.0
211,903 - CSW01_01080 0.74 -0.2
211,912 + CSW01_01080 0.74 -1.4
211,935 + CSW01_01080 0.76 -3.3
211,992 - CSW01_01080 0.78 -0.2
212,001 + CSW01_01080 0.79 +2.0
212,009 - CSW01_01080 0.79 +2.4
212,011 + CSW01_01080 0.79 +0.1
212,011 + CSW01_01080 0.79 +0.6
212,019 - CSW01_01080 0.80 -0.3
212,026 + CSW01_01080 0.80 -0.6
212,026 + CSW01_01080 0.80 -2.8
212,026 + CSW01_01080 0.80 -0.2
212,026 + CSW01_01080 0.80 -2.7
212,026 + CSW01_01080 0.80 +1.0
212,026 + CSW01_01080 0.80 -0.6
212,032 - CSW01_01080 0.80 +3.3
212,034 - CSW01_01080 0.81 +1.7
212,034 - CSW01_01080 0.81 -3.1
212,034 - CSW01_01080 0.81 -4.1
212,054 - CSW01_01080 0.82 -0.4
212,059 + CSW01_01080 0.82 +0.5
212,059 + CSW01_01080 0.82 +0.3
212,067 - CSW01_01080 0.82 +0.1
212,067 - CSW01_01080 0.82 +0.2
212,067 - CSW01_01080 0.82 -3.5
212,067 - CSW01_01080 0.82 -1.7
212,125 + CSW01_01080 0.85 +1.4
212,125 + CSW01_01080 0.85 -1.2
212,132 - CSW01_01080 0.86 -3.0
212,133 - CSW01_01080 0.86 +0.3
212,133 - CSW01_01080 0.86 -0.2
212,138 + CSW01_01080 0.86 -0.4
212,153 + CSW01_01080 0.87 +0.6
212,153 + CSW01_01080 0.87 +1.2
212,153 + CSW01_01080 0.87 -4.0
212,153 + CSW01_01080 0.87 -0.3
212,153 + CSW01_01080 0.87 +2.9
212,153 + CSW01_01080 0.87 +0.4
212,161 - CSW01_01080 0.87 +0.8
212,161 - CSW01_01080 0.87 +1.6
212,161 - CSW01_01080 0.87 +0.7
212,161 - CSW01_01080 0.87 +0.2
212,161 - CSW01_01080 0.87 -0.1
212,161 - CSW01_01080 0.87 +1.0
212,161 - CSW01_01080 0.87 +0.5
212,161 - CSW01_01080 0.87 -0.0
212,175 + CSW01_01080 0.88 -0.3
212,181 + CSW01_01080 0.88 -4.1
212,273 + +1.4
212,291 + -3.8
212,293 + +1.4
212,305 + -3.2
212,305 + -1.3
212,310 + -1.3
212,329 - -3.1
212,417 - +0.9
212,422 + +2.8
212,422 + +0.1
212,422 + +1.0
212,422 + +0.6
212,445 - +1.4
212,452 + +1.2
212,503 - +0.8
212,506 + -2.1
212,509 + -0.1
212,509 + -0.2
212,509 + +0.9
212,509 + -2.9
212,517 - +0.0
212,551 - CSW01_01085 0.13 -0.2
212,579 - CSW01_01085 0.16 -3.2
212,598 + CSW01_01085 0.18 +0.8
212,606 - CSW01_01085 0.19 +1.0
212,606 - CSW01_01085 0.19 -3.2
212,606 - CSW01_01085 0.19 -3.4
212,664 - CSW01_01085 0.26 +0.5
212,697 - CSW01_01085 0.30 +0.2
212,746 + CSW01_01085 0.36 -0.3
212,746 + CSW01_01085 0.36 +3.1
212,754 - CSW01_01085 0.37 -0.6
212,770 - CSW01_01085 0.39 +1.2
212,787 + CSW01_01085 0.41 +1.8
212,795 - CSW01_01085 0.42 -2.5
212,809 + CSW01_01085 0.43 -2.6
212,809 + CSW01_01085 0.43 +1.3
212,820 + CSW01_01085 0.45 -0.1
212,820 + CSW01_01085 0.45 +0.3
212,828 - CSW01_01085 0.46 +0.0
212,838 - CSW01_01085 0.47 +0.8
212,857 + CSW01_01085 0.49 -2.9
212,860 - CSW01_01085 0.49 -0.5
212,865 - CSW01_01085 0.50 +1.9
212,929 + CSW01_01085 0.57 -1.4
212,970 + CSW01_01085 0.62 +1.5
212,978 - CSW01_01085 0.63 -3.1
213,018 + CSW01_01085 0.68 -0.5
213,040 - CSW01_01085 0.71 +0.8
213,040 - CSW01_01085 0.71 -1.0
213,040 - CSW01_01085 0.71 -0.3
213,063 + CSW01_01085 0.73 +0.6
213,098 + CSW01_01085 0.77 +0.4
213,149 + CSW01_01085 0.83 +0.3
213,189 + CSW01_01085 0.88 -0.6
213,280 - +2.4
213,523 - -0.2
213,523 - +0.7
213,554 + +1.0
213,562 - +0.1
213,562 - +1.0
213,562 - -0.3
213,576 + -0.7
213,576 + +0.5
213,695 - CSW01_01095 0.21 +0.5
213,762 + CSW01_01095 0.28 +0.2
213,792 + CSW01_01095 0.31 +0.5
213,792 - CSW01_01095 0.31 -3.3
213,802 + CSW01_01095 0.32 -2.8
213,814 + CSW01_01095 0.34 -2.5
213,827 - CSW01_01095 0.35 -4.2
213,878 + CSW01_01095 0.41 +0.4
213,891 - CSW01_01095 0.42 -0.2
213,925 + CSW01_01095 0.46 +0.5
213,929 - CSW01_01095 0.46 +1.3
213,930 + CSW01_01095 0.46 -2.9
213,950 + CSW01_01095 0.48 -2.8
213,973 + CSW01_01095 0.51 -1.7
213,974 - CSW01_01095 0.51 +1.7
213,981 - CSW01_01095 0.52 -0.8
213,990 + CSW01_01095 0.53 -2.0
213,994 + CSW01_01095 0.53 +1.5
213,996 - CSW01_01095 0.53 -2.1
214,002 - CSW01_01095 0.54 -2.5
214,017 - CSW01_01095 0.56 -0.4
214,027 - CSW01_01095 0.57 +0.1
214,052 - CSW01_01095 0.60 -2.7
214,052 - CSW01_01095 0.60 +0.5
214,180 + CSW01_01095 0.74 -3.4
214,188 - CSW01_01095 0.74 +0.2
214,188 - CSW01_01095 0.74 +1.6
214,203 + CSW01_01095 0.76 -0.1
214,215 - CSW01_01095 0.77 +1.6
214,245 + CSW01_01095 0.81 +0.4
214,264 + CSW01_01095 0.83 +0.3

Or see this region's nucleotide sequence