Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_503

Experiment: L-Threonine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_501 and Ac3H11_502 are separated by 15 nucleotidesAc3H11_502 and Ac3H11_503 overlap by 4 nucleotidesAc3H11_503 and Ac3H11_504 are separated by 66 nucleotides Ac3H11_501 - ABC-type multidrug transport system, permease component, at 196,426 to 197,634 _501 Ac3H11_502 - Membrane-fusion protein, at 197,650 to 198,633 _502 Ac3H11_503 - Outer membrane protein assembly factor YaeT precursor, at 198,630 to 200,024 _503 Ac3H11_504 - FIG00348850: hypothetical protein, at 200,091 to 200,912 _504 Position (kb) 198 199 200 201Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 197.795 kb on + strand, within Ac3H11_502at 197.795 kb on + strand, within Ac3H11_502at 197.796 kb on - strand, within Ac3H11_502at 197.796 kb on - strand, within Ac3H11_502at 198.122 kb on + strand, within Ac3H11_502at 198.122 kb on + strand, within Ac3H11_502at 198.122 kb on + strand, within Ac3H11_502at 198.122 kb on + strand, within Ac3H11_502at 198.123 kb on - strand, within Ac3H11_502at 198.664 kb on + strandat 198.664 kb on + strandat 198.664 kb on + strandat 198.664 kb on + strandat 198.664 kb on + strandat 198.664 kb on + strandat 198.664 kb on + strandat 198.665 kb on - strandat 198.665 kb on - strandat 198.665 kb on - strandat 198.665 kb on - strandat 198.665 kb on - strandat 198.665 kb on - strandat 198.724 kb on + strandat 198.724 kb on + strandat 198.725 kb on - strandat 198.725 kb on - strandat 198.880 kb on + strand, within Ac3H11_503at 198.881 kb on - strand, within Ac3H11_503at 199.507 kb on + strand, within Ac3H11_503at 199.507 kb on + strand, within Ac3H11_503at 199.529 kb on + strand, within Ac3H11_503at 199.530 kb on - strand, within Ac3H11_503at 199.530 kb on - strand, within Ac3H11_503at 199.621 kb on + strand, within Ac3H11_503at 199.621 kb on + strand, within Ac3H11_503at 199.621 kb on + strand, within Ac3H11_503at 199.621 kb on + strand, within Ac3H11_503at 199.622 kb on - strand, within Ac3H11_503at 199.622 kb on - strand, within Ac3H11_503at 199.622 kb on - strand, within Ac3H11_503at 199.622 kb on - strand, within Ac3H11_503at 199.622 kb on - strand, within Ac3H11_503at 199.622 kb on - strand, within Ac3H11_503at 199.622 kb on - strand, within Ac3H11_503at 199.622 kb on - strand, within Ac3H11_503at 199.682 kb on - strand, within Ac3H11_503at 199.682 kb on - strand, within Ac3H11_503at 199.682 kb on - strand, within Ac3H11_503at 199.682 kb on - strand, within Ac3H11_503at 199.701 kb on + strand, within Ac3H11_503at 199.701 kb on + strand, within Ac3H11_503at 199.701 kb on + strand, within Ac3H11_503at 199.701 kb on + strand, within Ac3H11_503at 199.702 kb on - strand, within Ac3H11_503at 199.702 kb on - strand, within Ac3H11_503at 199.801 kb on + strand, within Ac3H11_503at 199.801 kb on + strand, within Ac3H11_503at 199.801 kb on + strand, within Ac3H11_503at 199.801 kb on + strand, within Ac3H11_503at 199.802 kb on - strand, within Ac3H11_503at 199.802 kb on - strand, within Ac3H11_503at 199.802 kb on - strand, within Ac3H11_503at 199.802 kb on - strand, within Ac3H11_503at 199.802 kb on - strand, within Ac3H11_503at 199.802 kb on - strand, within Ac3H11_503at 199.802 kb on - strand, within Ac3H11_503at 199.802 kb on - strand, within Ac3H11_503at 199.802 kb on - strand, within Ac3H11_503at 199.802 kb on - strand, within Ac3H11_503at 199.808 kb on - strand, within Ac3H11_503at 199.808 kb on - strand, within Ac3H11_503at 199.808 kb on - strand, within Ac3H11_503at 200.113 kb on + strandat 200.113 kb on + strandat 200.113 kb on + strandat 200.114 kb on - strandat 200.114 kb on - strandat 200.191 kb on + strand, within Ac3H11_504at 200.192 kb on - strand, within Ac3H11_504at 200.192 kb on - strand, within Ac3H11_504at 200.398 kb on + strand, within Ac3H11_504at 200.398 kb on + strand, within Ac3H11_504at 200.398 kb on + strand, within Ac3H11_504at 200.399 kb on - strand, within Ac3H11_504at 200.399 kb on - strand, within Ac3H11_504at 200.952 kb on + strandat 200.952 kb on + strandat 200.953 kb on - strandat 200.953 kb on - strandat 200.976 kb on + strandat 200.976 kb on + strandat 200.976 kb on + strandat 200.976 kb on + strandat 200.976 kb on + strandat 200.976 kb on + strandat 200.977 kb on - strandat 200.998 kb on - strandat 201.007 kb on + strandat 201.007 kb on + strandat 201.008 kb on - strandat 201.011 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine (N)
remove
197,795 + Ac3H11_502 0.15 -3.4
197,795 + Ac3H11_502 0.15 -3.2
197,796 - Ac3H11_502 0.15 -0.9
197,796 - Ac3H11_502 0.15 +1.8
198,122 + Ac3H11_502 0.48 -0.2
198,122 + Ac3H11_502 0.48 +1.2
198,122 + Ac3H11_502 0.48 -0.4
198,122 + Ac3H11_502 0.48 -0.5
198,123 - Ac3H11_502 0.48 -2.0
198,664 + -2.4
198,664 + -2.0
198,664 + -2.4
198,664 + -2.1
198,664 + +0.3
198,664 + -0.6
198,664 + -0.3
198,665 - +0.1
198,665 - -1.2
198,665 - -1.2
198,665 - -0.6
198,665 - -1.8
198,665 - +0.1
198,724 + -0.1
198,724 + -2.2
198,725 - -0.5
198,725 - -1.8
198,880 + Ac3H11_503 0.18 -3.4
198,881 - Ac3H11_503 0.18 -1.1
199,507 + Ac3H11_503 0.63 -0.4
199,507 + Ac3H11_503 0.63 +0.1
199,529 + Ac3H11_503 0.64 -1.8
199,530 - Ac3H11_503 0.65 -1.9
199,530 - Ac3H11_503 0.65 -0.5
199,621 + Ac3H11_503 0.71 -1.2
199,621 + Ac3H11_503 0.71 -2.4
199,621 + Ac3H11_503 0.71 -1.1
199,621 + Ac3H11_503 0.71 -1.4
199,622 - Ac3H11_503 0.71 +0.1
199,622 - Ac3H11_503 0.71 -1.0
199,622 - Ac3H11_503 0.71 -2.0
199,622 - Ac3H11_503 0.71 -0.6
199,622 - Ac3H11_503 0.71 -1.1
199,622 - Ac3H11_503 0.71 -2.0
199,622 - Ac3H11_503 0.71 +0.8
199,622 - Ac3H11_503 0.71 -0.7
199,682 - Ac3H11_503 0.75 -1.1
199,682 - Ac3H11_503 0.75 -3.0
199,682 - Ac3H11_503 0.75 -2.0
199,682 - Ac3H11_503 0.75 -2.6
199,701 + Ac3H11_503 0.77 -0.7
199,701 + Ac3H11_503 0.77 -0.6
199,701 + Ac3H11_503 0.77 -0.4
199,701 + Ac3H11_503 0.77 -2.1
199,702 - Ac3H11_503 0.77 -2.4
199,702 - Ac3H11_503 0.77 -3.6
199,801 + Ac3H11_503 0.84 +1.4
199,801 + Ac3H11_503 0.84 -2.1
199,801 + Ac3H11_503 0.84 -1.0
199,801 + Ac3H11_503 0.84 -0.5
199,802 - Ac3H11_503 0.84 -1.3
199,802 - Ac3H11_503 0.84 -0.5
199,802 - Ac3H11_503 0.84 -2.8
199,802 - Ac3H11_503 0.84 -1.0
199,802 - Ac3H11_503 0.84 -1.8
199,802 - Ac3H11_503 0.84 -0.3
199,802 - Ac3H11_503 0.84 -1.3
199,802 - Ac3H11_503 0.84 -0.2
199,802 - Ac3H11_503 0.84 -0.7
199,802 - Ac3H11_503 0.84 -2.7
199,808 - Ac3H11_503 0.84 -1.0
199,808 - Ac3H11_503 0.84 -1.1
199,808 - Ac3H11_503 0.84 -1.1
200,113 + +0.5
200,113 + -1.0
200,113 + -1.3
200,114 - -0.8
200,114 - +1.5
200,191 + Ac3H11_504 0.12 -0.5
200,192 - Ac3H11_504 0.12 +1.6
200,192 - Ac3H11_504 0.12 -1.0
200,398 + Ac3H11_504 0.37 -1.5
200,398 + Ac3H11_504 0.37 -0.3
200,398 + Ac3H11_504 0.37 +0.8
200,399 - Ac3H11_504 0.37 +0.5
200,399 - Ac3H11_504 0.37 +1.9
200,952 + +2.2
200,952 + -0.1
200,953 - -0.4
200,953 - +0.5
200,976 + -2.9
200,976 + +0.3
200,976 + -2.1
200,976 + +0.8
200,976 + +0.0
200,976 + -0.5
200,977 - +0.0
200,998 - +0.1
201,007 + -0.1
201,007 + +0.1
201,008 - +1.8
201,011 + -0.7

Or see this region's nucleotide sequence