Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_26760

Experiment: acetate 68 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_26755 and AO353_26760 are separated by 390 nucleotidesAO353_26760 and AO353_26765 are separated by 287 nucleotides AO353_26755: AO353_26755 - hypothetical protein, at 5,859,247 to 5,859,600 _26755 AO353_26760: AO353_26760 - hypothetical protein, at 5,859,991 to 5,860,281 _26760 AO353_26765: AO353_26765 - magnesium-translocating P-type ATPase, at 5,860,569 to 5,863,283 _26765 Position (kb) 5859 5860 5861Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5859.033 kb on + strandat 5859.033 kb on + strandat 5859.033 kb on + strandat 5859.033 kb on + strandat 5859.034 kb on - strandat 5859.034 kb on - strandat 5859.105 kb on - strandat 5859.105 kb on - strandat 5859.105 kb on - strandat 5859.158 kb on + strandat 5859.159 kb on - strandat 5859.209 kb on + strandat 5859.428 kb on - strand, within AO353_26755at 5859.479 kb on - strand, within AO353_26755at 5859.507 kb on + strand, within AO353_26755at 5859.507 kb on + strand, within AO353_26755at 5859.507 kb on + strand, within AO353_26755at 5859.508 kb on - strand, within AO353_26755at 5859.508 kb on - strand, within AO353_26755at 5859.508 kb on - strand, within AO353_26755at 5859.508 kb on - strand, within AO353_26755at 5859.508 kb on - strand, within AO353_26755at 5859.508 kb on - strand, within AO353_26755at 5859.564 kb on + strand, within AO353_26755at 5859.565 kb on - strandat 5859.565 kb on - strandat 5859.598 kb on + strandat 5859.598 kb on + strandat 5859.661 kb on - strandat 5859.661 kb on - strandat 5859.661 kb on - strandat 5859.686 kb on + strandat 5859.686 kb on + strandat 5859.686 kb on + strandat 5859.686 kb on + strandat 5859.715 kb on + strandat 5859.723 kb on + strandat 5859.724 kb on - strandat 5859.724 kb on - strandat 5859.745 kb on + strandat 5859.746 kb on - strandat 5859.773 kb on + strandat 5859.773 kb on + strandat 5859.774 kb on - strandat 5859.774 kb on - strandat 5859.774 kb on - strandat 5859.836 kb on + strandat 5859.836 kb on + strandat 5859.836 kb on + strandat 5859.837 kb on - strandat 5859.837 kb on - strandat 5859.882 kb on + strandat 5859.882 kb on + strandat 5859.950 kb on + strandat 5859.991 kb on - strandat 5860.005 kb on + strandat 5860.005 kb on + strandat 5860.010 kb on + strandat 5860.010 kb on + strandat 5860.011 kb on - strandat 5860.011 kb on - strandat 5860.023 kb on - strand, within AO353_26760at 5860.049 kb on + strand, within AO353_26760at 5860.242 kb on - strand, within AO353_26760at 5860.290 kb on + strandat 5860.290 kb on + strandat 5860.304 kb on + strandat 5860.304 kb on + strandat 5860.304 kb on + strandat 5860.304 kb on + strandat 5860.305 kb on - strandat 5860.305 kb on - strandat 5860.305 kb on - strandat 5860.401 kb on - strandat 5860.463 kb on + strandat 5860.463 kb on + strandat 5860.497 kb on + strandat 5860.497 kb on + strandat 5860.513 kb on + strandat 5860.514 kb on - strandat 5860.517 kb on + strandat 5860.517 kb on + strandat 5860.517 kb on + strandat 5860.518 kb on - strandat 5860.579 kb on + strandat 5860.579 kb on + strandat 5860.579 kb on + strandat 5860.673 kb on + strandat 5860.824 kb on + strandat 5860.824 kb on + strandat 5860.824 kb on + strandat 5860.824 kb on + strandat 5860.824 kb on + strandat 5860.824 kb on + strandat 5860.824 kb on + strandat 5860.824 kb on + strandat 5860.824 kb on + strandat 5860.824 kb on + strandat 5860.824 kb on + strandat 5860.824 kb on + strandat 5860.824 kb on + strandat 5860.825 kb on - strandat 5860.825 kb on - strandat 5860.825 kb on - strandat 5860.825 kb on - strandat 5860.825 kb on - strandat 5860.825 kb on - strandat 5860.825 kb on - strandat 5860.825 kb on - strandat 5860.825 kb on - strandat 5860.825 kb on - strandat 5860.866 kb on + strand, within AO353_26765at 5860.919 kb on + strand, within AO353_26765at 5860.919 kb on + strand, within AO353_26765at 5861.214 kb on + strand, within AO353_26765at 5861.214 kb on + strand, within AO353_26765at 5861.214 kb on + strand, within AO353_26765at 5861.215 kb on - strand, within AO353_26765at 5861.215 kb on - strand, within AO353_26765at 5861.215 kb on - strand, within AO353_26765at 5861.215 kb on - strand, within AO353_26765at 5861.215 kb on - strand, within AO353_26765at 5861.215 kb on - strand, within AO353_26765

