Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3082

Experiment: L-Threonine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3081 and Ac3H11_3082 overlap by 4 nucleotidesAc3H11_3082 and Ac3H11_3083 are separated by 274 nucleotides Ac3H11_3081 - Methyl-accepting chemotaxis protein, at 103,863 to 106,556 _3081 Ac3H11_3082 - conserved hypothetical protein, at 106,553 to 107,341 _3082 Ac3H11_3083 - Benzoyl-CoA oxygenase component A, at 107,616 to 108,884 _3083 Position (kb) 106 107 108Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 105.675 kb on + strand, within Ac3H11_3081at 105.676 kb on - strand, within Ac3H11_3081at 106.229 kb on - strand, within Ac3H11_3081at 106.229 kb on - strand, within Ac3H11_3081at 106.432 kb on + strandat 106.432 kb on + strandat 106.432 kb on + strandat 106.432 kb on + strandat 106.433 kb on - strandat 107.195 kb on + strand, within Ac3H11_3082at 107.337 kb on + strandat 107.337 kb on + strandat 107.338 kb on - strandat 107.338 kb on - strandat 107.338 kb on - strandat 107.338 kb on - strandat 107.338 kb on - strandat 107.436 kb on - strandat 107.491 kb on + strandat 107.491 kb on + strandat 107.491 kb on + strandat 107.491 kb on + strandat 107.491 kb on + strandat 107.491 kb on + strandat 107.492 kb on - strandat 107.492 kb on - strandat 107.492 kb on - strandat 107.492 kb on - strandat 107.492 kb on - strandat 107.492 kb on - strandat 107.492 kb on - strandat 107.564 kb on + strandat 107.565 kb on - strandat 107.565 kb on - strandat 107.565 kb on - strandat 107.620 kb on + strandat 107.621 kb on - strandat 107.752 kb on + strand, within Ac3H11_3083at 107.752 kb on + strand, within Ac3H11_3083at 107.752 kb on + strand, within Ac3H11_3083at 107.752 kb on + strand, within Ac3H11_3083at 107.752 kb on + strand, within Ac3H11_3083at 107.752 kb on + strand, within Ac3H11_3083at 107.752 kb on + strand, within Ac3H11_3083at 107.752 kb on + strand, within Ac3H11_3083at 107.752 kb on + strand, within Ac3H11_3083at 107.752 kb on + strand, within Ac3H11_3083at 107.752 kb on + strand, within Ac3H11_3083at 107.752 kb on + strand, within Ac3H11_3083at 107.752 kb on + strand, within Ac3H11_3083at 107.752 kb on + strand, within Ac3H11_3083at 107.753 kb on - strand, within Ac3H11_3083at 107.753 kb on - strand, within Ac3H11_3083at 107.753 kb on - strand, within Ac3H11_3083at 107.753 kb on - strand, within Ac3H11_3083at 107.753 kb on - strand, within Ac3H11_3083at 107.824 kb on + strand, within Ac3H11_3083at 107.824 kb on + strand, within Ac3H11_3083at 107.824 kb on + strand, within Ac3H11_3083at 107.825 kb on - strand, within Ac3H11_3083at 107.825 kb on - strand, within Ac3H11_3083at 107.825 kb on - strand, within Ac3H11_3083at 107.908 kb on + strand, within Ac3H11_3083at 107.909 kb on - strand, within Ac3H11_3083at 108.215 kb on + strand, within Ac3H11_3083at 108.215 kb on + strand, within Ac3H11_3083at 108.215 kb on + strand, within Ac3H11_3083at 108.216 kb on - strand, within Ac3H11_3083at 108.216 kb on - strand, within Ac3H11_3083at 108.216 kb on - strand, within Ac3H11_3083at 108.216 kb on - strand, within Ac3H11_3083at 108.216 kb on - strand, within Ac3H11_3083at 108.216 kb on - strand, within Ac3H11_3083at 108.216 kb on - strand, within Ac3H11_3083at 108.216 kb on - strand, within Ac3H11_3083at 108.216 kb on - strand, within Ac3H11_3083at 108.216 kb on - strand, within Ac3H11_3083at 108.217 kb on + strand, within Ac3H11_3083at 108.257 kb on - strand, within Ac3H11_3083

