Experiment: L-Threonine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_2156 and Ac3H11_2157 overlap by 4 nucleotides Ac3H11_2157 and Ac3H11_2158 are separated by 514 nucleotides
Ac3H11_2156 - Two-component response regulator CreC, at 384,978 to 386,444
_2156
Ac3H11_2157 - hypothetical protein, at 386,441 to 386,605
_2157
Ac3H11_2158 - Inner membrane protein CreD, at 387,120 to 388,625
_2158
Position (kb) 386
387 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 385.461 kb on + strand, within Ac3H11_2156 at 385.461 kb on + strand, within Ac3H11_2156 at 385.461 kb on + strand, within Ac3H11_2156 at 385.461 kb on + strand, within Ac3H11_2156 at 385.461 kb on + strand, within Ac3H11_2156 at 385.461 kb on + strand, within Ac3H11_2156 at 385.461 kb on + strand, within Ac3H11_2156 at 385.462 kb on - strand, within Ac3H11_2156 at 385.462 kb on - strand, within Ac3H11_2156 at 385.462 kb on - strand, within Ac3H11_2156 at 385.462 kb on - strand, within Ac3H11_2156 at 385.462 kb on - strand, within Ac3H11_2156 at 385.462 kb on - strand, within Ac3H11_2156 at 385.462 kb on - strand, within Ac3H11_2156 at 385.487 kb on - strand, within Ac3H11_2156 at 385.487 kb on - strand, within Ac3H11_2156 at 385.644 kb on + strand, within Ac3H11_2156 at 385.644 kb on + strand, within Ac3H11_2156 at 385.797 kb on + strand, within Ac3H11_2156 at 385.797 kb on + strand, within Ac3H11_2156 at 385.809 kb on + strand, within Ac3H11_2156 at 385.809 kb on + strand, within Ac3H11_2156 at 385.809 kb on + strand, within Ac3H11_2156 at 385.809 kb on + strand, within Ac3H11_2156 at 385.809 kb on + strand, within Ac3H11_2156 at 385.810 kb on - strand, within Ac3H11_2156 at 385.810 kb on - strand, within Ac3H11_2156 at 385.810 kb on - strand, within Ac3H11_2156 at 385.810 kb on - strand, within Ac3H11_2156 at 385.927 kb on + strand, within Ac3H11_2156 at 385.928 kb on - strand, within Ac3H11_2156 at 386.442 kb on + strand at 386.442 kb on + strand at 386.443 kb on - strand at 386.443 kb on - strand at 386.443 kb on - strand at 386.518 kb on - strand, within Ac3H11_2157 at 386.577 kb on - strand, within Ac3H11_2157 at 386.577 kb on - strand, within Ac3H11_2157 at 386.664 kb on + strand at 386.664 kb on + strand at 386.667 kb on + strand at 386.668 kb on - strand at 386.668 kb on - strand at 386.668 kb on - strand at 386.685 kb on + strand at 386.686 kb on - strand at 386.686 kb on - strand at 386.686 kb on - strand at 386.686 kb on - strand at 386.707 kb on + strand at 386.708 kb on - strand at 386.708 kb on - strand at 386.728 kb on + strand at 386.810 kb on + strand at 386.810 kb on + strand at 386.811 kb on - strand at 386.811 kb on - strand at 386.811 kb on - strand at 386.882 kb on + strand at 386.882 kb on + strand at 386.883 kb on - strand at 386.883 kb on - strand at 386.883 kb on - strand at 386.883 kb on - strand at 386.883 kb on - strand at 386.883 kb on - strand at 386.883 kb on - strand at 386.883 kb on - strand at 386.903 kb on + strand at 386.903 kb on + strand at 386.939 kb on + strand at 386.939 kb on + strand at 386.940 kb on - strand at 386.942 kb on - strand at 386.942 kb on - strand at 387.061 kb on + strand at 387.062 kb on - strand at 387.062 kb on - strand at 387.468 kb on + strand, within Ac3H11_2158 at 387.468 kb on + strand, within Ac3H11_2158 at 387.468 kb on + strand, within Ac3H11_2158 at 387.469 kb on - strand, within Ac3H11_2158 at 387.469 kb on - strand, within Ac3H11_2158 at 387.469 kb on - strand, within Ac3H11_2158 at 387.469 kb on - strand, within Ac3H11_2158 at 387.469 kb on - strand, within Ac3H11_2158 at 387.469 kb on - strand, within Ac3H11_2158 at 387.469 kb on - strand, within Ac3H11_2158 at 387.469 kb on - strand, within Ac3H11_2158
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (N) remove 385,461 + Ac3H11_2156 0.33 -0.4 385,461 + Ac3H11_2156 0.33 -0.2 385,461 + Ac3H11_2156 0.33 +0.0 385,461 + Ac3H11_2156 0.33 +0.4 385,461 + Ac3H11_2156 0.33 -0.8 385,461 + Ac3H11_2156 0.33 -0.9 385,461 + Ac3H11_2156 0.33 +0.3 385,462 - Ac3H11_2156 0.33 -1.6 385,462 - Ac3H11_2156 0.33 -0.3 385,462 - Ac3H11_2156 0.33 +0.8 385,462 - Ac3H11_2156 0.33 -0.7 385,462 - Ac3H11_2156 0.33 -0.2 385,462 - Ac3H11_2156 0.33 +0.3 385,462 - Ac3H11_2156 0.33 -0.5 385,487 - Ac3H11_2156 0.35 -0.7 385,487 - Ac3H11_2156 0.35 +0.5 385,644 + Ac3H11_2156 0.45 +0.4 385,644 + Ac3H11_2156 0.45 -1.4 385,797 + Ac3H11_2156 0.56 +1.4 385,797 + Ac3H11_2156 0.56 +1.1 385,809 + Ac3H11_2156 0.57 +0.6 385,809 + Ac3H11_2156 0.57 -0.4 385,809 + Ac3H11_2156 0.57 +0.3 385,809 + Ac3H11_2156 0.57 -1.4 385,809 + Ac3H11_2156 0.57 +0.1 385,810 - Ac3H11_2156 0.57 -1.4 385,810 - Ac3H11_2156 0.57 -0.1 385,810 - Ac3H11_2156 0.57 -1.5 385,810 - Ac3H11_2156 0.57 +2.1 385,927 + Ac3H11_2156 0.65 -1.3 385,928 - Ac3H11_2156 0.65 +0.3 386,442 + -0.6 386,442 + +0.9 386,443 - -0.5 386,443 - +1.5 386,443 - +0.8 386,518 - Ac3H11_2157 0.47 -2.4 386,577 - Ac3H11_2157 0.82 -0.3 386,577 - Ac3H11_2157 0.82 -2.0 386,664 + +0.1 386,664 + -0.9 386,667 + -0.6 386,668 - -0.3 386,668 - -0.7 386,668 - +0.5 386,685 + +0.6 386,686 - +0.9 386,686 - +0.3 386,686 - -0.5 386,686 - -0.0 386,707 + -1.2 386,708 - -2.0 386,708 - +0.3 386,728 + -1.0 386,810 + -1.2 386,810 + +0.9 386,811 - -0.9 386,811 - +0.3 386,811 - -0.5 386,882 + +0.2 386,882 + -1.4 386,883 - -1.8 386,883 - -1.2 386,883 - +3.1 386,883 - +0.2 386,883 - -0.4 386,883 - -0.3 386,883 - -0.2 386,883 - +0.3 386,903 + -0.4 386,903 + -0.2 386,939 + -0.4 386,939 + -0.9 386,940 - -0.6 386,942 - -0.2 386,942 - +0.4 387,061 + -0.2 387,062 - -2.9 387,062 - -1.0 387,468 + Ac3H11_2158 0.23 +1.3 387,468 + Ac3H11_2158 0.23 +0.2 387,468 + Ac3H11_2158 0.23 +0.2 387,469 - Ac3H11_2158 0.23 -1.4 387,469 - Ac3H11_2158 0.23 -0.2 387,469 - Ac3H11_2158 0.23 -0.2 387,469 - Ac3H11_2158 0.23 +0.1 387,469 - Ac3H11_2158 0.23 -0.8 387,469 - Ac3H11_2158 0.23 -0.1 387,469 - Ac3H11_2158 0.23 -0.3 387,469 - Ac3H11_2158 0.23 +0.1
Or see this region's nucleotide sequence