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction acetate 68 mM
remove
5,859,033 + -0.1
5,859,033 + -1.0
5,859,033 + +0.2
5,859,033 + -1.2
5,859,034 - +0.6
5,859,034 - +0.7
5,859,105 - +0.7
5,859,105 - +1.3
5,859,105 - -0.6
5,859,158 + +0.3
5,859,159 - -0.3
5,859,209 + -0.5
5,859,428 - AO353_26755 0.51 -0.6
5,859,479 - AO353_26755 0.66 -0.9
5,859,507 + AO353_26755 0.73 +0.1
5,859,507 + AO353_26755 0.73 -0.1
5,859,507 + AO353_26755 0.73 +1.0
5,859,508 - AO353_26755 0.74 -0.5
5,859,508 - AO353_26755 0.74 -0.3
5,859,508 - AO353_26755 0.74 +0.9
5,859,508 - AO353_26755 0.74 -1.6
5,859,508 - AO353_26755 0.74 -0.9
5,859,508 - AO353_26755 0.74 -0.5
5,859,564 + AO353_26755 0.90 -0.6
5,859,565 - +0.1
5,859,565 - -0.3
5,859,598 + -0.5
5,859,598 + -0.9
5,859,661 - -0.9
5,859,661 - -1.0
5,859,661 - -0.9
5,859,686 + -0.4
5,859,686 + +0.3
5,859,686 + -0.1
5,859,686 + +1.1
5,859,715 + +1.8
5,859,723 + -0.3
5,859,724 - +0.1
5,859,724 - -0.2
5,859,745 + -0.9
5,859,746 - -0.5
5,859,773 + -0.5
5,859,773 + -0.6
5,859,774 - +0.5
5,859,774 - -0.9
5,859,774 - +0.7
5,859,836 + -0.8
5,859,836 + +0.7
5,859,836 + +0.7
5,859,837 - -0.5
5,859,837 - +0.7
5,859,882 + +1.3
5,859,882 + +3.0
5,859,950 + +0.1
5,859,991 - -0.5
5,860,005 + -1.3
5,860,005 + -0.2
5,860,010 + -0.3
5,860,010 + -0.9
5,860,011 - -1.3
5,860,011 - +0.5
5,860,023 - AO353_26760 0.11 +1.3
5,860,049 + AO353_26760 0.20 -0.3
5,860,242 - AO353_26760 0.86 -1.6
5,860,290 + -1.3
5,860,290 + +0.5
5,860,304 + -2.3
5,860,304 + -1.1
5,860,304 + -0.3
5,860,304 + +2.3
5,860,305 - -0.5
5,860,305 - -0.5
5,860,305 - -0.3
5,860,401 - -0.5
5,860,463 + +0.1
5,860,463 + -1.9
5,860,497 + +0.1
5,860,497 + -0.9
5,860,513 + -0.9
5,860,514 - +1.4
5,860,517 + +0.7
5,860,517 + +2.1
5,860,517 + +0.9
5,860,518 - +0.7
5,860,579 + +0.7
5,860,579 + +1.3
5,860,579 + -0.6
5,860,673 + +1.4
5,860,824 + +0.2
5,860,824 + -1.2
5,860,824 + -1.8
5,860,824 + -0.3
5,860,824 + +0.7
5,860,824 + +0.5
5,860,824 + -1.6
5,860,824 + -0.5
5,860,824 + +0.1
5,860,824 + -0.5
5,860,824 + +0.7
5,860,824 + +0.4
5,860,824 + -0.7
5,860,825 - -0.9
5,860,825 - -1.6
5,860,825 - +0.3
5,860,825 - -0.4
5,860,825 - +0.1
5,860,825 - -0.6
5,860,825 - +2.3
5,860,825 - +0.5
5,860,825 - -0.6
5,860,825 - +0.2
5,860,866 + AO353_26765 0.11 -0.8
5,860,919 + AO353_26765 0.13 +1.6
5,860,919 + AO353_26765 0.13 +0.9
5,861,214 + AO353_26765 0.24 +0.4
5,861,214 + AO353_26765 0.24 +0.9
5,861,214 + AO353_26765 0.24 +0.0
5,861,215 - AO353_26765 0.24 -0.8
5,861,215 - AO353_26765 0.24 -0.6
5,861,215 - AO353_26765 0.24 +1.7
5,861,215 - AO353_26765 0.24 +0.4
5,861,215 - AO353_26765 0.24 -0.3
5,861,215 - AO353_26765 0.24 +1.9

Or see this region's nucleotide sequence