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine (N)
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105,675 + Ac3H11_3081 0.67 +6.7
105,676 - Ac3H11_3081 0.67 +1.6
106,229 - Ac3H11_3081 0.88 -1.1
106,229 - Ac3H11_3081 0.88 +1.6
106,432 + +0.4
106,432 + -0.2
106,432 + +0.3
106,432 + +1.9
106,433 - -0.3
107,195 + Ac3H11_3082 0.81 +1.7
107,337 + +1.5
107,337 + -1.2
107,338 - +0.1
107,338 - +1.0
107,338 - +0.8
107,338 - -0.5
107,338 - +0.3
107,436 - -0.2
107,491 + -0.6
107,491 + -0.2
107,491 + -1.0
107,491 + +0.2
107,491 + +0.0
107,491 + +0.0
107,492 - -0.5
107,492 - -1.1
107,492 - +1.1
107,492 - -0.2
107,492 - +0.3
107,492 - -0.3
107,492 - -0.6
107,564 + -0.1
107,565 - +1.4
107,565 - +1.2
107,565 - +2.5
107,620 + -0.9
107,621 - -1.4
107,752 + Ac3H11_3083 0.11 +0.1
107,752 + Ac3H11_3083 0.11 +0.0
107,752 + Ac3H11_3083 0.11 -0.7
107,752 + Ac3H11_3083 0.11 -0.9
107,752 + Ac3H11_3083 0.11 -0.3
107,752 + Ac3H11_3083 0.11 -2.7
107,752 + Ac3H11_3083 0.11 -0.9
107,752 + Ac3H11_3083 0.11 +0.0
107,752 + Ac3H11_3083 0.11 -0.3
107,752 + Ac3H11_3083 0.11 -1.0
107,752 + Ac3H11_3083 0.11 -1.1
107,752 + Ac3H11_3083 0.11 -1.9
107,752 + Ac3H11_3083 0.11 +0.0
107,752 + Ac3H11_3083 0.11 -1.5
107,753 - Ac3H11_3083 0.11 -1.6
107,753 - Ac3H11_3083 0.11 -0.1
107,753 - Ac3H11_3083 0.11 -1.0
107,753 - Ac3H11_3083 0.11 -2.0
107,753 - Ac3H11_3083 0.11 -1.8
107,824 + Ac3H11_3083 0.16 +0.2
107,824 + Ac3H11_3083 0.16 -1.2
107,824 + Ac3H11_3083 0.16 -0.8
107,825 - Ac3H11_3083 0.16 -1.6
107,825 - Ac3H11_3083 0.16 +0.4
107,825 - Ac3H11_3083 0.16 -0.8
107,908 + Ac3H11_3083 0.23 -0.7
107,909 - Ac3H11_3083 0.23 -2.0
108,215 + Ac3H11_3083 0.47 -2.0
108,215 + Ac3H11_3083 0.47 -0.3
108,215 + Ac3H11_3083 0.47 +0.1
108,216 - Ac3H11_3083 0.47 -0.3
108,216 - Ac3H11_3083 0.47 +0.5
108,216 - Ac3H11_3083 0.47 +0.5
108,216 - Ac3H11_3083 0.47 -0.5
108,216 - Ac3H11_3083 0.47 -0.6
108,216 - Ac3H11_3083 0.47 +0.2
108,216 - Ac3H11_3083 0.47 -2.8
108,216 - Ac3H11_3083 0.47 -0.7
108,216 - Ac3H11_3083 0.47 -2.7
108,216 - Ac3H11_3083 0.47 -1.4
108,217 + Ac3H11_3083 0.47 -0.7
108,257 - Ac3H11_3083 0.51 -1.3

Or see this region's nucleotide sequence