Experiment: ICP1_phage_235.3_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_00480 and CSW01_00485 are separated by 70 nucleotides CSW01_00485 and CSW01_00490 are separated by 27 nucleotides CSW01_00490 and CSW01_00495 overlap by 38 nucleotides CSW01_00495 and CSW01_00500 are separated by 168 nucleotides
CSW01_00480: CSW01_00480 - MATE family efflux transporter, at 87,682 to 89,046
_00480
CSW01_00485: CSW01_00485 - class I SAM-dependent methyltransferase, at 89,117 to 89,986
_00485
CSW01_00490: CSW01_00490 - repressor LexA, at 90,014 to 90,643
_00490
CSW01_00495: CSW01_00495 - SOS-response transcriptional repressor, at 90,606 to 90,794
_00495
CSW01_00500: CSW01_00500 - glycerol-3-phosphate 1-O-acyltransferase, at 90,963 to 93,389
_00500
Position (kb) 90
91 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 89.018 kb on - strand at 89.054 kb on - strand at 89.068 kb on + strand at 89.068 kb on + strand at 89.068 kb on + strand at 89.068 kb on + strand at 89.068 kb on + strand at 89.076 kb on - strand at 89.076 kb on - strand at 89.076 kb on - strand at 89.076 kb on - strand at 89.076 kb on - strand at 89.076 kb on - strand at 89.076 kb on - strand at 89.076 kb on - strand at 89.152 kb on - strand at 89.283 kb on - strand, within CSW01_00485 at 89.285 kb on + strand, within CSW01_00485 at 89.285 kb on + strand, within CSW01_00485 at 89.285 kb on + strand, within CSW01_00485 at 89.292 kb on - strand, within CSW01_00485 at 89.305 kb on - strand, within CSW01_00485 at 89.340 kb on + strand, within CSW01_00485 at 89.348 kb on - strand, within CSW01_00485 at 89.356 kb on + strand, within CSW01_00485 at 89.547 kb on - strand, within CSW01_00485 at 89.639 kb on + strand, within CSW01_00485 at 89.639 kb on + strand, within CSW01_00485 at 89.647 kb on - strand, within CSW01_00485 at 89.647 kb on - strand, within CSW01_00485 at 89.779 kb on - strand, within CSW01_00485 at 89.779 kb on - strand, within CSW01_00485 at 89.784 kb on + strand, within CSW01_00485 at 89.817 kb on + strand, within CSW01_00485 at 89.843 kb on + strand, within CSW01_00485 at 89.844 kb on - strand, within CSW01_00485 at 89.899 kb on + strand, within CSW01_00485 at 89.899 kb on + strand, within CSW01_00485 at 89.899 kb on + strand, within CSW01_00485 at 89.899 kb on + strand, within CSW01_00485 at 89.899 kb on + strand, within CSW01_00485 at 89.899 kb on + strand, within CSW01_00485 at 89.907 kb on - strand at 89.907 kb on - strand at 89.907 kb on - strand at 89.907 kb on - strand at 89.907 kb on - strand at 89.914 kb on + strand at 89.917 kb on - strand at 90.019 kb on + strand at 90.027 kb on - strand at 90.027 kb on - strand at 90.037 kb on - strand at 90.175 kb on - strand, within CSW01_00490 at 90.746 kb on + strand, within CSW01_00495 at 90.766 kb on - strand, within CSW01_00495 at 90.809 kb on - strand at 90.901 kb on - strand at 90.959 