Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_918

Experiment: L-Threonine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_917 and Ac3H11_918 are separated by 221 nucleotidesAc3H11_918 and Ac3H11_919 are separated by 299 nucleotides Ac3H11_917 - multi-domain regulatory protein, at 29,926 to 31,074 _917 Ac3H11_918 - hypothetical protein, at 31,296 to 32,165 _918 Ac3H11_919 - Transcriptional regulator, LysR family, at 32,465 to 33,412 _919 Position (kb) 31 32 33Strain fitness (log2 ratio) -2 -1 0 1 2 3at 30.438 kb on - strand, within Ac3H11_917at 31.738 kb on + strand, within Ac3H11_918at 31.762 kb on + strand, within Ac3H11_918at 31.762 kb on + strand, within Ac3H11_918at 31.762 kb on + strand, within Ac3H11_918at 31.763 kb on - strand, within Ac3H11_918at 31.763 kb on - strand, within Ac3H11_918at 31.951 kb on + strand, within Ac3H11_918at 31.951 kb on + strand, within Ac3H11_918at 31.952 kb on - strand, within Ac3H11_918at 31.952 kb on - strand, within Ac3H11_918at 31.952 kb on - strand, within Ac3H11_918at 32.362 kb on + strandat 32.362 kb on + strandat 32.363 kb on - strandat 32.363 kb on - strandat 32.363 kb on - strandat 32.679 kb on + strand, within Ac3H11_919at 32.679 kb on + strand, within Ac3H11_919at 32.679 kb on + strand, within Ac3H11_919at 32.679 kb on + strand, within Ac3H11_919at 32.679 kb on + strand, within Ac3H11_919at 32.679 kb on + strand, within Ac3H11_919at 32.679 kb on + strand, within Ac3H11_919at 32.679 kb on + strand, within Ac3H11_919at 32.679 kb on + strand, within Ac3H11_919at 32.679 kb on + strand, within Ac3H11_919at 32.679 kb on + strand, within Ac3H11_919at 32.680 kb on - strand, within Ac3H11_919at 32.680 kb on - strand, within Ac3H11_919at 32.680 kb on - strand, within Ac3H11_919at 32.680 kb on - strand, within Ac3H11_919at 32.680 kb on - strand, within Ac3H11_919at 32.680 kb on - strand, within Ac3H11_919at 32.680 kb on - strand, within Ac3H11_919at 32.680 kb on - strand, within Ac3H11_919at 32.722 kb on - strand, within Ac3H11_919at 32.722 kb on - strand, within Ac3H11_919at 32.722 kb on - strand, within Ac3H11_919at 32.722 kb on - strand, within Ac3H11_919at 32.751 kb on + strand, within Ac3H11_919at 32.751 kb on + strand, within Ac3H11_919at 32.751 kb on + strand, within Ac3H11_919at 32.891 kb on + strand, within Ac3H11_919at 32.891 kb on + strand, within Ac3H11_919at 32.892 kb on - strand, within Ac3H11_919at 32.892 kb on - strand, within Ac3H11_919at 32.892 kb on - strand, within Ac3H11_919

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine (N)
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30,438 - Ac3H11_917 0.45 +1.2
31,738 + Ac3H11_918 0.51 -0.2
31,762 + Ac3H11_918 0.54 +0.7
31,762 + Ac3H11_918 0.54 +0.3
31,762 + Ac3H11_918 0.54 +0.1
31,763 - Ac3H11_918 0.54 -0.3
31,763 - Ac3H11_918 0.54 +1.4
31,951 + Ac3H11_918 0.75 -0.4
31,951 + Ac3H11_918 0.75 +0.2
31,952 - Ac3H11_918 0.75 +0.6
31,952 - Ac3H11_918 0.75 +0.5
31,952 - Ac3H11_918 0.75 +0.6
32,362 + -0.3
32,362 + +0.1
32,363 - -0.7
32,363 - -0.4
32,363 - -2.4
32,679 + Ac3H11_919 0.23 +3.0
32,679 + Ac3H11_919 0.23 +0.6
32,679 + Ac3H11_919 0.23 -0.2
32,679 + Ac3H11_919 0.23 +0.5
32,679 + Ac3H11_919 0.23 +1.2
32,679 + Ac3H11_919 0.23 -1.7
32,679 + Ac3H11_919 0.23 -0.3
32,679 + Ac3H11_919 0.23 -0.8
32,679 + Ac3H11_919 0.23 -0.2
32,679 + Ac3H11_919 0.23 +0.1
32,679 + Ac3H11_919 0.23 +0.7
32,680 - Ac3H11_919 0.23 +0.5
32,680 - Ac3H11_919 0.23 +0.7
32,680 - Ac3H11_919 0.23 -0.5
32,680 - Ac3H11_919 0.23 -0.5
32,680 - Ac3H11_919 0.23 +0.8
32,680 - Ac3H11_919 0.23 -0.2
32,680 - Ac3H11_919 0.23 -1.1
32,680 - Ac3H11_919 0.23 +0.1
32,722 - Ac3H11_919 0.27 +0.6
32,722 - Ac3H11_919 0.27 -0.7
32,722 - Ac3H11_919 0.27 +1.2
32,722 - Ac3H11_919 0.27 +0.2
32,751 + Ac3H11_919 0.30 +0.7
32,751 + Ac3H11_919 0.30 -0.4
32,751 + Ac3H11_919 0.30 +0.6
32,891 + Ac3H11_919 0.45 -1.2
32,891 + Ac3H11_919 0.45 -1.1
32,892 - Ac3H11_919 0.45 -0.8
32,892 - Ac3H11_919 0.45 -1.2
32,892 - Ac3H11_919 0.45 +0.2

Or see this region's nucleotide sequence