Experiment: L-Threonine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_2404 and Ac3H11_2405 are separated by 10 nucleotides Ac3H11_2405 and Ac3H11_2406 are separated by 171 nucleotides Ac3H11_2406 and Ac3H11_2407 are separated by 597 nucleotides
Ac3H11_2404 - Aspartate aminotransferase (EC 2.6.1.1), at 660,473 to 661,639
_2404
Ac3H11_2405 - hypothetical protein, at 661,650 to 662,066
_2405
Ac3H11_2406 - Permease of the drug/metabolite transporter (DMT) superfamily, at 662,238 to 663,080
_2406
Ac3H11_2407 - sensor histidine kinase, at 663,678 to 664,364
_2407
Position (kb) 662
663
664 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 661.319 kb on + strand, within Ac3H11_2404 at 661.319 kb on + strand, within Ac3H11_2404 at 661.320 kb on - strand, within Ac3H11_2404 at 661.320 kb on - strand, within Ac3H11_2404 at 661.340 kb on + strand, within Ac3H11_2404 at 661.340 kb on + strand, within Ac3H11_2404 at 661.361 kb on + strand, within Ac3H11_2404 at 661.361 kb on + strand, within Ac3H11_2404 at 661.361 kb on + strand, within Ac3H11_2404 at 661.361 kb on + strand, within Ac3H11_2404 at 661.362 kb on - strand, within Ac3H11_2404 at 661.436 kb on + strand, within Ac3H11_2404 at 661.437 kb on - strand, within Ac3H11_2404 at 661.437 kb on - strand, within Ac3H11_2404 at 661.437 kb on - strand, within Ac3H11_2404 at 661.437 kb on - strand, within Ac3H11_2404 at 661.544 kb on + strand at 661.545 kb on - strand at 661.545 kb on - strand at 661.712 kb on - strand, within Ac3H11_2405 at 661.960 kb on + strand, within Ac3H11_2405 at 661.960 kb on + strand, within Ac3H11_2405 at 661.960 kb on + strand, within Ac3H11_2405 at 661.960 kb on + strand, within Ac3H11_2405 at 661.960 kb on + strand, within Ac3H11_2405 at 661.960 kb on + strand, within Ac3H11_2405 at 661.960 kb on + strand, within Ac3H11_2405 at 661.960 kb on + strand, within Ac3H11_2405 at 661.960 kb on + strand, within Ac3H11_2405 at 661.960 kb on + strand, within Ac3H11_2405 at 661.961 kb on - strand, within Ac3H11_2405 at 661.961 kb on - strand, within Ac3H11_2405 at 661.961 kb on - strand, within Ac3H11_2405 at 661.961 kb on - strand, within Ac3H11_2405 at 661.961 kb on - strand, within Ac3H11_2405 at 661.961 kb on - strand, within Ac3H11_2405 at 662.021 kb on + strand, within Ac3H11_2405 at 662.021 kb on + strand, within Ac3H11_2405 at 662.022 kb on - strand, within Ac3H11_2405 at 662.022 kb on - strand, within Ac3H11_2405 at 662.226 kb on + strand at 662.227 kb on - strand at 662.509 kb on + strand, within Ac3H11_2406 at 662.509 kb on + strand, within Ac3H11_2406 at 662.509 kb on + strand, within Ac3H11_2406 at 662.509 kb on + strand, within Ac3H11_2406 at 662.509 kb on + strand, within Ac3H11_2406 at 662.509 kb on + strand, within Ac3H11_2406 at 662.510 kb on - strand, within Ac3H11_2406 at 662.510 kb on - strand, within Ac3H11_2406 at 662.510 kb on - strand, within Ac3H11_2406 at 662.546 kb on - strand, within Ac3H11_2406 at 662.600 kb on - strand, within Ac3H11_2406 at 662.600 kb on - strand, within Ac3H11_2406 at 662.618 kb on + strand, within Ac3H11_2406 at 662.706 kb on + strand, within Ac3H11_2406 at 662.872 kb on + strand, within Ac3H11_2406 at 663.022 kb on + strand at 663.022 kb on + strand at 663.023 kb on - strand at 663.023 kb on - strand at 663.211 kb on + strand at 663.212 kb on - strand at 663.212 kb on - strand at 663.212 kb on - strand at 663.305 kb on + strand at 663.305 kb on + strand at 663.305 kb on + strand at 663.306 kb on - strand at 663.306 kb on - strand at 663.306 kb on - strand at 663.306 kb on - strand at 663.306 kb on - strand at 663.318 kb on + strand at 663.318 kb on + strand at 663.399 kb on + strand at 663.583 kb on + strand at 663.584 kb on - strand at 663.584 kb on - strand at 663.584 kb on - strand at 663.622 kb on + strand at 663.623 kb on - strand at 663.680 kb on - strand at 663.772 kb on + strand, within Ac3H11_2407 at 