kb on - strand at 90.967 kb on + strand at 90.975 kb on - strand at 90.978 kb on + strand at 90.986 kb on - strand at 90.986 kb on - strand at 90.993 kb on + strand at 90.993 kb on + strand at 90.993 kb on + strand at 91.001 kb on - strand at 91.019 kb on + strand at 91.019 kb on + strand at 91.039 kb on + strand at 91.093 kb on - strand at 91.165 kb on - strand at 91.173 kb on - strand at 91.173 kb on - strand at 91.174 kb on + strand at 91.218 kb on + strand, within CSW01_00500 at 91.251 kb on - strand, within CSW01_00500 at 91.259 kb on - strand, within CSW01_00500 at 91.275 kb on - strand, within CSW01_00500 at 91.323 kb on - strand, within CSW01_00500 at 91.331 kb on - strand, within CSW01_00500 at 91.374 kb on + strand, within CSW01_00500 at 91.489 kb on - strand, within CSW01_00500 at 91.512 kb on - strand, within CSW01_00500 at 91.547 kb on + strand, within CSW01_00500
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep2 remove 89,018 - +1.0 89,054 - -0.6 89,068 + +0.0 89,068 + -2.6 89,068 + +0.7 89,068 + -1.3 89,068 + -0.3 89,076 - +0.8 89,076 - +0.9 89,076 - +2.9 89,076 - +0.6 89,076 - +0.0 89,076 - +0.8 89,076 - +0.5 89,076 - +1.7 89,152 - +0.4 89,283 - CSW01_00485 0.19 +0.9 89,285 + CSW01_00485 0.19 -0.0 89,285 + CSW01_00485 0.19 -0.0 89,285 + CSW01_00485 0.19 +0.4 89,292 - CSW01_00485 0.20 -3.1 89,305 - CSW01_00485 0.22 +0.2 89,340 + CSW01_00485 0.26 -4.0 89,348 - CSW01_00485 0.27 -1.9 89,356 + CSW01_00485 0.27 -3.2 89,547 - CSW01_00485 0.49 +0.2 89,639 + CSW01_00485 0.60 -2.7 89,639 + CSW01_00485 0.60 -3.4 89,647 - CSW01_00485 0.61 -0.6 89,647 - CSW01_00485 0.61 +0.2 89,779 - CSW01_00485 0.76 -4.3 89,779 - CSW01_00485 0.76 +2.2 89,784 + CSW01_00485 0.77 +0.9 89,817 + CSW01_00485 0.80 +0.8 89,843 + CSW01_00485 0.83 +0.3 89,844 - CSW01_00485 0.84 +0.5 89,899 + CSW01_00485 0.90 -3.0 89,899 + CSW01_00485 0.90 -0.3 89,899 + CSW01_00485 0.90 -1.7 89,899 + CSW01_00485 0.90 -3.7 89,899 + CSW01_00485 0.90 +1.0 89,899 + CSW01_00485 0.90 -2.6 89,907 - -0.4 89,907 - -0.1 89,907 - +0.3 89,907 - +1.2 89,907 - -0.4 89,914 + -1.9 89,917 - +1.9 90,019 + -4.9 90,027 - +0.3 90,027 - +0.3 90,037 - -0.9 90,175 - CSW01_00490 0.26 -1.4 90,746 + CSW01_00495 0.74 -3.2 90,766 - CSW01_00495 0.85 -0.2 90,809 - -4.1 90,901 - -3.7 90,959 - -0.6 90,967 + -1.4 90,975 - +0.4 90,978 + -1.6 90,986 - -2.5 90,986 - -1.5 90,993 + +0.4 90,993 + -1.6 90,993 + -0.6 91,001 - -1.0 91,019 + -2.9 91,019 + -0.9 91,039 + -1.1 91,093 - -1.5 91,165 - -2.3 91,173 - +0.4 91,173 - -4.4 91,174 + +1.1 91,218 + CSW01_00500 0.11 -0.5 91,251 - CSW01_00500 0.12 -2.8 91,259 - CSW01_00500 0.12 -0.6 91,275 - CSW01_00500 0.13 -2.1 91,323 - CSW01_00500 0.15 -0.6 91,331 - CSW01_00500 0.15 -1.0 91,374 + CSW01_00500 0.17 -4.0 91,489 - CSW01_00500 0.22 -0.6 91,512 - CSW01_00500 0.23 -0.4 91,547 + CSW01_00500 0.24 -1.6
Or see this region's nucleotide sequence