Experiment: L-Threonine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3406 and Ac3H11_3407 are separated by 36 nucleotides Ac3H11_3407 and Ac3H11_3408 are separated by 2 nucleotides
Ac3H11_3406 - Acetyl-CoA:acetoacetyl-CoA transferase, alpha subunit (EC 2.8.3.8), at 83,897 to 85,489
_3406
Ac3H11_3407 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16), at 85,526 to 86,776
_3407
Ac3H11_3408 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 86,779 to 87,993
_3408
Position (kb) 85
86
87 Strain fitness (log2 ratio) -2
-1
0
1
2 at 84.780 kb on + strand, within Ac3H11_3406 at 84.780 kb on + strand, within Ac3H11_3406 at 84.780 kb on + strand, within Ac3H11_3406 at 84.780 kb on + strand, within Ac3H11_3406 at 84.781 kb on - strand, within Ac3H11_3406 at 84.781 kb on - strand, within Ac3H11_3406 at 84.781 kb on - strand, within Ac3H11_3406 at 84.781 kb on - strand, within Ac3H11_3406 at 85.000 kb on - strand, within Ac3H11_3406 at 85.512 kb on + strand at 85.513 kb on - strand at 85.513 kb on - strand at 85.542 kb on + strand at 85.597 kb on - strand at 85.852 kb on - strand, within Ac3H11_3407 at 85.923 kb on + strand, within Ac3H11_3407 at 85.923 kb on + strand, within Ac3H11_3407 at 85.923 kb on + strand, within Ac3H11_3407 at 85.923 kb on + strand, within Ac3H11_3407 at 85.923 kb on + strand, within Ac3H11_3407 at 85.923 kb on + strand, within Ac3H11_3407 at 85.924 kb on - strand, within Ac3H11_3407 at 85.924 kb on - strand, within Ac3H11_3407 at 85.924 kb on - strand, within Ac3H11_3407 at 85.924 kb on - strand, within Ac3H11_3407 at 85.976 kb on - strand, within Ac3H11_3407 at 85.976 kb on - strand, within Ac3H11_3407 at 86.004 kb on + strand, within Ac3H11_3407 at 86.211 kb on + strand, within Ac3H11_3407 at 86.367 kb on + strand, within Ac3H11_3407 at 86.500 kb on + strand, within Ac3H11_3407 at 86.500 kb on + strand, within Ac3H11_3407 at 86.529 kb on + strand, within Ac3H11_3407 at 86.529 kb on + strand, within Ac3H11_3407 at 86.684 kb on + strand at 86.963 kb on + strand, within Ac3H11_3408 at 86.963 kb on + strand, within Ac3H11_3408 at 87.122 kb on + strand, within Ac3H11_3408 at 87.122 kb on + strand, within Ac3H11_3408 at 87.122 kb on + strand, within Ac3H11_3408 at 87.398 kb on + strand, within Ac3H11_3408 at 87.398 kb on + strand, within Ac3H11_3408 at 87.398 kb on + strand, within Ac3H11_3408 at 87.398 kb on + strand, within Ac3H11_3408 at 87.399 kb on - strand, within Ac3H11_3408 at 87.399 kb on - strand, within Ac3H11_3408 at 87.441 kb on - strand, within Ac3H11_3408 at 87.449 kb on + strand, within Ac3H11_3408 at 87.543 kb on - strand, within Ac3H11_3408 at 87.620 kb on + strand, within Ac3H11_3408 at 87.621 kb on - strand, within Ac3H11_3408
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (N) remove 84,780 + Ac3H11_3406 0.55 +0.4 84,780 + Ac3H11_3406 0.55 +0.1 84,780 + Ac3H11_3406 0.55 +1.0 84,780 + Ac3H11_3406 0.55 -2.4 84,781 - Ac3H11_3406 0.55 -0.1 84,781 - Ac3H11_3406 0.55 +0.6 84,781 - Ac3H11_3406 0.55 -0.4 84,781 - Ac3H11_3406 0.55 -1.0 85,000 - Ac3H11_3406 0.69 +1.6 85,512 + -1.0 85,513 - +1.0 85,513 - -1.5 85,542 + +0.8 85,597 - +1.2 85,852 - Ac3H11_3407 0.26 +0.4 85,923 + Ac3H11_3407 0.32 -2.1 85,923 + Ac3H11_3407 0.32 +0.2 85,923 + Ac3H11_3407 0.32 -0.7 85,923 + Ac3H11_3407 0.32 -0.0 85,923 + Ac3H11_3407 0.32 -1.2 85,923 + Ac3H11_3407 0.32 +0.2 85,924 - Ac3H11_3407 0.32 -0.7 85,924 - Ac3H11_3407 0.32 -0.6 85,924 - Ac3H11_3407 0.32 -0.2 85,924 - Ac3H11_3407 0.32 +0.2 85,976 - Ac3H11_3407 0.36 -0.2 85,976 - Ac3H11_3407 0.36 +1.2 86,004 + Ac3H11_3407 0.38 +0.6 86,211 + Ac3H11_3407 0.55 -0.5 86,367 + Ac3H11_3407 0.67 -0.6 86,500 + Ac3H11_3407 0.78 -0.2 86,500 + Ac3H11_3407 0.78 +0.8 86,529 + Ac3H11_3407 0.80 -0.8 86,529 + Ac3H11_3407 0.80 +1.3 86,684 + -0.5 86,963 + Ac3H11_3408 0.15 +1.3 86,963 + Ac3H11_3408 0.15 +2.1 87,122 + Ac3H11_3408 0.28 +0.1 87,122 + Ac3H11_3408 0.28 +0.0 87,122 + Ac3H11_3408 0.28 -1.1 87,398 + Ac3H11_3408 0.51 +0.9 87,398 + Ac3H11_3408 0.51 +1.1 87,398 + Ac3H11_3408 0.51 -1.7 87,398 + Ac3H11_3408 0.51 +0.2 87,399 - Ac3H11_3408 0.51 -1.2 87,399 - Ac3H11_3408 0.51 -2.4 87,441 - Ac3H11_3408 0.54 +0.5 87,449 + Ac3H11_3408 0.55 -0.3 87,543 - Ac3H11_3408 0.63 +0.2 87,620 + Ac3H11_3408 0.69 +0.2 87,621 - Ac3H11_3408 0.69 +0.9
Or see this region's nucleotide sequence