663.772 kb on + strand, within Ac3H11_2407 at 663.772 kb on + strand, within Ac3H11_2407 at 663.772 kb on + strand, within Ac3H11_2407 at 663.772 kb on + strand, within Ac3H11_2407 at 663.772 kb on + strand, within Ac3H11_2407 at 663.772 kb on + strand, within Ac3H11_2407 at 663.772 kb on + strand, within Ac3H11_2407 at 663.773 kb on - strand, within Ac3H11_2407 at 663.773 kb on - strand, within Ac3H11_2407 at 663.773 kb on - strand, within Ac3H11_2407 at 663.773 kb on - strand, within Ac3H11_2407 at 663.773 kb on - strand, within Ac3H11_2407 at 663.773 kb on - strand, within Ac3H11_2407 at 663.773 kb on - strand, within Ac3H11_2407 at 663.773 kb on - strand, within Ac3H11_2407 at 663.773 kb on - strand, within Ac3H11_2407 at 663.773 kb on - strand, within Ac3H11_2407 at 663.784 kb on + strand, within Ac3H11_2407 at 663.784 kb on + strand, within Ac3H11_2407 at 663.785 kb on - strand, within Ac3H11_2407 at 663.785 kb on - strand, within Ac3H11_2407
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (N) remove 661,319 + Ac3H11_2404 0.72 -1.6 661,319 + Ac3H11_2404 0.72 +0.3 661,320 - Ac3H11_2404 0.73 -1.4 661,320 - Ac3H11_2404 0.73 -2.7 661,340 + Ac3H11_2404 0.74 -1.6 661,340 + Ac3H11_2404 0.74 -1.9 661,361 + Ac3H11_2404 0.76 -1.6 661,361 + Ac3H11_2404 0.76 -1.5 661,361 + Ac3H11_2404 0.76 -1.9 661,361 + Ac3H11_2404 0.76 -0.5 661,362 - Ac3H11_2404 0.76 -1.7 661,436 + Ac3H11_2404 0.83 -2.4 661,437 - Ac3H11_2404 0.83 -0.6 661,437 - Ac3H11_2404 0.83 -2.9 661,437 - Ac3H11_2404 0.83 +0.4 661,437 - Ac3H11_2404 0.83 -1.0 661,544 + -2.0 661,545 - -1.0 661,545 - -0.2 661,712 - Ac3H11_2405 0.15 -0.3 661,960 + Ac3H11_2405 0.74 +0.3 661,960 + Ac3H11_2405 0.74 +0.5 661,960 + Ac3H11_2405 0.74 +1.3 661,960 + Ac3H11_2405 0.74 -0.0 661,960 + Ac3H11_2405 0.74 +1.7 661,960 + Ac3H11_2405 0.74 +0.9 661,960 + Ac3H11_2405 0.74 -0.6 661,960 + Ac3H11_2405 0.74 +0.6 661,960 + Ac3H11_2405 0.74 +0.2 661,960 + Ac3H11_2405 0.74 +2.0 661,961 - Ac3H11_2405 0.75 -1.1 661,961 - Ac3H11_2405 0.75 +0.9 661,961 - Ac3H11_2405 0.75 +0.5 661,961 - Ac3H11_2405 0.75 -0.5 661,961 - Ac3H11_2405 0.75 +0.0 661,961 - Ac3H11_2405 0.75 +0.4 662,021 + Ac3H11_2405 0.89 -0.8 662,021 + Ac3H11_2405 0.89 -0.6 662,022 - Ac3H11_2405 0.89 +0.3 662,022 - Ac3H11_2405 0.89 +0.0 662,226 + +0.0 662,227 - -0.6 662,509 + Ac3H11_2406 0.32 +0.0 662,509 + Ac3H11_2406 0.32 -0.1 662,509 + Ac3H11_2406 0.32 +0.6 662,509 + Ac3H11_2406 0.32 +1.0 662,509 + Ac3H11_2406 0.32 +0.6 662,509 + Ac3H11_2406 0.32 +1.1 662,510 - Ac3H11_2406 0.32 -0.4 662,510 - Ac3H11_2406 0.32 -0.1 662,510 - Ac3H11_2406 0.32 -0.2 662,546 - Ac3H11_2406 0.37 -1.6 662,600 - Ac3H11_2406 0.43 -0.6 662,600 - Ac3H11_2406 0.43 +0.5 662,618 + Ac3H11_2406 0.45 -0.0 662,706 + Ac3H11_2406 0.56 +0.2 662,872 + Ac3H11_2406 0.75 +0.5 663,022 + -2.2 663,022 + -0.1 663,023 - -0.7 663,023 - +1.0 663,211 + -0.1 663,212 - +2.2 663,212 - +1.7 663,212 - -1.3 663,305 + +1.4 663,305 + -0.2 663,305 + +1.2 663,306 - +0.6 663,306 - -0.1 663,306 - +0.7 663,306 - +0.4 663,306 - -0.4 663,318 + -0.2 663,318 + -3.8 663,399 + +0.0 663,583 + -0.8 663,584 - +2.0 663,584 - +0.7 663,584 - -0.3 663,622 + -0.5 663,623 - -1.0 663,680 - -0.3 663,772 + Ac3H11_2407 0.14 +0.7 663,772 + Ac3H11_2407 0.14 +0.2 663,772 + Ac3H11_2407 0.14 +0.6 663,772 + Ac3H11_2407 0.14 -0.9 663,772 + Ac3H11_2407 0.14 -0.3 663,772 + Ac3H11_2407 0.14 -0.9 663,772 + Ac3H11_2407 0.14 +0.7 663,772 + Ac3H11_2407 0.14 -0.7 663,773 - Ac3H11_2407 0.14 +0.8 663,773 - Ac3H11_2407 0.14 -0.8 663,773 - Ac3H11_2407 0.14 +0.2 663,773 - Ac3H11_2407 0.14 +0.4 663,773 - Ac3H11_2407 0.14 -0.2 663,773 - Ac3H11_2407 0.14 -0.5 663,773 - Ac3H11_2407 0.14 -1.2 663,773 - Ac3H11_2407 0.14 -0.4 663,773 - Ac3H11_2407 0.14 -0.4 663,773 - Ac3H11_2407 0.14 -0.3 663,784 + Ac3H11_2407 0.15 -1.0 663,784 + Ac3H11_2407 0.15 +0.5 663,785 - Ac3H11_2407 0.16 -0.2 663,785 - Ac3H11_2407 0.16 -0.5
Or see this region's nucleotide sequence